UHGV-0108377

Genome information

vOTU vOTU-020891

Genome length 36,475 bps

CDS count 52

Completeness 87.68% (medium-quality)

geNomad score 0.9795

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108377
vOTU ID	vOTU-020891
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_249583
BioSample	SAMEA3708762
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	87.68% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9795
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	50.16
Jumbo phage	No

Genome content
Genome length	36,475 bps
GC content	47.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.24%
Average CDS length	642.40 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108377_1	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0108377_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0108377_1	UniRef90	UniRef90_A0A3A6KEM5	Integrase	NA
UHGV-0108377_1	eggNOG-mapper	610130.Closa_3343	Belongs to the 'phage' integrase family	NA
UHGV-0108377_1	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0108377_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0108377_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0108377_1	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0108377_3	PHROG	phrog_30004	NA	unknown function
UHGV-0108377_3	UniRef90	UniRef90_UPI001D07CC57	H-type lectin domain-containing protein	NA
UHGV-0108377_3	eggNOG-mapper	411902.CLOBOL_05647	nuclear chromosome segregation	NA
UHGV-0108377_3	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0108377_4	PHROG	phrog_521	tail protein	tail
UHGV-0108377_4	UniRef90	UniRef90_A0A3A6KNX0	NA	NA
UHGV-0108377_4	eggNOG-mapper	1095750.HMPREF9970_2283	NA	NA
UHGV-0108377_4	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0108377_4	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0108377_4	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0108377_5	PHROG	phrog_6	baseplate protein	tail
UHGV-0108377_5	UniRef90	UniRef90_A0A3A6K7W9	Phage tail protein	NA
UHGV-0108377_5	eggNOG-mapper	1095750.HMPREF9970_2282	baseplate J-like protein	NA
UHGV-0108377_5	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0108377_5	COG	COG3299	NA	NA
UHGV-0108377_5	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0108377_6	PHROG	phrog_120	baseplate protein	tail
UHGV-0108377_6	UniRef90	UniRef90_A0A417AC50	NA	NA
UHGV-0108377_6	eggNOG-mapper	1095750.HMPREF9970_2281	NA	NA
UHGV-0108377_6	Pfam	PF10934	NA	DUF2634
UHGV-0108377_6	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0108377_6	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0108377_7	UniRef90	UniRef90_A0A6N7WLK0	NA	NA
UHGV-0108377_7	Structural annotation	PF10844	NA	NA
UHGV-0108377_8	PHROG	phrog_400	tail protein	tail
UHGV-0108377_8	UniRef90	UniRef90_UPI001650FB1D	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0108377_8	eggNOG-mapper	1095750.HMPREF9970_2279	NLP P60 protein	NA
UHGV-0108377_8	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0108377_8	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0108377_9	KOfam	K21687	rpfA; resuscitation-promoting factor RpfA	NA
UHGV-0108377_9	PHROG	phrog_380	endolysin	lysis
UHGV-0108377_9	UniRef90	UniRef90_A0A3R6QGW9	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0108377_9	eggNOG-mapper	1095750.HMPREF9970_2278	LysM domain	NA
UHGV-0108377_9	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0108377_9	Pfam	PF01476	LysM domain	LysM
UHGV-0108377_9	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0108377_9	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0108377_10	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0108377_10	UniRef90	UniRef90_A0A417AC96	Phage tail tape measure protein	NA
UHGV-0108377_10	eggNOG-mapper	1095750.HMPREF9970_2277	Phage-related minor tail protein	NA
UHGV-0108377_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0108377_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0108377_10	COG	COG5283	Phage-related tail protein	NA
UHGV-0108377_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0108377_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0108377_11	UniRef90	UniRef90_A0A396MP04	HK97 gp10 family phage protein	NA
UHGV-0108377_11	eggNOG-mapper	397288.C806_00070	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0108377_11	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0108377_12	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0108377_12	UniRef90	UniRef90_I0R7P0	Phage XkdN-like protein	NA
UHGV-0108377_12	eggNOG-mapper	1095750.HMPREF9970_2276	PFAM Phage XkdN-like protein	NA
UHGV-0108377_12	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0108377_12	Structural annotation	PF08890	NA	NA
UHGV-0108377_13	PHROG	phrog_365	tail protein	tail
UHGV-0108377_13	UniRef90	UniRef90_I0R7M5	PF09393 family protein	NA
UHGV-0108377_13	eggNOG-mapper	1095750.HMPREF9970_2275	Phage tail tube protein	NA
UHGV-0108377_13	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0108377_13	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0108377_14	PHROG	phrog_1480	tail sheath	tail
UHGV-0108377_14	UniRef90	UniRef90_A0A3R6I7F4	Phage tail protein	NA
UHGV-0108377_14	eggNOG-mapper	1095750.HMPREF9970_2274	Phage tail sheath C-terminal domain	NA
UHGV-0108377_14	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0108377_14	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0108377_14	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0108377_15	PHROG	phrog_525	NA	unknown function
UHGV-0108377_15	eggNOG-mapper	1408324.JNJK01000006_gene1386	NA	NA
UHGV-0108377_15	Pfam	PF20765	NA	DUF6838
UHGV-0108377_15	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0108377_16	PHROG	phrog_25	head closure Hc1	connector
UHGV-0108377_16	UniRef90	UniRef90_A0A3A6KDE6	Head-tail adaptor protein	NA
UHGV-0108377_16	eggNOG-mapper	1095750.HMPREF9970_2271	Phage head-tail joining protein	NA
UHGV-0108377_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0108377_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0108377_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0108377_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0108377_17	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0108377_17	UniRef90	UniRef90_A0A3A6K1I0	Phage gp6-like head-tail connector protein	NA
UHGV-0108377_17	eggNOG-mapper	1095750.HMPREF9970_2270	Phage gp6-like head-tail connector protein	NA
UHGV-0108377_17	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0108377_17	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0108377_17	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0108377_18	PHROG	phrog_10	major head protein	head and packaging
UHGV-0108377_18	UniRef90	UniRef90_A0A417ABS4	Phage major capsid protein	NA
UHGV-0108377_18	eggNOG-mapper	97139.C824_05970	Phage major capsid protein, HK97 family	NA
UHGV-0108377_18	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0108377_18	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0108377_18	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0108377_18	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0108377_19	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0108377_19	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0108377_19	UniRef90	UniRef90_A0A3R6TKZ8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0108377_19	eggNOG-mapper	1095750.HMPREF9970_2268	Belongs to the peptidase S14 family	NA
UHGV-0108377_19	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0108377_19	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0108377_19	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0108377_20	PHROG	phrog_12	portal protein	head and packaging
UHGV-0108377_20	UniRef90	UniRef90_A0A3R6U3X2	Phage portal protein	NA
UHGV-0108377_20	eggNOG-mapper	1095750.HMPREF9970_2267	Phage portal protein, HK97 family	NA
UHGV-0108377_20	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0108377_20	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0108377_20	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0108377_20	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0108377_21	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0108377_21	UniRef90	UniRef90_A0A3A6K1R0	Terminase large subunit	NA
UHGV-0108377_21	eggNOG-mapper	1095750.HMPREF9970_2266	Phage terminase-like protein large subunit	NA
UHGV-0108377_21	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0108377_21	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0108377_21	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0108377_21	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0108377_22	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0108377_22	UniRef90	UniRef90_A0A417ACA4	Phage terminase small subunit P27 family	NA
UHGV-0108377_22	eggNOG-mapper	1095750.HMPREF9970_2265	Phage terminase, small subunit	NA
UHGV-0108377_22	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0108377_22	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0108377_22	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0108377_22	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0108377_23	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0108377_23	UniRef90	UniRef90_A0A849D0W5	HNH endonuclease	NA
UHGV-0108377_23	eggNOG-mapper	536233.CLO_1358	NA	NA
UHGV-0108377_24	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0108377_24	UniRef90	UniRef90_A0A417ACC5	XRE family transcriptional regulator	NA
UHGV-0108377_24	eggNOG-mapper	1415774.U728_2928	Helix-turn-helix XRE-family like proteins	NA
UHGV-0108377_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108377_24	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0108377_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0108377_25	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0108377_25	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0108377_25	Structural annotation	PF04545	NA	NA
UHGV-0108377_27	PHROG	phrog_16126	NA	unknown function
UHGV-0108377_28	PHROG	phrog_6568	NA	unknown function
UHGV-0108377_28	eggNOG-mapper	428125.CLOLEP_01394	NA	NA
UHGV-0108377_32	UniRef90	UniRef90_A0A373CYX4	NA	NA
UHGV-0108377_32	eggNOG-mapper	1256908.HMPREF0373_00667	NA	NA
UHGV-0108377_32	Pfam	PF04448	NA	DUF551
UHGV-0108377_34	PHROG	phrog_3886	NA	unknown function
UHGV-0108377_34	eggNOG-mapper	1298920.KI911353_gene2686	NA	NA
UHGV-0108377_35	KOfam	K03744	lemA; LemA protein	NA
UHGV-0108377_35	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-0108377_35	UniRef90	UniRef90_A0A417ACB5	LemA family protein	NA
UHGV-0108377_35	eggNOG-mapper	1298920.KI911353_gene2688	LemA family	NA
UHGV-0108377_35	Pfam	PF04011	LemA family	LemA
UHGV-0108377_35	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-0108377_35	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-0108377_36	Structural annotation	PF04936	NA	NA
UHGV-0108377_37	PHROG	phrog_15077	NA	unknown function
UHGV-0108377_37	UniRef90	UniRef90_A0A1M6RQ18	RNA polymerase, alpha chain C terminal domain	NA
UHGV-0108377_37	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0108377_37	Structural annotation	NF038070	NA	NA
UHGV-0108377_38	PHROG	phrog_1029	NA	unknown function
UHGV-0108377_38	UniRef90	UniRef90_E7GRE5	NA	NA
UHGV-0108377_38	eggNOG-mapper	742740.HMPREF9474_03490	NA	NA
UHGV-0108377_38	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0108377_39	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0108377_39	UniRef90	UniRef90_A0A417AC21	Replication terminator protein	NA
UHGV-0108377_39	eggNOG-mapper	1298920.KI911353_gene2719	NA	NA
UHGV-0108377_40	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0108377_40	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0108377_40	UniRef90	UniRef90_A0A3R6UTT5	Single-stranded DNA-binding protein	NA
UHGV-0108377_40	eggNOG-mapper	610130.Closa_0232	Single-stranded DNA-binding protein	NA
UHGV-0108377_40	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0108377_40	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0108377_40	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0108377_40	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0108377_40	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0108377_41	PHROG	phrog_864	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0108377_41	UniRef90	UniRef90_A0A3R6TL07	DNA primase	NA
UHGV-0108377_41	eggNOG-mapper	478749.BRYFOR_09102	Phage plasmid primase, P4 family	NA
UHGV-0108377_41	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0108377_41	Pfam	PF19263	NA	DUF5906
UHGV-0108377_41	Pfam	PF03288	Poxvirus D5 protein-like	Pox_D5
UHGV-0108377_41	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0108377_41	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0108377_41	Structural annotation	PF02257, PF05272, PF08706, MF_01407, NF011296, COG3378	NA	NA
UHGV-0108377_42	PHROG	phrog_398	NA	unknown function
UHGV-0108377_42	UniRef90	UniRef90_UPI001C01AC37	putative HNHc nuclease	NA
UHGV-0108377_42	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0108377_42	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0108377_42	Structural annotation	PF16784	NA	NA
UHGV-0108377_47	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0108377_47	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0108377_47	UniRef90	UniRef90_A0A7X2NKL4	Helix-turn-helix domain-containing protein	NA
UHGV-0108377_47	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-0108377_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108377_47	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0108377_48	UniRef90	UniRef90_A0A7X2NKK8	XRE family transcriptional regulator	NA
UHGV-0108377_48	eggNOG-mapper	1235798.C817_00736	addiction module antidote protein HigA	NA
UHGV-0108377_48	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0108377_48	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0108377_49	PHROG	phrog_87	metallo-protease	other
UHGV-0108377_49	UniRef90	UniRef90_UPI0011863754	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0108377_49	eggNOG-mapper	1292035.H476_1038	NA	NA
UHGV-0108377_49	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0108377_49	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0108377_50	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0108377_50	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0108377_50	UniRef90	UniRef90_A0A417ACK8	BRCT domain-containing protein	NA
UHGV-0108377_50	eggNOG-mapper	537013.CLOSTMETH_02498	EXOIII	NA
UHGV-0108377_50	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0108377_50	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0108377_50	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0108377_50	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0108377_50	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0108377_50	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847	NA	NA
UHGV-0108377_51	PHROG	phrog_16228	NA	unknown function
UHGV-0108377_51	UniRef90	UniRef90_A0A3R6QCR3	Uma2 family endonuclease	NA
UHGV-0108377_51	eggNOG-mapper	478749.BRYFOR_07230	Putative restriction endonuclease	NA
UHGV-0108377_51	Pfam	PF05685	Putative restriction endonuclease	Uma2
UHGV-0108377_51	COG	COG4636	Endonuclease, Uma2 family (restriction endonuclease fold)	NA
UHGV-0108377_51	Structural annotation	PF05685, COG4636	NA	NA
UHGV-0108377_52	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0108377_52	PHROG	phrog_95	integrase	integration and excision
UHGV-0108377_52	UniRef90	UniRef90_A0A417ACB4	Recombinase family protein	NA
UHGV-0108377_52	eggNOG-mapper	610130.Closa_2885	Resolvase, N terminal domain	NA
UHGV-0108377_52	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0108377_52	Pfam	PF07508	Recombinase	Recombinase
UHGV-0108377_52	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0108377_52	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0108377_52	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA