UHGV-0108135

Genome information

Genome length 32,098 bps

CDS count 50

Completeness 91.75% (high-quality)

geNomad score 0.9715

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108135
vOTU ID	vOTU-060229
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_238234
BioSample	SAMEA3708585
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.75% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9715
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.17
Jumbo phage	No

Genome content
Genome length	32,098 bps
GC content	40.51%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	91.80%
Average CDS length	594.06 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108135_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0108135_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0108135_2	UniRef90	UniRef90_C4Z7Z8	Site-specific recombinase	NA
UHGV-0108135_2	eggNOG-mapper	742765.HMPREF9457_02089	Resolvase, N terminal domain	NA
UHGV-0108135_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0108135_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0108135_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0108135_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0108135_2	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0108135_3	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0108135_3	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0108135_3	UniRef90	UniRef90_UPI001BC64A01	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0108135_3	eggNOG-mapper	1235792.C808_05257	Toxic component of a toxin-antitoxin (TA) module	NA
UHGV-0108135_3	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0108135_3	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0108135_3	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0108135_4	KOfam	K10716	kch, trkA, mthK, pch; voltage-gated potassium channel	NA
UHGV-0108135_4	PHROG	phrog_7872	NA	unknown function
UHGV-0108135_4	UniRef90	UniRef90_A0A350VIR8	Ion transporter	NA
UHGV-0108135_4	eggNOG-mapper	1211844.CBLM010000091_gene3165	Ion transport protein	NA
UHGV-0108135_4	Pfam	PF00520	Ion transport protein	Ion_trans
UHGV-0108135_4	COG	COG0569	Trk/Ktr K+ transport system regulatory component TrkA/KtrA/KtrC, RCK domain	NA
UHGV-0108135_4	Structural annotation	PF00520, NF040645	NA	NA
UHGV-0108135_5	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0108135_5	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0108135_5	UniRef90	UniRef90_C4Z801	SOS-response transcriptional repressor, LexA	NA
UHGV-0108135_5	eggNOG-mapper	1321820.HMPREF1983_00958	Helix-turn-helix XRE-family like proteins	NA
UHGV-0108135_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108135_5	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0108135_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0108135_5	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0108135_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0108135_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0108135_6	UniRef90	UniRef90_C4Z802	HTH cro/C1-type domain-containing protein	NA
UHGV-0108135_6	eggNOG-mapper	1256908.HMPREF0373_00646	Helix-turn-helix XRE-family like proteins	NA
UHGV-0108135_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108135_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0108135_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0108135_9	Structural annotation	PF09486, TIGR03090, COG5420	NA	NA
UHGV-0108135_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0108135_11	eggNOG-mapper	483218.BACPEC_01173	NA	NA
UHGV-0108135_11	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0108135_12	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0108135_12	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0108135_12	UniRef90	UniRef90_C4Z812	Ribonuclease H	NA
UHGV-0108135_12	eggNOG-mapper	635013.TherJR_1738	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0108135_12	Pfam	PF00075	RNase H	RNase_H
UHGV-0108135_12	COG	COG0328	Ribonuclease HI	NA
UHGV-0108135_12	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0108135_13	Structural annotation	PF18066, NF007780, COG1544	NA	NA
UHGV-0108135_14	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0108135_14	PHROG	phrog_5696	NA	unknown function
UHGV-0108135_14	UniRef90	UniRef90_A0A0M6WYD5	N6_Mtase domain-containing protein	NA
UHGV-0108135_14	eggNOG-mapper	1235457.C404_25710	N-6 DNA Methylase	NA
UHGV-0108135_14	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0108135_14	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0108135_14	Structural annotation	COG0286	NA	NA
UHGV-0108135_15	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0108135_16	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0108135_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0108135_16	UniRef90	UniRef90_A0A8E3SJJ8	Tyrosine-type recombinase/integrase	NA
UHGV-0108135_16	eggNOG-mapper	397291.C804_01139	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0108135_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0108135_16	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0108135_16	Structural annotation	PF00589, MF_02055, NF040815, COG4974	NA	NA
UHGV-0108135_17	KOfam	K14059	int; integrase	NA
UHGV-0108135_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0108135_17	UniRef90	UniRef90_A0A0M6WVP0	Tyr recombinase domain-containing protein	NA
UHGV-0108135_17	eggNOG-mapper	1280698.AUJS01000010_gene818	Belongs to the 'phage' integrase family	NA
UHGV-0108135_17	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0108135_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0108135_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0108135_17	Structural annotation	PF00589, PF14659, MF_02055, NF001399, COG4974	NA	NA
UHGV-0108135_18	UniRef90	UniRef90_A0A417WAJ1	HNH endonuclease	NA
UHGV-0108135_18	eggNOG-mapper	1235800.C819_02254	HNH nucleases	NA
UHGV-0108135_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0108135_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0108135_21	UniRef90	UniRef90_A0A174GZ53	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0108135_21	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0108135_21	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0108135_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0108135_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0108135_21	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0108135_22	UniRef90	UniRef90_A0A0F0C7A4	NA	NA
UHGV-0108135_22	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0108135_24	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0108135_24	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0108135_24	UniRef90	UniRef90_B7AR52	HTH cro/C1-type domain-containing protein	NA
UHGV-0108135_24	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-0108135_24	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0108135_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108135_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0108135_24	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0108135_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0108135_28	UniRef90	UniRef90_UPI001D05F87A	RNA polymerase subunit sigma-24	NA
UHGV-0108135_28	eggNOG-mapper	588581.Cpap_2562	NA	NA
UHGV-0108135_28	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0108135_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0108135_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0108135_29	UniRef90	UniRef90_A0A0M6WIX4	HNHc domain-containing protein	NA
UHGV-0108135_29	eggNOG-mapper	1405.DJ92_863	HNH endonuclease	NA
UHGV-0108135_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0108135_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0108135_30	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0108135_30	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0108135_30	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0108135_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0108135_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0108135_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0108135_31	UniRef90	UniRef90_D4M588	Phage terminase-like protein, large subunit	NA
UHGV-0108135_31	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0108135_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0108135_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0108135_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0108135_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0108135_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0108135_32	UniRef90	UniRef90_UPI00156D5DC9	phage portal protein	NA
UHGV-0108135_32	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0108135_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0108135_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0108135_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0108135_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0108135_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0108135_33	UniRef90	UniRef90_A0A0M6WHX9	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0108135_33	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0108135_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0108135_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0108135_33	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0108135_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0108135_34	UniRef90	UniRef90_UPI00156F222D	phage major capsid protein	NA
UHGV-0108135_34	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0108135_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0108135_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0108135_34	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0108135_34	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0108135_36	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-0108135_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0108135_37	Structural annotation	PF05657	NA	NA
UHGV-0108135_38	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0108135_38	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0108135_38	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0108135_38	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0108135_39	PHROG	phrog_88	major tail protein	tail
UHGV-0108135_39	UniRef90	UniRef90_A0A1Q9J4Y1	Phage tail protein	NA
UHGV-0108135_39	eggNOG-mapper	1487921.DP68_11355	phage major tail protein	NA
UHGV-0108135_39	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0108135_39	COG	COG5492	NA	NA
UHGV-0108135_39	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0108135_41	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0108135_41	UniRef90	UniRef90_A0A350VIV1	Phage tail tape measure protein	NA
UHGV-0108135_41	eggNOG-mapper	1035184.HMPREF1042_1328	Phage tail tape measure protein	NA
UHGV-0108135_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0108135_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0108135_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0108135_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0108135_42	UniRef90	UniRef90_A0A350VIV2	Phage tail protein	NA
UHGV-0108135_42	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0108135_42	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0108135_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0108135_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0108135_43	PHROG	phrog_13289	tail protein	tail
UHGV-0108135_43	UniRef90	UniRef90_A0A0M6WI67	Prophage_tail domain-containing protein	NA
UHGV-0108135_43	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0108135_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0108135_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0108135_43	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0108135_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0108135_44	PHROG	phrog_11037	NA	unknown function
UHGV-0108135_44	UniRef90	UniRef90_A0A0M6WKQ1	Phage_lysozyme2 domain-containing protein	NA
UHGV-0108135_44	eggNOG-mapper	33035.JPJF01000023_gene3229	NA	NA
UHGV-0108135_44	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0108135_44	Structural annotation	PF18013	NA	NA
UHGV-0108135_45	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-0108135_45	COG	COG4675	Phage tail collar domain	NA
UHGV-0108135_46	PHROG	phrog_15594	NA	unknown function
UHGV-0108135_46	eggNOG-mapper	862969.SCI_1223	NA	NA
UHGV-0108135_46	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-0108135_47	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-0108135_48	PHROG	phrog_24103	NA	unknown function
UHGV-0108135_48	eggNOG-mapper	665956.HMPREF1032_02937	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0108135_48	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0108135_50	PHROG	phrog_199	holin	lysis
UHGV-0108135_50	UniRef90	UniRef90_A0A350VIW1	Holin	NA
UHGV-0108135_50	eggNOG-mapper	411462.DORLON_00766	Bacteriophage holin family	NA
UHGV-0108135_50	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0108135_50	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0108135_50	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0108135_50	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA