UHGV-0108189

Genome information

Genome length 39,099 bps

CDS count 66

Completeness 100.00% (complete)

geNomad score 0.9716

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108189
vOTU ID	vOTU-045578
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_236036
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9716
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.16
Jumbo phage	No

Genome content
Genome length	39,099 bps
GC content	61.62%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	66
CDS density	93.66%
Average CDS length	559.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108189_1	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0108189_1	UniRef90	UniRef90_UPI001245DB37	terminase large subunit	NA
UHGV-0108189_1	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0108189_1	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0108189_1	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0108189_1	Structural annotation	PF20441, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0108189_3	PHROG	phrog_12	portal protein	head and packaging
UHGV-0108189_3	UniRef90	UniRef90_UPI000B38DE26	phage portal protein	NA
UHGV-0108189_3	eggNOG-mapper	1501230.ET33_02290	Phage portal protein	NA
UHGV-0108189_3	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0108189_3	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0108189_3	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0108189_3	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0108189_4	PHROG	phrog_16951	NA	unknown function
UHGV-0108189_4	eggNOG-mapper	742738.HMPREF9460_04070	NA	NA
UHGV-0108189_4	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0108189_5	PHROG	phrog_10	major head protein	head and packaging
UHGV-0108189_5	UniRef90	UniRef90_UPI000B37FFEF	phage major capsid protein	NA
UHGV-0108189_5	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0108189_5	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0108189_5	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0108189_5	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0108189_6	UniRef90	UniRef90_UPI0010309381	head-tail connector protein	NA
UHGV-0108189_6	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-0108189_6	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0108189_7	UniRef90	UniRef90_A0A2V2DY02	NA	NA
UHGV-0108189_7	eggNOG-mapper	665956.HMPREF1032_00099	NA	NA
UHGV-0108189_8	PHROG	phrog_25	head closure Hc1	connector
UHGV-0108189_8	UniRef90	UniRef90_UPI001C028139	phage head closure protein	NA
UHGV-0108189_8	eggNOG-mapper	97138.C820_00612	Phage head-tail adaptor	NA
UHGV-0108189_8	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0108189_8	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0108189_8	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0108189_8	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0108189_9	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0108189_9	UniRef90	UniRef90_A0A7X3ARF4	HK97 gp10 family phage protein	NA
UHGV-0108189_9	eggNOG-mapper	394503.Ccel_2953	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0108189_9	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0108189_9	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0108189_10	eggNOG-mapper	318464.IO99_13730	NA	NA
UHGV-0108189_10	Pfam	PF20765	NA	DUF6838
UHGV-0108189_10	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0108189_11	PHROG	phrog_1480	tail sheath	tail
UHGV-0108189_11	UniRef90	UniRef90_A0A7X3ARB4	Phage tail protein	NA
UHGV-0108189_11	eggNOG-mapper	97138.C820_00609	Phage tail sheath C-terminal domain	NA
UHGV-0108189_11	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0108189_11	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0108189_12	PHROG	phrog_365	tail protein	tail
UHGV-0108189_12	UniRef90	UniRef90_UPI001C00EEC8	phage tail tube protein	NA
UHGV-0108189_12	eggNOG-mapper	641107.CDLVIII_1345	Phage tail tube protein	NA
UHGV-0108189_12	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0108189_12	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0108189_13	PHROG	phrog_4976	tail assembly chaperone	tail
UHGV-0108189_13	eggNOG-mapper	97138.C820_00607	NA	NA
UHGV-0108189_13	Structural annotation	PF08890, TIGR01674	NA	NA
UHGV-0108189_14	PHROG	phrog_973	tail length tape measure protein	tail
UHGV-0108189_14	UniRef90	UniRef90_A0A3F2ZYT8	Putative prophage LambdaBa01, membrane protein	NA
UHGV-0108189_14	eggNOG-mapper	632245.CLP_2908	phage tail tape measure protein	NA
UHGV-0108189_14	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0108189_14	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0108189_15	Structural annotation	PF09274, NF008671, COG4710	NA	NA
UHGV-0108189_17	AcrCatalog	cluster_86620	NA	NA
UHGV-0108189_18	PHROG	phrog_23201	NA	unknown function
UHGV-0108189_18	UniRef90	UniRef90_UPI000F05162E	phage portal protein	NA
UHGV-0108189_18	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0108189_18	Structural annotation	PF19266, TIGR02126, COG3499	NA	NA
UHGV-0108189_19	PHROG	phrog_400	tail protein	tail
UHGV-0108189_19	UniRef90	UniRef90_A0A1C6BFH5	Peptidase C51 domain-containing protein	NA
UHGV-0108189_19	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0108189_19	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0108189_20	Structural annotation	PF10844	NA	NA
UHGV-0108189_21	UniRef90	UniRef90_UPI001C010E9D	NA	NA
UHGV-0108189_21	eggNOG-mapper	318464.IO99_13685	NA	NA
UHGV-0108189_21	Pfam	PF10934	NA	DUF2634
UHGV-0108189_21	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0108189_21	Structural annotation	PF10934, MF_02010, NF010728, COG4381	NA	NA
UHGV-0108189_22	PHROG	phrog_6	baseplate protein	tail
UHGV-0108189_22	UniRef90	UniRef90_A0A7X3DGX1	Baseplate J/gp47 family protein	NA
UHGV-0108189_22	eggNOG-mapper	1203606.HMPREF1526_01353	Baseplate J-like protein	NA
UHGV-0108189_22	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0108189_22	COG	COG3299	NA	NA
UHGV-0108189_22	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0108189_23	PHROG	phrog_521	tail protein	tail
UHGV-0108189_23	UniRef90	UniRef90_A0A7X3DIU9	NA	NA
UHGV-0108189_23	eggNOG-mapper	696281.Desru_3492	NA	NA
UHGV-0108189_23	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0108189_23	COG	COG3778	NA	NA
UHGV-0108189_23	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0108189_24	eggNOG-mapper	742738.HMPREF9460_03962	NA	NA
UHGV-0108189_25	PHROG	phrog_38707	NA	unknown function
UHGV-0108189_25	UniRef90	UniRef90_A0A1C6GKY2	Mtd_N domain-containing protein	NA
UHGV-0108189_25	eggNOG-mapper	742738.HMPREF9460_03963	tail collar domain protein	NA
UHGV-0108189_25	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0108189_25	COG	COG4675	Phage tail collar domain	NA
UHGV-0108189_25	Structural annotation	PF18454	NA	NA
UHGV-0108189_26	UniRef90	UniRef90_A0A7X7FJ03	Mtd_N domain-containing protein	NA
UHGV-0108189_26	eggNOG-mapper	1297617.JPJD01000049_gene1300	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0108189_26	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0108189_26	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0108189_27	KOfam	K15046	IVNS1ABP, NS1BP; influenza virus NS1A-binding protein	NA
UHGV-0108189_27	PHROG	phrog_19111	NA	unknown function
UHGV-0108189_27	Pfam	PF19789	NA	DUF6273
UHGV-0108189_27	Structural annotation	PF20770, PF18573, MF_01195, TIGR03548, NF033147, COG3055	NA	NA
UHGV-0108189_28	UniRef90	UniRef90_A0A2Z4QBF5	Putative RNA binding protein	NA
UHGV-0108189_28	eggNOG-mapper	1297617.JPJD01000034_gene669	NA	NA
UHGV-0108189_29	PHROG	phrog_134	NA	unknown function
UHGV-0108189_29	UniRef90	UniRef90_A0A7X9H6W0	XkdX family protein	NA
UHGV-0108189_29	eggNOG-mapper	697281.Mahau_0596	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-0108189_29	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0108189_29	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0108189_29	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0108189_30	PHROG	phrog_1863	NA	unknown function
UHGV-0108189_30	eggNOG-mapper	552398.HMPREF0866_01158	NA	NA
UHGV-0108189_31	PHROG	phrog_13256	NA	unknown function
UHGV-0108189_31	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA
UHGV-0108189_33	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0108189_33	PHROG	phrog_435	endolysin	lysis
UHGV-0108189_33	UniRef90	UniRef90_UPI001C107E48	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0108189_33	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0108189_33	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0108189_33	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0108189_33	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0108189_33	Structural annotation	PF01520, PF09992, MF_00562, TIGR02883, COG0860, COG4632	NA	NA
UHGV-0108189_34	KOfam	K14059	int; integrase	NA
UHGV-0108189_34	PHROG	phrog_1	integrase	integration and excision
UHGV-0108189_34	UniRef90	UniRef90_A0A3D4D8C4	Integrase	NA
UHGV-0108189_34	eggNOG-mapper	693746.OBV_19730	Belongs to the 'phage' integrase family	NA
UHGV-0108189_34	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0108189_34	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0108189_34	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0108189_35	PHROG	phrog_1847	NA	unknown function
UHGV-0108189_35	UniRef90	UniRef90_A0A1C5XXD7	T5orf172 domain	NA
UHGV-0108189_35	eggNOG-mapper	1121287.AUMU01000001_gene1311	T5orf172	NA
UHGV-0108189_35	Pfam	PF13250	NA	DUF4041
UHGV-0108189_35	Pfam	PF13455	Meiotically up-regulated gene 113	MUG113
UHGV-0108189_35	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0108189_35	Structural annotation	PF02970, NF041454	NA	NA
UHGV-0108189_36	PHROG	phrog_87	metallo-protease	other
UHGV-0108189_36	UniRef90	UniRef90_UPI00195AE3BC	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0108189_36	eggNOG-mapper	1007096.BAGW01000011_gene2354	IrrE N-terminal-like domain	NA
UHGV-0108189_36	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0108189_36	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0108189_36	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0108189_37	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0108189_37	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0108189_37	UniRef90	UniRef90_UPI00195603C9	helix-turn-helix domain-containing protein	NA
UHGV-0108189_37	eggNOG-mapper	1121344.JHZO01000003_gene989	PFAM helix-turn-helix domain protein	NA
UHGV-0108189_37	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108189_37	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0108189_37	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0108189_38	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0108189_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0108189_38	UniRef90	UniRef90_A0A2K9P4T7	Helix-turn-helix domain protein	NA
UHGV-0108189_38	eggNOG-mapper	938278.CAJO01000073_gene1356	Helix-turn-helix XRE-family like proteins	NA
UHGV-0108189_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108189_38	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0108189_41	PHROG	phrog_6058	NA	unknown function
UHGV-0108189_41	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-0108189_41	Structural annotation	PF12728, TIGR01764	NA	NA
UHGV-0108189_44	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0108189_44	UniRef90	UniRef90_A0A8J6MF41	Helix-turn-helix domain-containing protein	NA
UHGV-0108189_44	eggNOG-mapper	1226322.HMPREF1545_00094	DnaD domain protein	NA
UHGV-0108189_44	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0108189_44	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0108189_44	Structural annotation	PF20714, MF_01177, NF040582, COG3355	NA	NA
UHGV-0108189_45	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0108189_45	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0108189_45	UniRef90	UniRef90_A0A1Y3RP11	DNA helicase	NA
UHGV-0108189_45	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0108189_45	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0108189_45	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0108189_45	COG	COG0305	Replicative DNA helicase	NA
UHGV-0108189_45	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0108189_46	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0108189_46	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0108189_46	UniRef90	UniRef90_UPI001F3C1DB2	ParA family protein	NA
UHGV-0108189_46	eggNOG-mapper	742738.HMPREF9460_00854	4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family	NA
UHGV-0108189_46	Pfam	PF13614	AAA domain	AAA_31
UHGV-0108189_46	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0108189_46	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0108189_47	PHROG	phrog_15609	NA	unknown function
UHGV-0108189_47	eggNOG-mapper	1226322.HMPREF1545_00098	NA	NA
UHGV-0108189_47	Pfam	PF11300	NA	DUF3102
UHGV-0108189_47	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0108189_49	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0108189_49	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0108189_49	UniRef90	UniRef90_UPI0012489F18	single-stranded DNA-binding protein	NA
UHGV-0108189_49	eggNOG-mapper	411467.BACCAP_02389	Single-strand binding protein family	NA
UHGV-0108189_49	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0108189_49	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0108189_49	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0108189_49	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0108189_49	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0108189_51	UniRef90	UniRef90_UPI001958DC75	NA	NA
UHGV-0108189_51	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0108189_51	Structural annotation	PF04448	NA	NA
UHGV-0108189_53	PHROG	phrog_38832	NA	unknown function
UHGV-0108189_53	eggNOG-mapper	445972.ANACOL_00165	NA	NA
UHGV-0108189_53	Structural annotation	PF11717, TIGR02450	NA	NA
UHGV-0108189_54	PHROG	phrog_1384	Mom-like DNA modification protein	other
UHGV-0108189_54	eggNOG-mapper	665956.HMPREF1032_03086	COG NOG12663 non supervised orthologous group	NA
UHGV-0108189_54	Structural annotation	PF11124, MF_02210, NF040502, COG3818	NA	NA
UHGV-0108189_59	Structural annotation	PF19070	NA	NA
UHGV-0108189_61	Structural annotation	NF041677	NA	NA
UHGV-0108189_62	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0108189_62	eggNOG-mapper	742738.HMPREF9460_00867	NA	NA
UHGV-0108189_62	Structural annotation	PF01446, NF041486	NA	NA
UHGV-0108189_63	eggNOG-mapper	742738.HMPREF9460_00868	Cysteine-rich KTR	NA
UHGV-0108189_63	Structural annotation	PF14205	NA	NA
UHGV-0108189_64	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0108189_64	UniRef90	UniRef90_UPI001031C755	HNH endonuclease	NA
UHGV-0108189_64	eggNOG-mapper	742738.HMPREF9460_00869	HNH endonuclease	NA
UHGV-0108189_64	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0108189_64	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0108189_65	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0108189_65	UniRef90	UniRef90_UPI001F1C7CBA	phage terminase small subunit P27 family	NA
UHGV-0108189_65	eggNOG-mapper	742738.HMPREF9460_00871	phage terminase, small subunit	NA
UHGV-0108189_65	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0108189_65	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0108189_65	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0108189_65	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0108189_66	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0108189_66	UniRef90	UniRef90_UPI000B364CC2	terminase large subunit	NA
UHGV-0108189_66	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0108189_66	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0108189_66	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0108189_66	Structural annotation	PF03354	NA	NA