UHGV-0108363

Genome information

Genome length 35,131 bps

CDS count 48

Completeness 76.33% (medium-quality)

geNomad score 0.9800

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108363
vOTU ID	vOTU-025501
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_241736
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	76.33% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	29
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9800
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	82.66
Jumbo phage	No

Genome content
Genome length	35,131 bps
GC content	33.50%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	92.36%
Average CDS length	678.13 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108363_3	PHROG	phrog_32514	NA	unknown function
UHGV-0108363_4	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0108363_4	PHROG	phrog_670	endolysin	lysis
UHGV-0108363_4	UniRef90	UniRef90_R7KX59	Muramidase (Flagellum-specific)	NA
UHGV-0108363_4	eggNOG-mapper	1163671.JAGI01000002_gene1233	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0108363_4	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0108363_4	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0108363_4	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0108363_5	PHROG	phrog_443	holin	lysis
UHGV-0108363_5	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0108363_5	eggNOG-mapper	1235800.C819_01425	Putative lactococcus lactis phage r1t holin	NA
UHGV-0108363_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0108363_5	Structural annotation	PF16945	NA	NA
UHGV-0108363_6	PHROG	phrog_4105	NA	unknown function
UHGV-0108363_6	eggNOG-mapper	755731.Clo1100_0561	NA	NA
UHGV-0108363_9	PHROG	phrog_521	tail protein	tail
UHGV-0108363_9	UniRef90	UniRef90_UPI001030D34A	NA	NA
UHGV-0108363_9	eggNOG-mapper	97138.C820_00245	NA	NA
UHGV-0108363_9	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0108363_9	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0108363_9	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0108363_10	PHROG	phrog_6	baseplate protein	tail
UHGV-0108363_10	UniRef90	UniRef90_R6PLC6	Baseplate J family protein	NA
UHGV-0108363_10	eggNOG-mapper	588581.Cpap_2572	Baseplate J-like protein	NA
UHGV-0108363_10	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0108363_10	COG	COG3299	NA	NA
UHGV-0108363_10	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0108363_11	PHROG	phrog_120	baseplate protein	tail
UHGV-0108363_11	UniRef90	UniRef90_UPI001BAAFB4D	NA	NA
UHGV-0108363_11	eggNOG-mapper	1582156.A0A0A8WFW6_9CAUD	lytic transglycosylase activity	NA
UHGV-0108363_11	Pfam	PF10934	NA	DUF2634
UHGV-0108363_11	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0108363_12	UniRef90	UniRef90_A0A2G5RRZ8	NA	NA
UHGV-0108363_12	eggNOG-mapper	1151292.QEW_1352	NA	NA
UHGV-0108363_12	Pfam	PF10844	NA	DUF2577
UHGV-0108363_12	Structural annotation	PF10844	NA	NA
UHGV-0108363_13	PHROG	phrog_400	tail protein	tail
UHGV-0108363_13	UniRef90	UniRef90_A0A316P7U0	CHAP domain-containing protein	NA
UHGV-0108363_13	eggNOG-mapper	642492.Clole_2744	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0108363_13	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0108363_13	Structural annotation	PF14594, NF033848, NF033742, COG4379	NA	NA
UHGV-0108363_14	PHROG	phrog_380	endolysin	lysis
UHGV-0108363_14	UniRef90	UniRef90_A0A173XS95	LysM domain/BON superfamily protein	NA
UHGV-0108363_14	eggNOG-mapper	1298920.KI911353_gene534	Lysin motif	NA
UHGV-0108363_14	Pfam	PF01476	LysM domain	LysM
UHGV-0108363_14	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0108363_14	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0108363_15	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0108363_15	UniRef90	UniRef90_A0A173SDK0	Phage-related minor tail protein	NA
UHGV-0108363_15	eggNOG-mapper	742740.HMPREF9474_02344	tape measure	NA
UHGV-0108363_15	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0108363_15	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0108363_15	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0108363_15	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0108363_16	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0108363_16	UniRef90	UniRef90_C0DAH8	Phage XkdN-like protein	NA
UHGV-0108363_16	eggNOG-mapper	397288.C806_00124	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0108363_16	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0108363_16	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0108363_17	PHROG	phrog_365	tail protein	tail
UHGV-0108363_17	UniRef90	UniRef90_R6PBH3	NA	NA
UHGV-0108363_17	eggNOG-mapper	742740.HMPREF9474_02346	Phage tail tube protein	NA
UHGV-0108363_17	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0108363_17	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-0108363_18	PHROG	phrog_279	tail sheath	tail
UHGV-0108363_18	UniRef90	UniRef90_A0A7Z0PN32	Phage tail sheath subtilisin-like domain-containing protein	NA
UHGV-0108363_18	eggNOG-mapper	1195236.CTER_3997	Phage tail sheath C-terminal domain	NA
UHGV-0108363_18	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0108363_18	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0108363_18	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0108363_18	Structural annotation	PF04984, PF17482, PF17481, COG4386	NA	NA
UHGV-0108363_19	PHROG	phrog_966	NA	unknown function
UHGV-0108363_19	eggNOG-mapper	1321779.HMPREF1984_01300	NA	NA
UHGV-0108363_20	PHROG	phrog_525	NA	unknown function
UHGV-0108363_20	UniRef90	UniRef90_R6PDQ8	NA	NA
UHGV-0108363_20	eggNOG-mapper	742740.HMPREF9474_02349	NA	NA
UHGV-0108363_20	Pfam	PF20765	NA	DUF6838
UHGV-0108363_20	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0108363_21	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0108363_21	UniRef90	UniRef90_UPI001900E7F0	HK97 gp10 family phage protein	NA
UHGV-0108363_21	eggNOG-mapper	743719.PaelaDRAFT_2404	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0108363_21	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0108363_21	Structural annotation	PF04883, COG5005	NA	NA
UHGV-0108363_22	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0108363_22	UniRef90	UniRef90_UPI001C0FD815	ABC transporter ATP-binding protein	NA
UHGV-0108363_22	eggNOG-mapper	861454.HMPREF9099_00612	NA	NA
UHGV-0108363_22	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0108363_23	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0108363_23	eggNOG-mapper	1321779.HMPREF1984_01304	NA	NA
UHGV-0108363_23	Structural annotation	PF05135	NA	NA
UHGV-0108363_24	PHROG	phrog_247	major head protein	head and packaging
UHGV-0108363_24	UniRef90	UniRef90_M1ZSE2	Phage capsid protein	NA
UHGV-0108363_24	eggNOG-mapper	445335.CBN_2986	NA	NA
UHGV-0108363_24	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0108363_24	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0108363_25	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0108363_25	UniRef90	UniRef90_UPI001C013BCC	phage scaffolding protein	NA
UHGV-0108363_25	eggNOG-mapper	742740.HMPREF9474_02354	Phage minor structural protein GP20	NA
UHGV-0108363_25	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0108363_25	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-0108363_27	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0108363_27	UniRef90	UniRef90_R6PBF8	Phage putative head morphogenesis protein SPP1 gp7 family	NA
UHGV-0108363_27	eggNOG-mapper	742740.HMPREF9474_02356	Phage head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0108363_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0108363_27	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0108363_27	COG	COG2369	NA	NA
UHGV-0108363_28	PHROG	phrog_64	portal protein	head and packaging
UHGV-0108363_28	UniRef90	UniRef90_UPI001D05D7B4	phage portal protein	NA
UHGV-0108363_28	eggNOG-mapper	1408823.AXUS01000024_gene2713	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0108363_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0108363_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0108363_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0108363_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0108363_29	UniRef90	UniRef90_A0A415TAM3	PBSX family phage terminase large subunit	NA
UHGV-0108363_29	eggNOG-mapper	608534.GCWU000341_02297	Phage terminase, large subunit, PBSX family	NA
UHGV-0108363_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0108363_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0108363_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0108363_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0108363_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0108363_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0108363_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0108363_30	UniRef90	UniRef90_D6LEP4	Prophage LambdaCh01, terminase, small subunit	NA
UHGV-0108363_30	eggNOG-mapper	883156.HMPREF9282_00945	terminase, small subunit	NA
UHGV-0108363_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0108363_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0108363_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0108363_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0108363_31	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0108363_31	UniRef90	UniRef90_A0A1Y3WUW3	HNHc domain-containing protein	NA
UHGV-0108363_31	eggNOG-mapper	634498.mru_0269	Belongs to the MCM family	NA
UHGV-0108363_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0108363_31	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0108363_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0108363_32	UniRef90	UniRef90_A0A2V2GJ29	Sigma70_r4 domain-containing protein	NA
UHGV-0108363_32	eggNOG-mapper	1235800.C819_02243	NA	NA
UHGV-0108363_32	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0108363_36	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0108363_36	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0108363_36	UniRef90	UniRef90_A0A0U3FEM1	Endodeoxyribonuclease RusA family protein	NA
UHGV-0108363_36	eggNOG-mapper	1123263.AUKY01000072_gene2102	Endodeoxyribonuclease RusA	NA
UHGV-0108363_36	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0108363_36	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0108363_36	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0108363_37	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0108363_37	eggNOG-mapper	1158602.I590_00669	Replication initiation and membrane attachment	NA
UHGV-0108363_37	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0108363_37	Structural annotation	PF19481, PF04492, TIGR01610, COG5529	NA	NA
UHGV-0108363_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0108363_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0108363_38	UniRef90	UniRef90_R6PGX1	Single-stranded DNA-binding protein	NA
UHGV-0108363_38	eggNOG-mapper	1235790.C805_03410	Single-stranded DNA-binding protein	NA
UHGV-0108363_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0108363_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0108363_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0108363_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0108363_38	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0108363_39	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0108363_39	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0108363_39	UniRef90	UniRef90_A0A7X8XIL0	MBL fold metallo-hydrolase	NA
UHGV-0108363_39	eggNOG-mapper	665956.HMPREF1032_03101	May be involved in the transport of PQQ or its precursor to the periplasm	NA
UHGV-0108363_39	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0108363_39	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0108363_39	Structural annotation	PF12706, MF_01818, TIGR03307, COG1234	NA	NA
UHGV-0108363_40	PHROG	phrog_2760	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0108363_40	UniRef90	UniRef90_R7FH02	Phage recombination protein Bet	NA
UHGV-0108363_40	eggNOG-mapper	1031288.AXAA01000044_gene1973	Phage recombination protein Bet	NA
UHGV-0108363_40	Pfam	PF03837	RecT family	RecT
UHGV-0108363_40	NCBIFam	TIGR01913.1	phage recombination protein Bet	NA
UHGV-0108363_40	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0108363_41	PHROG	phrog_674	NA	unknown function
UHGV-0108363_41	UniRef90	UniRef90_A0A847VXN8	NA	NA
UHGV-0108363_41	eggNOG-mapper	1408437.JNJN01000039_gene373	NA	NA
UHGV-0108363_41	Pfam	PF07083	NA	DUF1351
UHGV-0108363_41	Structural annotation	PF07083	NA	NA
UHGV-0108363_42	Structural annotation	NF040595	NA	NA
UHGV-0108363_45	UniRef90	UniRef90_A0A417IT45	NA	NA
UHGV-0108363_45	eggNOG-mapper	646413.C5IUM3_9CAUD	NA	NA
UHGV-0108363_45	Pfam	PF05339	NA	DUF739
UHGV-0108363_45	Structural annotation	PF05339, NF041575, COG3655	NA	NA
UHGV-0108363_46	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0108363_46	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0108363_46	UniRef90	UniRef90_UPI0018F8A818	helix-turn-helix domain-containing protein	NA
UHGV-0108363_46	eggNOG-mapper	903814.ELI_0076	Helix-turn-helix XRE-family like proteins	NA
UHGV-0108363_46	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0108363_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0108363_46	Structural annotation	PF12844, MF_00535, NF007257, COG3655	NA	NA
UHGV-0108363_47	PHROG	phrog_1914	NA	unknown function
UHGV-0108363_47	UniRef90	UniRef90_A0A3D4VT22	Peptidase_M78 domain-containing protein	NA
UHGV-0108363_47	eggNOG-mapper	1219626.HMPREF1639_07260	IrrE N-terminal-like domain	NA
UHGV-0108363_47	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0108363_47	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0108363_47	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0108363_48	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0108363_48	PHROG	phrog_95	integrase	integration and excision
UHGV-0108363_48	UniRef90	UniRef90_A0A7C6KR83	Recombinase family protein	NA
UHGV-0108363_48	eggNOG-mapper	1291050.JAGE01000001_gene683	Resolvase, N-terminal domain protein	NA
UHGV-0108363_48	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0108363_48	Pfam	PF07508	Recombinase	Recombinase
UHGV-0108363_48	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0108363_48	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0108363_48	Structural annotation	PF07508, NF041201	NA	NA