UHGV-0108209

Genome information

Genome length 23,115 bps

CDS count 38

Completeness 57.28% (medium-quality)

geNomad score 0.9723

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108209
vOTU ID	vOTU-042410
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_245345
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	57.28% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9723
Virus hallmark genes (geNomad)	3
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.18
Jumbo phage	No

Genome content
Genome length	23,115 bps
GC content	44.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	38
CDS density	88.86%
Average CDS length	545.61 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108209_1	eggNOG-mapper	411461.DORFOR_01165	NA	NA
UHGV-0108209_2	PHROG	phrog_30750	NA	unknown function
UHGV-0108209_3	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0108209_3	UniRef90	UniRef90_UPI00157127C3	minor capsid protein	NA
UHGV-0108209_3	eggNOG-mapper	742733.HMPREF9469_01825	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0108209_3	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0108209_3	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0108209_3	COG	COG2369	NA	NA
UHGV-0108209_3	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0108209_4	PHROG	phrog_64	portal protein	head and packaging
UHGV-0108209_4	UniRef90	UniRef90_A0A2V2D7F4	Phage portal protein	NA
UHGV-0108209_4	eggNOG-mapper	742733.HMPREF9469_01826	Phage portal protein, SPP1 family	NA
UHGV-0108209_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0108209_4	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0108209_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0108209_5	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0108209_5	PHROG	phrog_10250	NA	unknown function
UHGV-0108209_5	UniRef90	UniRef90_A0A2V2D9F3	PBSX family phage terminase large subunit	NA
UHGV-0108209_5	eggNOG-mapper	903814.ELI_3215	Phage terminase large subunit	NA
UHGV-0108209_5	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0108209_5	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0108209_5	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0108209_5	COG	COG1783	Phage terminase large subunit	NA
UHGV-0108209_5	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0108209_6	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0108209_6	UniRef90	UniRef90_UPI0004BAB6EB	DNA-packaging protein	NA
UHGV-0108209_6	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0108209_6	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0108209_6	Structural annotation	PF16677	NA	NA
UHGV-0108209_8	PHROG	phrog_9479	NA	unknown function
UHGV-0108209_8	eggNOG-mapper	511680.BUTYVIB_01226	NA	NA
UHGV-0108209_8	Structural annotation	PF15529	NA	NA
UHGV-0108209_9	PHROG	phrog_8680	NA	unknown function
UHGV-0108209_9	UniRef90	UniRef90_UPI0015711ED3	NA	NA
UHGV-0108209_9	eggNOG-mapper	411470.RUMGNA_02208	NA	NA
UHGV-0108209_9	Pfam	PF14386	NA	DUF4417
UHGV-0108209_9	Structural annotation	PF14386	NA	NA
UHGV-0108209_11	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0108209_11	UniRef90	UniRef90_A0A564VXK1	Sigma70_r4 domain-containing protein	NA
UHGV-0108209_11	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0108209_11	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0108209_12	UniRef90	UniRef90_A0A3E4M3S1	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0108209_16	PHROG	phrog_15198	NA	unknown function
UHGV-0108209_16	UniRef90	UniRef90_UPI0019173E66	NA	NA
UHGV-0108209_16	eggNOG-mapper	478749.BRYFOR_07594	NA	NA
UHGV-0108209_16	Pfam	PF04448	NA	DUF551
UHGV-0108209_18	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0108209_18	UniRef90	UniRef90_A0A1C5QSA5	Superfamily II helicase and inactivated derivatives	NA
UHGV-0108209_18	eggNOG-mapper	476272.RUMHYD_01742	NA	NA
UHGV-0108209_18	Pfam	PF06048	NA	DUF927
UHGV-0108209_18	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0108209_18	COG	COG5519	NA	NA
UHGV-0108209_18	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0108209_19	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0108209_19	PHROG	phrog_11992	NA	unknown function
UHGV-0108209_19	UniRef90	UniRef90_A0A1C5QS34	DNA primase	NA
UHGV-0108209_19	eggNOG-mapper	476272.RUMHYD_01741	CHC2 zinc finger	NA
UHGV-0108209_19	PADLOC	drt-UG29	DRT	DRT
UHGV-0108209_19	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0108209_19	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0108209_19	Structural annotation	PF01807	NA	NA
UHGV-0108209_20	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0108209_20	UniRef90	UniRef90_A0A1C5QRV1	ERCC4 domain-containing protein	NA
UHGV-0108209_20	eggNOG-mapper	411460.RUMTOR_02068	NA	NA
UHGV-0108209_20	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0108209_20	Structural annotation	PF03834, NF040956, COG1948	NA	NA
UHGV-0108209_21	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0108209_21	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0108209_21	UniRef90	UniRef90_A0A1C5QS41	Single-stranded DNA-binding protein	NA
UHGV-0108209_21	eggNOG-mapper	658655.HMPREF0988_02584	Single-strand binding protein family	NA
UHGV-0108209_21	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0108209_21	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0108209_21	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0108209_21	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0108209_21	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0108209_22	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0108209_22	UniRef90	UniRef90_A0A1C5QRZ7	ERF superfamily	NA
UHGV-0108209_22	eggNOG-mapper	411460.RUMTOR_02066	ERF superfamily	NA
UHGV-0108209_22	Pfam	PF04404	ERF superfamily	ERF
UHGV-0108209_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0108209_22	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0108209_23	PHROG	phrog_674	NA	unknown function
UHGV-0108209_23	UniRef90	UniRef90_A0A373SW80	NA	NA
UHGV-0108209_23	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0108209_23	Pfam	PF07083	NA	DUF1351
UHGV-0108209_23	Structural annotation	PF07083	NA	NA
UHGV-0108209_25	Structural annotation	PF19128	NA	NA
UHGV-0108209_26	PHROG	phrog_3777	NA	unknown function
UHGV-0108209_26	UniRef90	UniRef90_UPI00142FF24A	NA	NA
UHGV-0108209_26	eggNOG-mapper	411462.DORLON_00813	NA	NA
UHGV-0108209_26	Structural annotation	PF18441	NA	NA
UHGV-0108209_28	PHROG	phrog_6058	NA	unknown function
UHGV-0108209_28	UniRef90	UniRef90_A0A1C5QR48	Helix-turn-helix	NA
UHGV-0108209_28	eggNOG-mapper	742740.HMPREF9474_02381	NA	NA
UHGV-0108209_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108209_28	Structural annotation	PF01381, PF12728, MF_00535, NF041951, COG1396	NA	NA
UHGV-0108209_33	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0108209_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0108209_33	UniRef90	UniRef90_UPI00156D6DB8	helix-turn-helix transcriptional regulator	NA
UHGV-0108209_33	eggNOG-mapper	887325.HMPREF0381_0352	Helix-turn-helix XRE-family like proteins	NA
UHGV-0108209_33	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0108209_33	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0108209_33	Structural annotation	PF01381, NF041951, COG2944	NA	NA
UHGV-0108209_35	UniRef90	UniRef90_A0A1C6J701	Helix-turn-helix	NA
UHGV-0108209_35	eggNOG-mapper	1280698.AUJS01000007_gene1001	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0108209_35	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108209_35	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0108209_36	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0108209_36	UniRef90	UniRef90_UPI0015700369	restriction endonuclease	NA
UHGV-0108209_36	eggNOG-mapper	411459.RUMOBE_01428	Restriction endonuclease	NA
UHGV-0108209_36	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0108209_36	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0108209_36	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0108209_37	PHROG	phrog_5319	outer membrane protein	other
UHGV-0108209_37	UniRef90	UniRef90_UPI00156DD7EE	zinc ribbon domain-containing protein	NA
UHGV-0108209_37	eggNOG-mapper	1235802.C823_04880	NA	NA
UHGV-0108209_37	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0108209_38	KOfam	K14059	int; integrase	NA
UHGV-0108209_38	PHROG	phrog_1	integrase	integration and excision
UHGV-0108209_38	UniRef90	UniRef90_UPI00191722F2	site-specific integrase	NA
UHGV-0108209_38	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0108209_38	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0108209_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0108209_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0108209_38	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA