UHGV-0108386

Genome information

Genome length 35,549 bps

CDS count 65

Completeness 94.36% (high-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108386
vOTU ID	vOTU-069039
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_238364
BioSample	SAMEA3708667
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	94.36% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	19
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	35.77
Jumbo phage	No

Genome content
Genome length	35,549 bps
GC content	42.36%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	89.25%
Average CDS length	493.52 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108386_1	KOfam	K14059	int; integrase	NA
UHGV-0108386_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0108386_1	UniRef90	UniRef90_A0A3E3JY51	Site-specific integrase	NA
UHGV-0108386_1	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0108386_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0108386_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0108386_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0108386_2	PHROG	phrog_2158	abortive infection resistance protein	moron, auxiliary metabolic gene and host takeover
UHGV-0108386_2	UniRef90	UniRef90_UPI00189B9E82	Abi family protein	NA
UHGV-0108386_2	eggNOG-mapper	397288.C806_00111	Abi-like protein	NA
UHGV-0108386_2	PADLOC	AbiD	AbiD	Abi
UHGV-0108386_2	Pfam	PF07751	Abi-like protein	Abi_2
UHGV-0108386_2	COG	COG4823	Abortive infection bacteriophage resistance protein	NA
UHGV-0108386_2	Structural annotation	PF07751, COG4823	NA	NA
UHGV-0108386_3	PHROG	phrog_9418	NA	unknown function
UHGV-0108386_3	eggNOG-mapper	411462.DORLON_00822	NA	NA
UHGV-0108386_3	Structural annotation	PF10233	NA	NA
UHGV-0108386_4	PHROG	phrog_87	metallo-protease	other
UHGV-0108386_4	UniRef90	UniRef90_A0A3E3JY97	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0108386_4	eggNOG-mapper	658655.HMPREF0988_02595	Zn peptidase	NA
UHGV-0108386_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0108386_4	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0108386_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0108386_5	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0108386_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0108386_5	UniRef90	UniRef90_A0A3E3JYF3	XRE family transcriptional regulator	NA
UHGV-0108386_5	eggNOG-mapper	1235790.C805_00592	Helix-turn-helix XRE-family like proteins	NA
UHGV-0108386_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108386_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0108386_5	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0108386_6	UniRef90	UniRef90_A0A3E3JY76	XRE family transcriptional regulator	NA
UHGV-0108386_6	eggNOG-mapper	861454.HMPREF9099_00333	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0108386_6	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0108386_6	Structural annotation	PF13560, NF041951, COG1396	NA	NA
UHGV-0108386_7	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0108386_7	UniRef90	UniRef90_A0A3E3JYK8	NA	NA
UHGV-0108386_7	eggNOG-mapper	226185.EF_2851	NA	NA
UHGV-0108386_7	Pfam	PF11195	NA	DUF2829
UHGV-0108386_7	Structural annotation	PF11195	NA	NA
UHGV-0108386_8	UniRef90	UniRef90_A0A3E3JYG3	Lactate permease	NA
UHGV-0108386_8	eggNOG-mapper	1118063.I7J6R8_9CAUD	NA	NA
UHGV-0108386_8	Structural annotation	PF08679, MF_01177, NF038268, COG1846	NA	NA
UHGV-0108386_11	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-0108386_11	UniRef90	UniRef90_A0A414UVZ4	Aspartate ammonia-lyase	NA
UHGV-0108386_11	eggNOG-mapper	562743.JH976434_gene1050	NA	NA
UHGV-0108386_11	Structural annotation	PF11195	NA	NA
UHGV-0108386_14	PHROG	phrog_6930	NA	unknown function
UHGV-0108386_15	UniRef90	UniRef90_A0A3E3JY61	XRE family transcriptional regulator	NA
UHGV-0108386_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108386_15	Structural annotation	PF13560, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0108386_16	Structural annotation	PF09392	NA	NA
UHGV-0108386_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0108386_19	eggNOG-mapper	1232452.BAIB02000007_gene1647	NA	NA
UHGV-0108386_19	Structural annotation	PF21578	NA	NA
UHGV-0108386_20	PHROG	phrog_824	NA	unknown function
UHGV-0108386_20	UniRef90	UniRef90_A0A1Y3WFH5	VRR-NUC domain-containing protein	NA
UHGV-0108386_20	eggNOG-mapper	1232452.BAIB02000007_gene1645	VRR_NUC	NA
UHGV-0108386_20	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0108386_21	PHROG	phrog_15077	NA	unknown function
UHGV-0108386_21	eggNOG-mapper	1232452.BAIB02000007_gene1643	NA	NA
UHGV-0108386_21	Structural annotation	PF02195, PF07506, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0108386_22	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0108386_23	PHROG	phrog_29911	NA	unknown function
UHGV-0108386_23	eggNOG-mapper	97139.C824_00748	NA	NA
UHGV-0108386_24	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0108386_24	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0108386_24	UniRef90	UniRef90_A0A3E3JY83	Methyltransferase	NA
UHGV-0108386_24	eggNOG-mapper	665950.HMPREF1025_02545	DNA methylase	NA
UHGV-0108386_24	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0108386_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0108386_24	COG	COG0863	DNA modification methylase	NA
UHGV-0108386_24	Structural annotation	PF01555, NF010253, COG0863	NA	NA
UHGV-0108386_25	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0108386_25	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0108386_25	UniRef90	UniRef90_A0A3E3JXU8	Adenylyl-sulfate reductase (Fragment)	NA
UHGV-0108386_25	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0108386_25	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0108386_25	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0108386_25	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0108386_25	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0108386_30	PHROG	phrog_15198	NA	unknown function
UHGV-0108386_30	UniRef90	UniRef90_A0A1Y3WFI5	NA	NA
UHGV-0108386_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0108386_32	UniRef90	UniRef90_A0A3R5X3C8	NA	NA
UHGV-0108386_32	eggNOG-mapper	411461.DORFOR_00754	sigma factor activity	NA
UHGV-0108386_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0108386_32	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0108386_33	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0108386_33	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0108386_33	UniRef90	UniRef90_A0A3E3JXV9	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0108386_33	eggNOG-mapper	397287.C807_02050	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0108386_33	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0108386_33	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0108386_33	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0108386_34	KOfam	K18843	hicB; antitoxin HicB	NA
UHGV-0108386_34	PHROG	phrog_497	toxin-antitoxin system HicB-like	moron, auxiliary metabolic gene and host takeover
UHGV-0108386_34	UniRef90	UniRef90_A0A3E3JXV7	HicB family protein	NA
UHGV-0108386_34	eggNOG-mapper	397287.C807_02051	HicB_like antitoxin of bacterial toxin-antitoxin system	NA
UHGV-0108386_34	Pfam	PF15919	HicB_like antitoxin of bacterial toxin-antitoxin system	HicB_lk_antitox
UHGV-0108386_34	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0108386_34	Structural annotation	PF15919, COG1598	NA	NA
UHGV-0108386_36	UniRef90	UniRef90_A0A3A6K7U9	Chemotaxis protein	NA
UHGV-0108386_36	eggNOG-mapper	1232452.BAIB02000007_gene1632	NA	NA
UHGV-0108386_36	Structural annotation	NF008671, COG4710	NA	NA
UHGV-0108386_37	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0108386_37	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0108386_37	UniRef90	UniRef90_A0A3E3JY08	HNH endonuclease	NA
UHGV-0108386_37	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0108386_37	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0108386_37	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0108386_39	Pfam	PF13671	AAA domain	AAA_33
UHGV-0108386_39	Structural annotation	PF18748, MF_03172, NF038208, COG4639	NA	NA
UHGV-0108386_40	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0108386_40	UniRef90	UniRef90_A0A1C5LZF0	Phage terminase, small subunit	NA
UHGV-0108386_40	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0108386_40	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0108386_41	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0108386_41	UniRef90	UniRef90_A0A3E3JY25	Terminase large subunit	NA
UHGV-0108386_41	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0108386_41	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0108386_41	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0108386_41	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0108386_41	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0108386_42	PHROG	phrog_12	portal protein	head and packaging
UHGV-0108386_42	UniRef90	UniRef90_A0A3E3JY21	Phage portal protein	NA
UHGV-0108386_42	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0108386_42	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0108386_42	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0108386_42	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0108386_43	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0108386_43	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0108386_43	UniRef90	UniRef90_A0A3E3JYT5	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0108386_43	eggNOG-mapper	1232452.BAIB02000007_gene1626	Belongs to the peptidase S14 family	NA
UHGV-0108386_43	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0108386_43	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0108386_43	Structural annotation	PF00574, MF_00444, TIGR00493, COG0740	NA	NA
UHGV-0108386_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-0108386_44	UniRef90	UniRef90_A0A3E3JY53	Phage major capsid protein	NA
UHGV-0108386_44	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0108386_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0108386_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0108386_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0108386_44	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0108386_45	PHROG	phrog_31690	NA	unknown function
UHGV-0108386_45	eggNOG-mapper	1232452.BAIB02000007_gene1624	NA	NA
UHGV-0108386_47	UniRef90	UniRef90_A0A844KCF4	Phage head closure protein	NA
UHGV-0108386_47	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0108386_48	PHROG	phrog_78	tail terminator	connector
UHGV-0108386_48	Structural annotation	PF05657	NA	NA
UHGV-0108386_49	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0108386_49	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0108386_50	PHROG	phrog_88	major tail protein	tail
UHGV-0108386_50	UniRef90	UniRef90_A0A3E3JYD8	Phage tail protein	NA
UHGV-0108386_50	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0108386_50	COG	COG5492	NA	NA
UHGV-0108386_50	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0108386_53	PHROG	phrog_23464	NA	unknown function
UHGV-0108386_53	UniRef90	UniRef90_A0A7G5N113	Phage tail tape measure protein	NA
UHGV-0108386_53	eggNOG-mapper	1232452.BAIB02000007_gene1616	phage tail tape measure protein	NA
UHGV-0108386_53	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0108386_54	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0108386_54	UniRef90	UniRef90_A0A844KEE5	Phage tail protein	NA
UHGV-0108386_54	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0108386_54	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0108386_54	COG	COG4722	Phage-related protein YomH	NA
UHGV-0108386_54	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0108386_55	PHROG	phrog_13289	tail protein	tail
UHGV-0108386_55	UniRef90	UniRef90_A0A3E3JY67	Prophage_tail domain-containing protein	NA
UHGV-0108386_55	eggNOG-mapper	1232452.BAIB02000007_gene1614	Prophage endopeptidase tail	NA
UHGV-0108386_55	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0108386_55	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0108386_55	COG	COG4926	Phage-related protein	NA
UHGV-0108386_55	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0108386_56	PHROG	phrog_14030	NA	unknown function
UHGV-0108386_56	UniRef90	UniRef90_A0A3E3JYD3	Peptidase M23	NA
UHGV-0108386_56	eggNOG-mapper	1232452.BAIB02000007_gene1613	NlpC/P60 family	NA
UHGV-0108386_56	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0108386_56	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0108386_56	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0108386_56	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0108386_57	PHROG	phrog_819	tail protein	tail
UHGV-0108386_57	UniRef90	UniRef90_UPI000D7A7A43	collagen-like protein	NA
UHGV-0108386_57	eggNOG-mapper	290402.Cbei_3387	NA	NA
UHGV-0108386_57	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0108386_58	PHROG	phrog_19695	NA	unknown function
UHGV-0108386_58	eggNOG-mapper	1232452.BAIB02000007_gene1611	NA	NA
UHGV-0108386_58	Structural annotation	PF19714	NA	NA
UHGV-0108386_59	UniRef90	UniRef90_UPI001A9BB450	collagen-like protein	NA
UHGV-0108386_59	eggNOG-mapper	1232452.BAIB02000007_gene1610	NA	NA
UHGV-0108386_60	KOfam	K24213	C1QTNF9; complement C1q and tumor necrosis factor-related protein 9	NA
UHGV-0108386_60	PHROG	phrog_10972	tail fiber protein	tail
UHGV-0108386_60	UniRef90	UniRef90_UPI00191DA4CA	collagen-like protein	NA
UHGV-0108386_60	eggNOG-mapper	1232452.BAIB02000007_gene1609	Collagen triple helix repeat (20 copies)	NA
UHGV-0108386_60	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0108386_60	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0108386_61	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0108386_61	PHROG	phrog_819	tail protein	tail
UHGV-0108386_61	UniRef90	UniRef90_UPI0006B14F6F	collagen-like protein	NA
UHGV-0108386_61	eggNOG-mapper	1232452.BAIB02000007_gene1608	Collagen triple helix repeat	NA
UHGV-0108386_61	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0108386_61	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0108386_63	eggNOG-mapper	1232452.BAIB02000007_gene1607	NA	NA
UHGV-0108386_64	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0108386_64	Structural annotation	NF040910	NA	NA
UHGV-0108386_65	PHROG	phrog_1863	NA	unknown function
UHGV-0108386_65	eggNOG-mapper	1232452.BAIB02000007_gene1606	NA	NA