UHGV-0108102

Genome information

Genome length 37,573 bps

CDS count 43

Completeness 91.18% (high-quality)

geNomad score 0.9706

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108102
vOTU ID	vOTU-072327
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_241970
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.18% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9706
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.11
Jumbo phage	No

Genome content
Genome length	37,573 bps
GC content	37.06%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	94.49%
Average CDS length	830.23 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108102_1	PHROG	phrog_27828	NA	unknown function
UHGV-0108102_1	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0108102_1	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0108102_3	eggNOG-mapper	556269.ACDQ01000006_gene1645	NA	NA
UHGV-0108102_4	eggNOG-mapper	1401067.HMPREF0872_07835	NA	NA
UHGV-0108102_4	Structural annotation	PF03906	NA	NA
UHGV-0108102_5	PHROG	phrog_9880	NA	unknown function
UHGV-0108102_5	UniRef90	UniRef90_UPI000F8E604F	RapH N-terminal domain-containing protein	NA
UHGV-0108102_5	eggNOG-mapper	699218.HMPREF0889_0277	NA	NA
UHGV-0108102_5	Pfam	PF18819	Phage MuF-C-terminal domain	MuF_C
UHGV-0108102_5	Pfam	PF18814	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease5	PBECR5
UHGV-0108102_6	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0108102_6	PHROG	phrog_1044	endolysin	lysis
UHGV-0108102_6	UniRef90	UniRef90_A0A096AJQ8	NlpC/P60 domain-containing protein	NA
UHGV-0108102_6	eggNOG-mapper	1401067.HMPREF0872_06760	NA	NA
UHGV-0108102_6	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0108102_6	Structural annotation	PF01464, COG0741	NA	NA
UHGV-0108102_7	PHROG	phrog_418	internal virion protein	head and packaging
UHGV-0108102_7	eggNOG-mapper	1401067.HMPREF0872_06765	NA	NA
UHGV-0108102_7	Structural annotation	PF16789, TIGR02971, COG3524	NA	NA
UHGV-0108102_8	PHROG	phrog_308	internal virion protein	head and packaging
UHGV-0108102_8	UniRef90	UniRef90_UPI0013DF7451	NA	NA
UHGV-0108102_8	eggNOG-mapper	1122963.AUHB01000020_gene2269	NA	NA
UHGV-0108102_8	Pfam	PF11090	Bacteriophage T7, probable scaffold protein Gp13	Phage_T7_Gp13
UHGV-0108102_8	Structural annotation	PF13420, MF_02210, NF011709, COG1247	NA	NA
UHGV-0108102_9	PHROG	phrog_376	tail protein	tail
UHGV-0108102_9	UniRef90	UniRef90_A0A0U1KV93	NA	NA
UHGV-0108102_9	eggNOG-mapper	1401067.HMPREF0872_06775	NA	NA
UHGV-0108102_9	Structural annotation	PF11134, MF_00923, TIGR03300, COG2706	NA	NA
UHGV-0108102_10	PHROG	phrog_394	tail protein	tail
UHGV-0108102_10	eggNOG-mapper	1401067.HMPREF0872_06780	NA	NA
UHGV-0108102_10	Structural annotation	PF17212	NA	NA
UHGV-0108102_11	Structural annotation	PF21190	NA	NA
UHGV-0108102_12	PHROG	phrog_212	major head protein	head and packaging
UHGV-0108102_12	UniRef90	UniRef90_A0A077DE24	NA	NA
UHGV-0108102_12	eggNOG-mapper	699218.HMPREF0889_0284	NA	NA
UHGV-0108102_12	Pfam	PF20911	Major capsid protein GP7	GP7
UHGV-0108102_12	Structural annotation	PF20911, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0108102_13	PHROG	phrog_458	protease	other
UHGV-0108102_13	UniRef90	UniRef90_UPI000ABA743D	peptidase	NA
UHGV-0108102_13	eggNOG-mapper	1401067.HMPREF0872_06800	NA	NA
UHGV-0108102_14	PHROG	phrog_528	NA	unknown function
UHGV-0108102_14	eggNOG-mapper	1401067.HMPREF0872_06805	NA	NA
UHGV-0108102_15	PHROG	phrog_332	head-tail adaptor	connector
UHGV-0108102_15	UniRef90	UniRef90_UPI000F8DD2F0	portal protein	NA
UHGV-0108102_15	eggNOG-mapper	1401067.HMPREF0872_06810	Bacteriophage head to tail connecting protein	NA
UHGV-0108102_15	Pfam	PF12236	Bacteriophage head to tail connecting protein	Head-tail_con
UHGV-0108102_15	Structural annotation	PF12236, MF_04120, TIGR01538, COG4695	NA	NA
UHGV-0108102_17	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0108102_17	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0108102_17	UniRef90	UniRef90_UPI001D00EC11	terminase family protein	NA
UHGV-0108102_17	eggNOG-mapper	1401067.HMPREF0872_06820	Terminase-like family	NA
UHGV-0108102_17	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0108102_17	COG	COG1783	Phage terminase large subunit	NA
UHGV-0108102_17	Structural annotation	PF03237, PF17289, MF_04146, TIGR01547, COG4373	NA	NA
UHGV-0108102_18	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0108102_18	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0108102_18	UniRef90	UniRef90_UPI000F8D1900	terminase small subunit	NA
UHGV-0108102_18	eggNOG-mapper	1158607.UAU_05157	Terminase small subunit	NA
UHGV-0108102_18	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0108102_18	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0108102_21	eggNOG-mapper	665959.HMPREF1013_00860	NA	NA
UHGV-0108102_25	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0108102_25	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0108102_25	UniRef90	UniRef90_A0A6N3AK63	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0108102_25	eggNOG-mapper	864563.HMPREF9166_0583	C-5 cytosine-specific DNA methylase	NA
UHGV-0108102_25	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0108102_25	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0108102_25	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0108102_25	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0108102_25	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA
UHGV-0108102_26	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0108102_26	UniRef90	UniRef90_A0A2S7ZCM0	NA	NA
UHGV-0108102_26	eggNOG-mapper	883156.HMPREF9282_01229	NA	NA
UHGV-0108102_26	Pfam	PF14359	NA	DUF4406
UHGV-0108102_26	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0108102_27	PHROG	phrog_29533	NA	unknown function
UHGV-0108102_28	UniRef90	UniRef90_UPI000486B6FD	HNH endonuclease	NA
UHGV-0108102_28	eggNOG-mapper	1123489.AUAN01000010_gene369	endonuclease activity	NA
UHGV-0108102_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0108102_28	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0108102_28	Structural annotation	COG1403	NA	NA
UHGV-0108102_30	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0108102_30	UniRef90	UniRef90_UPI000F8D3795	Lar family restriction alleviation protein	NA
UHGV-0108102_30	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0108102_30	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0108102_30	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0108102_30	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0108102_31	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0108102_31	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0108102_31	UniRef90	UniRef90_UPI00098A2438	single-stranded DNA-binding protein	NA
UHGV-0108102_31	eggNOG-mapper	1401067.HMPREF0872_06930	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0108102_31	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0108102_31	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0108102_31	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0108102_31	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0108102_32	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0108102_32	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0108102_32	eggNOG-mapper	883156.HMPREF9282_01224	NA	NA
UHGV-0108102_32	Structural annotation	PF11726	NA	NA
UHGV-0108102_35	PHROG	phrog_6058	NA	unknown function
UHGV-0108102_35	UniRef90	UniRef90_A0A0J6ZJX1	HTH_17 domain-containing protein	NA
UHGV-0108102_35	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0108102_36	UniRef90	UniRef90_A0A346B2I2	NA	NA
UHGV-0108102_36	eggNOG-mapper	1273103.NM10_03001	NA	NA
UHGV-0108102_36	Pfam	PF05339	NA	DUF739
UHGV-0108102_36	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0108102_37	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0108102_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0108102_37	UniRef90	UniRef90_UPI001389D405	helix-turn-helix domain-containing protein	NA
UHGV-0108102_37	eggNOG-mapper	883114.HMPREF9709_01225	Helix-turn-helix XRE-family like proteins	NA
UHGV-0108102_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108102_37	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0108102_37	Structural annotation	PF12844, NF041951, COG1476	NA	NA
UHGV-0108102_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0108102_38	UniRef90	UniRef90_UPI000F8E54AF	helix-turn-helix domain-containing protein	NA
UHGV-0108102_38	eggNOG-mapper	1536772.R70723_06535	addiction module antidote protein HigA	NA
UHGV-0108102_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108102_38	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0108102_38	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0108102_39	PHROG	phrog_20936	NA	unknown function
UHGV-0108102_39	UniRef90	UniRef90_UPI0013E038FD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0108102_39	eggNOG-mapper	1321782.HMPREF1986_02242	NA	NA
UHGV-0108102_39	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0108102_39	Structural annotation	PF06114	NA	NA
UHGV-0108102_40	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0108102_42	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0108102_42	UniRef90	UniRef90_UPI000F8C8A88	Abi family protein	NA
UHGV-0108102_42	eggNOG-mapper	1122173.AXVL01000037_gene1364	Abi-like protein	NA
UHGV-0108102_42	PADLOC	AbiD	AbiD	Abi
UHGV-0108102_42	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0108102_42	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0108102_42	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0108102_43	KOfam	K14059	int; integrase	NA
UHGV-0108102_43	PHROG	phrog_1	integrase	integration and excision
UHGV-0108102_43	UniRef90	UniRef90_A0A0J6WPJ6	Tyr recombinase domain-containing protein	NA
UHGV-0108102_43	eggNOG-mapper	1401067.HMPREF0872_06920	Belongs to the 'phage' integrase family	NA
UHGV-0108102_43	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0108102_43	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0108102_43	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA