UHGV-0108241

Genome information

Genome length 23,321 bps

CDS count 32

Completeness 60.15% (medium-quality)

geNomad score 0.9781

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108241
vOTU ID	vOTU-021544
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_245212
BioSample	SAMEA3708848
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.15% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9781
Virus hallmark genes (geNomad)	11
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.97
Jumbo phage	No

Genome content
Genome length	23,321 bps
GC content	43.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	32
CDS density	93.20%
Average CDS length	680.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108241_3	PHROG	phrog_7344	terminase small subunit	head and packaging
UHGV-0108241_3	UniRef90	UniRef90_UPI0018843F2A	helix-turn-helix domain-containing protein	NA
UHGV-0108241_3	eggNOG-mapper	97137.C821_00678	NA	NA
UHGV-0108241_3	Structural annotation	PF13022	NA	NA
UHGV-0108241_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0108241_4	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0108241_4	UniRef90	UniRef90_A0A0R1P1I8	Phage terminase, large subunit, PBSX family	NA
UHGV-0108241_4	eggNOG-mapper	908339.HMPREF9265_1614	Terminase-like family	NA
UHGV-0108241_4	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0108241_4	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0108241_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0108241_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0108241_4	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0108241_5	PHROG	phrog_64	portal protein	head and packaging
UHGV-0108241_5	UniRef90	UniRef90_A0A0D4CJA9	Portal protein	NA
UHGV-0108241_5	eggNOG-mapper	908339.HMPREF9265_1613	Phage portal protein	NA
UHGV-0108241_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0108241_5	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0108241_5	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0108241_6	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0108241_6	UniRef90	UniRef90_UPI001F0474D1	minor capsid protein	NA
UHGV-0108241_6	eggNOG-mapper	349123.Lreu23DRAFT_4211	Phage Mu protein F like protein	NA
UHGV-0108241_6	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0108241_6	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0108241_6	COG	COG2369	NA	NA
UHGV-0108241_6	Structural annotation	PF06152, MF_04142, TIGR01641	NA	NA
UHGV-0108241_7	eggNOG-mapper	1423755.BAML01000009_gene818	NA	NA
UHGV-0108241_8	PHROG	phrog_3675	NA	unknown function
UHGV-0108241_8	UniRef90	UniRef90_A0A0D4CJ13	Head protein	NA
UHGV-0108241_8	eggNOG-mapper	257314.LJ_1435	YjcQ protein	NA
UHGV-0108241_8	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0108241_8	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0108241_9	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0108241_9	UniRef90	UniRef90_A0A7H9CSL4	NA	NA
UHGV-0108241_9	eggNOG-mapper	908339.HMPREF9265_0944	NA	NA
UHGV-0108241_9	Pfam	PF14265	NA	DUF4355
UHGV-0108241_9	Structural annotation	PF14265	NA	NA
UHGV-0108241_10	PHROG	phrog_544	major head protein	head and packaging
UHGV-0108241_10	UniRef90	UniRef90_A0A099YEW5	Head protein	NA
UHGV-0108241_10	eggNOG-mapper	1329250.WOSG25_061410	NA	NA
UHGV-0108241_10	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0108241_10	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0108241_11	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0108241_11	UniRef90	UniRef90_A0A0D4CJB4	NA	NA
UHGV-0108241_11	eggNOG-mapper	908339.HMPREF9265_0942	Phage gp6-like head-tail connector protein	NA
UHGV-0108241_11	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0108241_11	Structural annotation	PF05135	NA	NA
UHGV-0108241_12	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0108241_12	UniRef90	UniRef90_Q037E1	NA	NA
UHGV-0108241_12	eggNOG-mapper	908339.HMPREF9265_0941	NA	NA
UHGV-0108241_12	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0108241_13	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0108241_13	UniRef90	UniRef90_A0A0D4CJU8	NA	NA
UHGV-0108241_13	eggNOG-mapper	1567453.A0A0A1ENQ3_9CAUD	exonuclease activity	NA
UHGV-0108241_13	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0108241_13	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0108241_14	PHROG	phrog_176	tail terminator	connector
UHGV-0108241_14	UniRef90	UniRef90_A0A0D4CJ16	Phage major structural protein	NA
UHGV-0108241_14	eggNOG-mapper	908339.HMPREF9265_0939	NA	NA
UHGV-0108241_14	Structural annotation	PF11367	NA	NA
UHGV-0108241_15	PHROG	phrog_238	major tail protein	tail
UHGV-0108241_15	UniRef90	UniRef90_A0A0D4CJ52	Phage tail protein	NA
UHGV-0108241_15	eggNOG-mapper	908339.HMPREF9265_0938	Phage tail tube protein	NA
UHGV-0108241_15	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0108241_15	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0108241_16	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0108241_16	UniRef90	UniRef90_A0A1H0C9M6	Phage tail assembly chaperone protein, TAC	NA
UHGV-0108241_16	eggNOG-mapper	908339.HMPREF9265_0937	Phage tail assembly chaperone protein, TAC	NA
UHGV-0108241_16	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0108241_16	Structural annotation	PF12363	NA	NA
UHGV-0108241_17	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0108241_17	UniRef90	UniRef90_A0A0F4LEH9	NA	NA
UHGV-0108241_17	eggNOG-mapper	543734.LCABL_13390	NA	NA
UHGV-0108241_18	PHROG	phrog_1204	tail protein	tail
UHGV-0108241_18	UniRef90	UniRef90_A0A1H0C9X0	Tape measure domain-containing protein	NA
UHGV-0108241_18	eggNOG-mapper	1158602.I590_00638	nuclear chromosome segregation	NA
UHGV-0108241_18	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0108241_18	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0108241_18	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0108241_18	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0108241_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0108241_19	UniRef90	UniRef90_A0A0D4CJR0	NA	NA
UHGV-0108241_19	eggNOG-mapper	349123.Lreu23DRAFT_4199	phage tail	NA
UHGV-0108241_19	COG	COG4722	Phage-related protein YomH	NA
UHGV-0108241_19	Structural annotation	PF20195, PF21621, TIGR01633, COG4722	NA	NA
UHGV-0108241_20	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0108241_20	PHROG	phrog_3558	tail protein	tail
UHGV-0108241_20	UniRef90	UniRef90_A0A1H0CAD6	Peptidase family M23	NA
UHGV-0108241_20	eggNOG-mapper	349123.Lreu23DRAFT_4198	Prophage endopeptidase tail	NA
UHGV-0108241_20	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0108241_20	COG	COG4926	Phage-related protein	NA
UHGV-0108241_20	Structural annotation	PF14594, PF01551, PF06605, TIGR01665, COG4379, COG0739	NA	NA
UHGV-0108241_22	PHROG	phrog_10512	virion structural protein	head and packaging
UHGV-0108241_22	UniRef90	UniRef90_UPI00136C98EA	BppU family phage baseplate upper protein	NA
UHGV-0108241_22	eggNOG-mapper	944562.HMPREF9102_0426	Calcineurin-like phosphoesterase	NA
UHGV-0108241_22	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0108241_22	Structural annotation	PF18667, PF10651	NA	NA
UHGV-0108241_23	PHROG	phrog_341	major tail protein	tail
UHGV-0108241_23	UniRef90	UniRef90_A0A0D4CJ57	Tail protein	NA
UHGV-0108241_23	eggNOG-mapper	203275.BFO_0574	Bacterial group 2 Ig-like protein	NA
UHGV-0108241_23	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0108241_23	COG	COG5492	NA	NA
UHGV-0108241_23	Structural annotation	PF02368, PF07495, MF_04116, COG5492	NA	NA
UHGV-0108241_24	UniRef90	UniRef90_UPI0009BC2423	fibronectin type III domain-containing protein	NA
UHGV-0108241_24	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0108241_24	Pfam	PF18667	Baseplate upper protein immunoglobulin like domain	BppU_IgG
UHGV-0108241_24	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0108241_24	Structural annotation	PF18667	NA	NA
UHGV-0108241_25	Structural annotation	PF08931	NA	NA
UHGV-0108241_26	PHROG	phrog_1766	tail fiber protein	tail
UHGV-0108241_27	PHROG	phrog_134	NA	unknown function
UHGV-0108241_27	UniRef90	UniRef90_A0A7L9VT99	XkdX family protein	NA
UHGV-0108241_27	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0108241_27	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0108241_28	PHROG	phrog_199	holin	lysis
UHGV-0108241_28	UniRef90	UniRef90_A0A7H9EIY1	Holin	NA
UHGV-0108241_28	eggNOG-mapper	908339.HMPREF9265_0924	Bacteriophage holin family	NA
UHGV-0108241_28	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0108241_28	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0108241_28	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0108241_28	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0108241_29	PHROG	phrog_2609	holin	lysis
UHGV-0108241_29	UniRef90	UniRef90_UPI000C1EC8EB	phage holin, LLH family	NA
UHGV-0108241_29	eggNOG-mapper	349123.Lreu23DRAFT_3976	Bacteriophage holin of superfamily 6 (Holin_LLH)	NA
UHGV-0108241_29	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0108241_29	Structural annotation	PF09682, TIGR01673	NA	NA
UHGV-0108241_30	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0108241_30	PHROG	phrog_291	endolysin	lysis
UHGV-0108241_30	UniRef90	UniRef90_UPI0006527127	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0108241_30	eggNOG-mapper	349123.Lreu23DRAFT_3849	hydrolase, family 25	NA
UHGV-0108241_30	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0108241_30	Pfam	PF01476	LysM domain	LysM
UHGV-0108241_30	Pfam	PF00570	HRDC domain	HRDC
UHGV-0108241_30	NCBIFam	TIGR02899.1	SafA/ExsA family spore coat assembly protein	NA
UHGV-0108241_30	COG	COG1388	LysM repeat	NA
UHGV-0108241_30	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0108241_31	UniRef90	UniRef90_UPI0010F4D4A0	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0108241_31	eggNOG-mapper	1423775.BAMN01000002_gene2065	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0108241_31	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0108241_31	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0108241_32	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0108241_32	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0108241_32	UniRef90	UniRef90_A0A1B3PW83	HicB-like domain-containing protein	NA
UHGV-0108241_32	eggNOG-mapper	349123.Lreu23DRAFT_3134	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0108241_32	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0108241_32	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0108241_32	Structural annotation	PF15919, COG1598	NA	NA