UHGV-0108365

Genome information

Genome length 36,304 bps

CDS count 61

Completeness 90.56% (high-quality)

geNomad score 0.9822

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108365
vOTU ID	vOTU-061591
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_241739
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.56% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9822
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	72.39
Jumbo phage	No

Genome content
Genome length	36,304 bps
GC content	42.08%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	91.63%
Average CDS length	549.89 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108365_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0108365_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0108365_1	UniRef90	UniRef90_A7B3P5	Resolvase, N-terminal domain protein	NA
UHGV-0108365_1	eggNOG-mapper	411470.RUMGNA_02175	Resolvase, N terminal domain	NA
UHGV-0108365_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0108365_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0108365_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0108365_1	Structural annotation	PF00239, NF041201, COG1961	NA	NA
UHGV-0108365_2	PHROG	phrog_1904	endolysin; lysM motif	lysis
UHGV-0108365_2	eggNOG-mapper	411470.RUMGNA_03228	NA	NA
UHGV-0108365_4	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0108365_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0108365_4	UniRef90	UniRef90_UPI001D04C7E1	helix-turn-helix domain-containing protein	NA
UHGV-0108365_4	eggNOG-mapper	397290.C810_05152	DNA-binding helix-turn-helix protein	NA
UHGV-0108365_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108365_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0108365_4	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0108365_8	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0108365_8	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0108365_8	UniRef90	UniRef90_A7B3Q4	AntA/AntB antirepressor	NA
UHGV-0108365_8	eggNOG-mapper	411470.RUMGNA_02184	Phage antirepressor protein	NA
UHGV-0108365_8	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0108365_8	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0108365_8	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0108365_8	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0108365_9	eggNOG-mapper	1235790.C805_00014	NA	NA
UHGV-0108365_11	PHROG	phrog_5070	NA	unknown function
UHGV-0108365_11	UniRef90	UniRef90_C6L9Y5	Bacterial transferase hexapeptide repeat protein	NA
UHGV-0108365_11	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0108365_11	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0108365_11	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0108365_11	Structural annotation	NF040481	NA	NA
UHGV-0108365_13	PHROG	phrog_30234	NA	unknown function
UHGV-0108365_13	eggNOG-mapper	411461.DORFOR_00021	NA	NA
UHGV-0108365_14	PHROG	phrog_659	Sak-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0108365_14	UniRef90	UniRef90_UPI001F180A96	NA	NA
UHGV-0108365_14	eggNOG-mapper	33035.JPJF01000135_gene5082	NA	NA
UHGV-0108365_14	Pfam	PF06378	NA	DUF1071
UHGV-0108365_14	Structural annotation	PF06378, TIGR00607, COG5055	NA	NA
UHGV-0108365_15	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0108365_15	eggNOG-mapper	411470.RUMGNA_02194	NA	NA
UHGV-0108365_15	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0108365_16	PHROG	phrog_7566	NA	unknown function
UHGV-0108365_16	UniRef90	UniRef90_UPI001D03E651	phosphoenolpyruvate carboxykinase	NA
UHGV-0108365_16	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0108365_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0108365_17	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0108365_17	UniRef90	UniRef90_A7B3R6	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0108365_17	eggNOG-mapper	411470.RUMGNA_02196	COG COG4570 Holliday junction resolvase	NA
UHGV-0108365_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0108365_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0108365_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0108365_18	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-0108365_18	UniRef90	UniRef90_UPI000E4F73A8	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0108365_18	eggNOG-mapper	565664.EFXG_01794	Phage replisome organizer, N-terminal domain protein	NA
UHGV-0108365_18	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0108365_18	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0108365_18	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0108365_18	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0108365_19	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0108365_19	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0108365_19	UniRef90	UniRef90_UPI000E4F0806	ATP-binding protein	NA
UHGV-0108365_19	eggNOG-mapper	203119.Cthe_2467	IstB-like ATP binding protein	NA
UHGV-0108365_19	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0108365_19	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0108365_19	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0108365_19	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0108365_20	PHROG	phrog_26445	NA	unknown function
UHGV-0108365_20	eggNOG-mapper	742765.HMPREF9457_02112	NA	NA
UHGV-0108365_24	Structural annotation	PF02895	NA	NA
UHGV-0108365_25	UniRef90	UniRef90_A0A395V1U8	Restriction alleviation protein, Lar family	NA
UHGV-0108365_25	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0108365_25	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0108365_27	eggNOG-mapper	537007.BLAHAN_05459	NA	NA
UHGV-0108365_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0108365_29	UniRef90	UniRef90_A7B3S5	Sigma70_r4 domain-containing protein	NA
UHGV-0108365_29	eggNOG-mapper	411470.RUMGNA_02205	Sigma-70, region 4	NA
UHGV-0108365_29	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0108365_29	Structural annotation	PF04545, MF_00245, NF001068, COG2739	NA	NA
UHGV-0108365_30	eggNOG-mapper	97139.C824_01317	NA	NA
UHGV-0108365_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0108365_31	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0108365_31	UniRef90	UniRef90_UPI0015705C52	terminase small subunit	NA
UHGV-0108365_31	eggNOG-mapper	1235792.C808_05330	Terminase small subunit	NA
UHGV-0108365_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0108365_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0108365_31	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0108365_32	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0108365_32	UniRef90	UniRef90_UPI00164E3225	phage terminase large subunit	NA
UHGV-0108365_32	eggNOG-mapper	411468.CLOSCI_00293	TIGRFAM Phage	NA
UHGV-0108365_32	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0108365_32	COG	COG5410	NA	NA
UHGV-0108365_32	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0108365_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0108365_33	UniRef90	UniRef90_A0A2N5PAZ2	Phage portal protein	NA
UHGV-0108365_33	eggNOG-mapper	1235796.C815_00925	Phage portal protein, SPP1 family	NA
UHGV-0108365_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0108365_33	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0108365_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-0108365_34	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0108365_34	UniRef90	UniRef90_A0A2N5P5J9	Phage_Mu_F domain-containing protein	NA
UHGV-0108365_34	eggNOG-mapper	1232453.BAIF02000011_gene3354	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0108365_34	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0108365_34	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0108365_34	COG	COG2369	NA	NA
UHGV-0108365_34	Structural annotation	PF04233, PF15529, TIGR01641, COG2369	NA	NA
UHGV-0108365_35	eggNOG-mapper	1304866.K413DRAFT_0808	NA	NA
UHGV-0108365_35	Structural annotation	PF10827	NA	NA
UHGV-0108365_36	KOfam	K07584	NA	NA
UHGV-0108365_36	PHROG	phrog_4478	peptidase	other
UHGV-0108365_36	UniRef90	UniRef90_A0A3A6GBX2	Ribosomal-processing cysteine protease Prp	NA
UHGV-0108365_36	eggNOG-mapper	411470.RUMGNA_03236	Cysteine protease Prp	NA
UHGV-0108365_36	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-0108365_36	COG	COG2868	NA	NA
UHGV-0108365_36	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-0108365_37	eggNOG-mapper	411470.RUMGNA_03237	NA	NA
UHGV-0108365_37	Structural annotation	PF08948, MF_01537, NF007541, COG3123	NA	NA
UHGV-0108365_38	eggNOG-mapper	411470.RUMGNA_02215	NA	NA
UHGV-0108365_40	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0108365_40	Structural annotation	NF040910	NA	NA
UHGV-0108365_41	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0108365_41	UniRef90	UniRef90_A0A3A5TW83	NA	NA
UHGV-0108365_41	eggNOG-mapper	936154.STP_1289	NA	NA
UHGV-0108365_41	Pfam	PF14265	NA	DUF4355
UHGV-0108365_41	Structural annotation	PF14265	NA	NA
UHGV-0108365_42	PHROG	phrog_840	major head protein	head and packaging
UHGV-0108365_42	UniRef90	UniRef90_A0A2N5P5Q7	Phage capsid protein	NA
UHGV-0108365_42	eggNOG-mapper	294382.Q5YA70_9CAUD	NA	NA
UHGV-0108365_42	Structural annotation	PF03864, MF_04119, TIGR04387, COG1659	NA	NA
UHGV-0108365_43	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0108365_43	UniRef90	UniRef90_UPI001D03FC16	phage head-tail connector protein	NA
UHGV-0108365_43	eggNOG-mapper	476272.RUMHYD_02856	Phage gp6-like head-tail connector protein	NA
UHGV-0108365_43	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0108365_43	Structural annotation	PF05135	NA	NA
UHGV-0108365_44	PHROG	phrog_348	minor head protein	head and packaging
UHGV-0108365_44	eggNOG-mapper	1235798.C817_03474	NA	NA
UHGV-0108365_44	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0108365_45	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0108365_45	UniRef90	UniRef90_UPI00195DCB77	HK97 gp10 family phage protein	NA
UHGV-0108365_45	eggNOG-mapper	476272.RUMHYD_02858	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0108365_45	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0108365_45	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0108365_45	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0108365_46	PHROG	phrog_176	tail terminator	connector
UHGV-0108365_46	UniRef90	UniRef90_UPI001E62787A	NA	NA
UHGV-0108365_46	eggNOG-mapper	476272.RUMHYD_02859	NA	NA
UHGV-0108365_46	Structural annotation	PF11367	NA	NA
UHGV-0108365_47	PHROG	phrog_238	major tail protein	tail
UHGV-0108365_47	UniRef90	UniRef90_A0A3A5TWF7	Phage major tail protein, TP901-1 family	NA
UHGV-0108365_47	eggNOG-mapper	1235798.C817_03471	Phage tail tube protein	NA
UHGV-0108365_47	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0108365_47	NCBIFam	TIGR02126.1	phage major tail protein, TP901-1 family	NA
UHGV-0108365_47	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0108365_48	PHROG	phrog_183	tail chaperone protein	tail
UHGV-0108365_48	UniRef90	UniRef90_A0A1M6RGW0	Phage tail assembly chaperone protein, TAC	NA
UHGV-0108365_48	eggNOG-mapper	476272.RUMHYD_02861	Phage tail assembly chaperone protein, TAC	NA
UHGV-0108365_48	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-0108365_48	Structural annotation	PF12363	NA	NA
UHGV-0108365_49	PHROG	phrog_441	tail assembly chaperone	tail
UHGV-0108365_49	UniRef90	UniRef90_A0A0K9N8J7	NA	NA
UHGV-0108365_49	eggNOG-mapper	1232453.BAIF02000011_gene3366	NA	NA
UHGV-0108365_50	PHROG	phrog_1204	tail protein	tail
UHGV-0108365_50	UniRef90	UniRef90_UPI00156DEE9A	tape measure protein	NA
UHGV-0108365_50	eggNOG-mapper	1232453.BAIF02000011_gene3367	phage tail tape measure protein	NA
UHGV-0108365_50	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0108365_50	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0108365_50	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0108365_50	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0108365_51	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0108365_51	UniRef90	UniRef90_A0A415S8D0	Phage tail family protein	NA
UHGV-0108365_51	eggNOG-mapper	411470.RUMGNA_02229	NA	NA
UHGV-0108365_51	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0108365_51	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0108365_51	COG	COG4722	Phage-related protein YomH	NA
UHGV-0108365_51	Structural annotation	PF05709, PF21708, TIGR01633, NF041449, COG4722, COG3506	NA	NA
UHGV-0108365_52	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0108365_52	UniRef90	UniRef90_A7B3U9	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0108365_52	eggNOG-mapper	411470.RUMGNA_02230	NA	NA
UHGV-0108365_52	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0108365_52	Structural annotation	PF14594, PF19081, MF_04116, TIGR01665, NF041894, COG4926	NA	NA
UHGV-0108365_53	eggNOG-mapper	608534.GCWU000341_02271	NA	NA
UHGV-0108365_54	PHROG	phrog_10091	holin	lysis
UHGV-0108365_54	UniRef90	UniRef90_A0A2N5P008	Phage holin	NA
UHGV-0108365_54	eggNOG-mapper	428127.EUBDOL_01206	COG5546 Small integral membrane protein	NA
UHGV-0108365_54	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0108365_54	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0108365_54	COG	COG5546	NA	NA
UHGV-0108365_54	Structural annotation	COG5546	NA	NA
UHGV-0108365_55	PHROG	phrog_1048	NA	unknown function
UHGV-0108365_55	UniRef90	UniRef90_UPI001E4F489A	NA	NA
UHGV-0108365_55	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0108365_55	Pfam	PF11195	NA	DUF2829
UHGV-0108365_55	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0108365_55	Structural annotation	PF11195	NA	NA
UHGV-0108365_57	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0108365_57	PHROG	phrog_435	endolysin	lysis
UHGV-0108365_57	UniRef90	UniRef90_A0A2N5NRG3	MurNAc-LAA domain-containing protein	NA
UHGV-0108365_57	eggNOG-mapper	411470.RUMGNA_02814	Ami_3	NA
UHGV-0108365_57	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0108365_57	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0108365_57	Structural annotation	PF01520, MF_00417, TIGR02883, COG0860	NA	NA
UHGV-0108365_58	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0108365_58	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0108365_58	UniRef90	UniRef90_A0A2N5NX43	HTH cro/C1-type domain-containing protein	NA
UHGV-0108365_58	eggNOG-mapper	411470.RUMGNA_03786	Helix-turn-helix XRE-family like proteins	NA
UHGV-0108365_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108365_58	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0108365_60	eggNOG-mapper	411470.RUMGNA_03785	NA	NA