UHGV-0108130

Genome information

Genome length 34,768 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9769

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108130
vOTU ID	vOTU-045575
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_238220
BioSample	SAMEA3708482
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9769
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.42
Jumbo phage	No

Genome content
Genome length	34,768 bps
GC content	33.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	93.88%
Average CDS length	595.96 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108130_1	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-0108130_1	PHROG	phrog_5218	NA	unknown function
UHGV-0108130_1	UniRef90	UniRef90_A0A6N3ADB1	Phage-related minor tail protein	NA
UHGV-0108130_1	eggNOG-mapper	658655.HMPREF0988_00531	Phage-related minor tail protein	NA
UHGV-0108130_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0108130_1	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0108130_2	PHROG	phrog_706	NA	unknown function
UHGV-0108130_2	UniRef90	UniRef90_A0A6N3ADJ1	Bacteriophage Gp15 protein	NA
UHGV-0108130_2	eggNOG-mapper	428125.CLOLEP_01787	Bacteriophage Gp15 protein	NA
UHGV-0108130_2	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0108130_2	Structural annotation	PF06854	NA	NA
UHGV-0108130_3	Structural annotation	PF10666	NA	NA
UHGV-0108130_4	PHROG	phrog_820	major tail protein	tail
UHGV-0108130_4	UniRef90	UniRef90_A0A3A6EPU8	S-l_SbsC_C domain-containing protein	NA
UHGV-0108130_4	eggNOG-mapper	428125.CLOLEP_00178	Belongs to the glycosyl hydrolase family 6	NA
UHGV-0108130_4	COG	COG5492	NA	NA
UHGV-0108130_4	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0108130_5	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0108130_5	Structural annotation	PF12691	NA	NA
UHGV-0108130_6	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0108130_6	UniRef90	UniRef90_A0A6N3ACU8	Minor capsid protein	NA
UHGV-0108130_6	eggNOG-mapper	1027396.LMOSA_9610	Minor capsid protein	NA
UHGV-0108130_6	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0108130_6	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0108130_7	UniRef90	UniRef90_UPI001D06E7F2	minor capsid protein	NA
UHGV-0108130_7	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0108130_8	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0108130_8	eggNOG-mapper	1497679.EP56_07555	NA	NA
UHGV-0108130_9	PHROG	phrog_422	major head protein	head and packaging
UHGV-0108130_9	UniRef90	UniRef90_A0A316T938	S-l_SbsC_C domain-containing protein	NA
UHGV-0108130_9	eggNOG-mapper	428125.CLOLEP_00183	COG NOG28280 non supervised orthologous group	NA
UHGV-0108130_9	Structural annotation	PF19821, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0108130_11	eggNOG-mapper	596323.HMPREF0554_1580	Belongs to the Dps family	NA
UHGV-0108130_11	COG	COG0783	DNA-binding ferritin-like protein (oxidative damage protectant)	NA
UHGV-0108130_11	Structural annotation	PF14530, MF_01441, NF009990, COG0783	NA	NA
UHGV-0108130_13	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0108130_13	UniRef90	UniRef90_A0A6N3A974	Phage minor capsid protein 2	NA
UHGV-0108130_13	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-0108130_13	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0108130_13	COG	COG2369	NA	NA
UHGV-0108130_13	Structural annotation	PF06152	NA	NA
UHGV-0108130_14	PHROG	phrog_533	portal protein	head and packaging
UHGV-0108130_14	UniRef90	UniRef90_A0A6N3AB16	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0108130_14	eggNOG-mapper	428125.CLOLEP_01803	NA	NA
UHGV-0108130_14	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0108130_14	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-0108130_14	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0108130_15	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0108130_15	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0108130_15	UniRef90	UniRef90_A0A6N3ALZ5	Terminase-like family protein	NA
UHGV-0108130_15	eggNOG-mapper	642492.Clole_0814	Phage terminase, large subunit, PBSX family	NA
UHGV-0108130_15	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0108130_15	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0108130_15	COG	COG1783	Phage terminase large subunit	NA
UHGV-0108130_15	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0108130_16	UniRef90	UniRef90_A0A3E3EF98	Helix-turn-helix domain-containing protein	NA
UHGV-0108130_16	eggNOG-mapper	428125.CLOLEP_01805	NA	NA
UHGV-0108130_16	Structural annotation	PF13542	NA	NA
UHGV-0108130_20	UniRef90	UniRef90_A0A7U9CJ41	Phosphagen kinase N-terminal domain-containing protein	NA
UHGV-0108130_23	eggNOG-mapper	428127.EUBDOL_01238	NA	NA
UHGV-0108130_25	AcrCatalog	cluster_200940	NA	NA
UHGV-0108130_26	eggNOG-mapper	1035196.HMPREF9998_01745	NA	NA
UHGV-0108130_28	PHROG	phrog_22292	NA	unknown function
UHGV-0108130_28	eggNOG-mapper	1232446.BAIE02000041_gene2433	NA	NA
UHGV-0108130_29	PHROG	phrog_986	RNA-binding protein	DNA, RNA and nucleotide metabolism
UHGV-0108130_29	UniRef90	UniRef90_A0A6N3AFA8	NA	NA
UHGV-0108130_29	eggNOG-mapper	39103.U5U430_9CAUD	NA	NA
UHGV-0108130_29	Pfam	PF12961	NA	DUF3850
UHGV-0108130_29	Structural annotation	PF12961, MF_00684, NF003443, COG4043	NA	NA
UHGV-0108130_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0108130_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0108130_30	UniRef90	UniRef90_UPI000DE4F8FA	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0108130_30	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-0108130_30	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0108130_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0108130_30	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0108130_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0108130_30	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0108130_31	PHROG	phrog_7566	NA	unknown function
UHGV-0108130_31	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0108130_32	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0108130_32	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0108130_32	UniRef90	UniRef90_U3PDU0	Putative Holliday junction resolvase	NA
UHGV-0108130_32	eggNOG-mapper	1399942.U3PDU0_9CAUD	magnesium ion binding	NA
UHGV-0108130_32	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0108130_32	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0108130_33	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0108130_33	eggNOG-mapper	428127.EUBDOL_01246	NA	NA
UHGV-0108130_33	Structural annotation	PF05772	NA	NA
UHGV-0108130_34	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0108130_34	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0108130_34	UniRef90	UniRef90_A0A3E3EF61	Single-stranded DNA-binding protein	NA
UHGV-0108130_34	eggNOG-mapper	1232446.BAIE02000064_gene3707	Single-strand binding protein family	NA
UHGV-0108130_34	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0108130_34	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0108130_34	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0108130_34	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0108130_34	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0108130_35	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0108130_35	UniRef90	UniRef90_A0A6N2YYW1	ERF superfamily protein	NA
UHGV-0108130_35	eggNOG-mapper	386415.NT01CX_2192	ERF superfamily	NA
UHGV-0108130_35	Pfam	PF04404	ERF superfamily	ERF
UHGV-0108130_35	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0108130_38	Structural annotation	PF11417	NA	NA
UHGV-0108130_39	PHROG	phrog_4707	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0108130_39	eggNOG-mapper	1122172.KB890259_gene1441	NA	NA
UHGV-0108130_39	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0108130_39	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0108130_39	Structural annotation	PF04492, MF_01819, NF040939, COG3355	NA	NA
UHGV-0108130_40	UniRef90	UniRef90_A0A7U9GQY0	HTH_17 domain-containing protein	NA
UHGV-0108130_40	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0108130_40	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0108130_41	PHROG	phrog_2113	NA	unknown function
UHGV-0108130_43	UniRef90	UniRef90_UPI000E4A43B6	transcriptional regulator	NA
UHGV-0108130_43	eggNOG-mapper	1302863.I872_10490	sequence-specific DNA binding	NA
UHGV-0108130_43	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0108130_43	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0108130_44	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0108130_44	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0108130_44	UniRef90	UniRef90_UPI000E54ACF0	helix-turn-helix domain-containing protein	NA
UHGV-0108130_44	eggNOG-mapper	411483.FAEPRAA2165_00756	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0108130_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108130_44	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0108130_44	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0108130_44	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0108130_46	KOfam	K14059	int; integrase	NA
UHGV-0108130_46	PHROG	phrog_1	integrase	integration and excision
UHGV-0108130_46	UniRef90	UniRef90_UPI000E46F6FE	site-specific integrase	NA
UHGV-0108130_46	eggNOG-mapper	1232446.BAIE02000002_gene793	Phage integrase family	NA
UHGV-0108130_46	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-0108130_46	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0108130_46	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0108130_46	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0108130_47	AcrCatalog	cluster_37488	NA	NA
UHGV-0108130_48	UniRef90	UniRef90_G9QZ89	HTH cro/C1-type domain-containing protein	NA
UHGV-0108130_48	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108130_49	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0108130_49	PHROG	phrog_435	endolysin	lysis
UHGV-0108130_49	UniRef90	UniRef90_UPI001D075068	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0108130_49	eggNOG-mapper	411461.DORFOR_01187	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0108130_49	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0108130_49	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0108130_49	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0108130_49	Structural annotation	PF01520, PF01471, MF_00562, TIGR02883, NF038080, COG0860, COG3409	NA	NA
UHGV-0108130_51	PHROG	phrog_33625	holin	lysis
UHGV-0108130_51	UniRef90	UniRef90_A0A6N3AF02	Bacteriophage holin	NA
UHGV-0108130_51	eggNOG-mapper	1196031.ALEG01000039_gene1391	Bacteriophage holin	NA
UHGV-0108130_51	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0108130_51	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0108130_51	COG	COG5546	NA	NA
UHGV-0108130_51	Structural annotation	COG5546	NA	NA
UHGV-0108130_52	PHROG	phrog_24267	NA	unknown function
UHGV-0108130_52	eggNOG-mapper	553973.CLOHYLEM_06931	tail collar domain protein	NA
UHGV-0108130_52	COG	COG4675	Phage tail collar domain	NA
UHGV-0108130_53	PHROG	phrog_3558	tail protein	tail
UHGV-0108130_53	UniRef90	UniRef90_A0A6N3AEF7	Peptidase S74 domain-containing protein	NA
UHGV-0108130_53	eggNOG-mapper	610130.Closa_0754	NA	NA
UHGV-0108130_53	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0108130_53	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0108130_53	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0108130_53	COG	COG4926	Phage-related protein	NA
UHGV-0108130_53	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0108130_54	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0108130_54	eggNOG-mapper	1235799.C818_04232	phage tail	NA
UHGV-0108130_54	COG	COG4722	Phage-related protein YomH	NA
UHGV-0108130_55	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0108130_55	eggNOG-mapper	1160721.RBI_I01576	tail tape measure protein, TP901	NA
UHGV-0108130_55	COG	COG5283	Phage-related tail protein	NA
UHGV-0108130_55	Structural annotation	PF11177	NA	NA