UHGV-0108380

Genome information

vOTU vOTU-041954

Genome length 26,372 bps

CDS count 35

Completeness 67.73% (medium-quality)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108380
vOTU ID	vOTU-041954
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_249587
BioSample	SAMEA3708762
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	67.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Uncertain - viral or bacterial
viralVerify score	-4.25
Jumbo phage	No

Genome content
Genome length	26,372 bps
GC content	43.28%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	35
CDS density	93.90%
Average CDS length	708.69 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108380_1	KOfam	K03086	rpoD; RNA polymerase primary sigma factor	NA
UHGV-0108380_1	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0108380_1	UniRef90	UniRef90_UPI0015FA2A89	RNA polymerase sigma factor RpoD	NA
UHGV-0108380_1	eggNOG-mapper	411469.EUBHAL_01215	Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth	NA
UHGV-0108380_1	PADLOC	MzaA_00001	NA	mzaABCDE
UHGV-0108380_1	Pfam	PF04539	Sigma-70 region 3	Sigma70_r3
UHGV-0108380_1	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0108380_1	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0108380_1	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-0108380_2	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0108380_3	eggNOG-mapper	476272.RUMHYD_01772	NA	NA
UHGV-0108380_3	Structural annotation	PF12510	NA	NA
UHGV-0108380_4	PHROG	phrog_20016	NA	unknown function
UHGV-0108380_4	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0108380_4	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0108380_4	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0108380_5	PHROG	phrog_16490	NA	unknown function
UHGV-0108380_5	eggNOG-mapper	476272.RUMHYD_01770	NA	NA
UHGV-0108380_6	PHROG	phrog_21718	NA	unknown function
UHGV-0108380_6	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0108380_6	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0108380_7	PHROG	phrog_3754	NA	unknown function
UHGV-0108380_7	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0108380_8	UniRef90	UniRef90_A0A285PXT6	Winged helix-turn-helix DNA-binding domain	NA
UHGV-0108380_9	PHROG	phrog_199	holin	lysis
UHGV-0108380_9	UniRef90	UniRef90_A0A285PUE3	Bacteriophage holin family	NA
UHGV-0108380_9	eggNOG-mapper	394503.Ccel_2943	toxin secretion phage lysis holin	NA
UHGV-0108380_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0108380_9	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0108380_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0108380_10	COG	COG3204	NA	NA
UHGV-0108380_11	PHROG	phrog_3558	tail protein	tail
UHGV-0108380_11	UniRef90	UniRef90_A8SKQ2	Phage minor structural protein, N-terminal domain protein	NA
UHGV-0108380_11	eggNOG-mapper	411465.PEPMIC_00746	Prophage endopeptidase tail	NA
UHGV-0108380_11	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0108380_11	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0108380_11	COG	COG4926	Phage-related protein	NA
UHGV-0108380_11	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0108380_12	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0108380_12	UniRef90	UniRef90_A0A351TQW0	MtfA protein	NA
UHGV-0108380_12	eggNOG-mapper	411490.ANACAC_00709	phage tail	NA
UHGV-0108380_12	COG	COG4722	Phage-related protein YomH	NA
UHGV-0108380_12	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0108380_13	PHROG	phrog_1686	tail length tape measure protein	tail
UHGV-0108380_13	eggNOG-mapper	1232446.BAIE02000011_gene1586	phage tail tape measure protein	NA
UHGV-0108380_13	COG	COG5412	Phage-related protein	NA
UHGV-0108380_14	PHROG	phrog_688	transposase	integration and excision
UHGV-0108380_14	UniRef90	UniRef90_A0A374NMH3	IS66 family transposase	NA
UHGV-0108380_14	eggNOG-mapper	1469948.JPNB01000001_gene1410	Transposase IS66 family	NA
UHGV-0108380_14	Pfam	PF13007	Transposase C of IS166 homeodomain	LZ_Tnp_IS66
UHGV-0108380_14	Pfam	PF03050	Transposase IS66 family	DDE_Tnp_IS66
UHGV-0108380_14	Pfam	PF13817	IS66 C-terminal element	DDE_Tnp_IS66_C
UHGV-0108380_14	NCBIFam	NF033517.1	IS66 family transposase	NA
UHGV-0108380_14	COG	COG3316	Transposase (or an inactivated derivative), DDE domain	NA
UHGV-0108380_14	Structural annotation	PF03050, NF033517, COG3464	NA	NA
UHGV-0108380_15	KOfam	K07484	K07484; transposase	NA
UHGV-0108380_15	PHROG	phrog_623	transposase	integration and excision
UHGV-0108380_15	UniRef90	UniRef90_A0A6N7YGG1	IS66 family insertion sequence element accessory protein TnpB	NA
UHGV-0108380_15	eggNOG-mapper	397287.C807_03578	IS66 Orf2 like protein	NA
UHGV-0108380_15	Pfam	PF05717	IS66 Orf2 like protein	TnpB_IS66
UHGV-0108380_15	NCBIFam	NF033819.0	IS66 family insertion sequence element accessory protein TnpB	NA
UHGV-0108380_15	COG	COG3436	Transposase	NA
UHGV-0108380_15	Structural annotation	PF05717, NF033819	NA	NA
UHGV-0108380_16	UniRef90	UniRef90_A0A6N7YJ84	IS66 family insertion sequence element accessory protein TnpB	NA
UHGV-0108380_16	eggNOG-mapper	411468.CLOSCI_00172	NA	NA
UHGV-0108380_17	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0108380_17	eggNOG-mapper	641112.ACOK01000073_gene2904	Phage tail tape measure protein, TP901 family	NA
UHGV-0108380_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0108380_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0108380_17	COG	COG5283	Phage-related tail protein	NA
UHGV-0108380_19	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0108380_20	PHROG	phrog_885	major tail protein	tail
UHGV-0108380_20	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0108380_20	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0108380_20	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0108380_21	Structural annotation	PF11367	NA	NA
UHGV-0108380_22	PHROG	phrog_17977	NA	unknown function
UHGV-0108380_22	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0108380_22	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0108380_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0108380_22	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0108380_24	PHROG	phrog_544	major head protein	head and packaging
UHGV-0108380_24	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0108380_24	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0108380_24	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0108380_25	Structural annotation	PF06810	NA	NA
UHGV-0108380_26	KOfam	K07273	acm; lysozyme	NA
UHGV-0108380_26	PHROG	phrog_291	endolysin	lysis
UHGV-0108380_26	UniRef90	UniRef90_A0A285PUE0	Lysozyme	NA
UHGV-0108380_26	eggNOG-mapper	1235800.C819_00458	Glycosyl hydrolases family 25	NA
UHGV-0108380_26	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0108380_26	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0108380_26	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0108380_26	Structural annotation	PF01183, PF01471, MF_02227, NF007360, COG3757, COG3409	NA	NA
UHGV-0108380_27	PHROG	phrog_1048	NA	unknown function
UHGV-0108380_27	UniRef90	UniRef90_UPI0018AA3785	NA	NA
UHGV-0108380_27	eggNOG-mapper	457412.RSAG_01107	NA	NA
UHGV-0108380_27	Pfam	PF11195	NA	DUF2829
UHGV-0108380_27	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0108380_27	Structural annotation	PF11195	NA	NA
UHGV-0108380_28	eggNOG-mapper	411469.EUBHAL_00974	CHAP domain	NA
UHGV-0108380_28	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0108380_28	Structural annotation	PF05382	NA	NA
UHGV-0108380_29	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0108380_29	UniRef90	UniRef90_A0A285PXV7	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0108380_29	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0108380_29	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0108380_29	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0108380_29	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0108380_30	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0108380_30	UniRef90	UniRef90_A0A285PUG1	Phage head morphogenesis domain	NA
UHGV-0108380_30	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0108380_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0108380_30	COG	COG2369	NA	NA
UHGV-0108380_30	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0108380_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-0108380_31	UniRef90	UniRef90_A0A285PU84	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0108380_31	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0108380_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0108380_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0108380_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0108380_32	PHROG	phrog_10250	NA	unknown function
UHGV-0108380_32	UniRef90	UniRef90_A0A285PT65	Phage_term_2: phage terminase, large subunit, PBSX family	NA
UHGV-0108380_32	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0108380_32	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0108380_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0108380_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0108380_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-0108380_32	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0108380_33	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0108380_33	UniRef90	UniRef90_A0A285PT83	Homeobox domain-like	NA
UHGV-0108380_33	eggNOG-mapper	1035196.HMPREF9998_01273	HNH endonuclease	NA
UHGV-0108380_33	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0108380_33	Structural annotation	PF07141	NA	NA
UHGV-0108380_34	UniRef90	UniRef90_A0A285PYI3	Homeodomain-like domain	NA
UHGV-0108380_34	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0108380_34	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0108380_35	UniRef90	UniRef90_R6D4X3	NA	NA
UHGV-0108380_35	eggNOG-mapper	1410609.JHVB01000006_gene729	NA	NA
UHGV-0108380_35	Pfam	PF07866	NA	DUF1653
UHGV-0108380_35	COG	COG4728	NA	NA