UHGV-0108517

Genome information

Genome length 41,597 bps

CDS count 75

Completeness 100.00% (complete)

geNomad score 0.9807

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108517
vOTU ID	vOTU-045585
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_243912
BioSample	SAMEA3708898
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9807
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	54.5
Jumbo phage	No

Genome content
Genome length	41,597 bps
GC content	50.11%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	90.48%
Average CDS length	508.24 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108517_1	PHROG	phrog_7964	NA	unknown function
UHGV-0108517_1	eggNOG-mapper	478749.BRYFOR_05427	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0108517_1	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0108517_1	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0108517_1	Structural annotation	MF_01691, NF040481, COG2171	NA	NA
UHGV-0108517_2	Structural annotation	PF17259	NA	NA
UHGV-0108517_3	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0108517_3	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0108517_5	UniRef90	UniRef90_A0A367GIH6	HTH cro/C1-type domain-containing protein	NA
UHGV-0108517_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0108517_5	Structural annotation	PF05339, MF_00535, NF041951, COG3655	NA	NA
UHGV-0108517_7	PHROG	phrog_7168	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0108517_7	UniRef90	UniRef90_A0A2D0HDJ9	GIY-YIG domain-containing protein (Fragment)	NA
UHGV-0108517_7	eggNOG-mapper	1042163.BRLA_c031240	GIY-YIG catalytic domain	NA
UHGV-0108517_7	PADLOC	HEase_00030	homing endonuclease	RM
UHGV-0108517_7	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0108517_7	Structural annotation	PF19835, TIGR01453	NA	NA
UHGV-0108517_9	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0108517_9	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0108517_9	eggNOG-mapper	665950.HMPREF1025_02561	sequence-specific DNA binding	NA
UHGV-0108517_9	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108517_9	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0108517_9	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0108517_10	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0108517_13	PHROG	phrog_10934	NA	unknown function
UHGV-0108517_13	UniRef90	UniRef90_A0A242LDX9	TM2 domain-containing protein	NA
UHGV-0108517_13	eggNOG-mapper	883066.HMPREF9233_01038	NA	NA
UHGV-0108517_14	KOfam	K14059	int; integrase	NA
UHGV-0108517_14	PHROG	phrog_1	integrase	integration and excision
UHGV-0108517_14	UniRef90	UniRef90_UPI001C3A4BBE	Site-specific integrase	NA
UHGV-0108517_14	eggNOG-mapper	748224.HMPREF9436_03382	Belongs to the 'phage' integrase family	NA
UHGV-0108517_14	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0108517_14	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0108517_14	Structural annotation	PF00589, PF14659, MF_01808, NF007246, COG4973	NA	NA
UHGV-0108517_16	eggNOG-mapper	1226322.HMPREF1545_00079	NA	NA
UHGV-0108517_17	Structural annotation	PF12510	NA	NA
UHGV-0108517_18	PHROG	phrog_20016	NA	unknown function
UHGV-0108517_18	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0108517_18	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0108517_18	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0108517_19	PHROG	phrog_16490	NA	unknown function
UHGV-0108517_19	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0108517_20	PHROG	phrog_22984	NA	unknown function
UHGV-0108517_21	PHROG	phrog_21718	NA	unknown function
UHGV-0108517_21	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0108517_22	PHROG	phrog_3754	NA	unknown function
UHGV-0108517_22	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0108517_23	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0108517_23	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0108517_23	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0108517_24	PHROG	phrog_13256	NA	unknown function
UHGV-0108517_24	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0108517_25	UniRef90	UniRef90_UPI00102F4BEE	CTP synthase	NA
UHGV-0108517_25	eggNOG-mapper	1042156.CXIVA_01580	NA	NA
UHGV-0108517_26	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-0108517_26	PHROG	phrog_7698	endolysin	lysis
UHGV-0108517_26	UniRef90	UniRef90_E5DTQ2	Putative muramidase	NA
UHGV-0108517_26	eggNOG-mapper	877414.ATWA01000019_gene2055	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-0108517_26	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0108517_26	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-0108517_26	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0108517_26	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG3023, COG4991	NA	NA
UHGV-0108517_29	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-0108517_29	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0108517_29	Structural annotation	PF10651, NF032891	NA	NA
UHGV-0108517_30	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0108517_30	Structural annotation	NF040910	NA	NA
UHGV-0108517_33	PHROG	phrog_9534	head protein	head and packaging
UHGV-0108517_33	eggNOG-mapper	431943.CKL_4054	COG NOG18825 non supervised orthologous group	NA
UHGV-0108517_34	PHROG	phrog_538	minor tail protein	tail
UHGV-0108517_34	UniRef90	UniRef90_UPI001D09A08A	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0108517_34	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-0108517_34	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0108517_34	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0108517_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0108517_35	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0108517_35	eggNOG-mapper	1033737.CAEV01000029_gene285	Phage tail protein	NA
UHGV-0108517_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-0108517_35	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0108517_36	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0108517_36	UniRef90	UniRef90_A0A0D0SGC8	Phage minor tail protein	NA
UHGV-0108517_36	eggNOG-mapper	1437608.BBIA_2554	phage tail tape measure protein	NA
UHGV-0108517_36	COG	COG5412	Phage-related protein	NA
UHGV-0108517_36	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0108517_37	PHROG	phrog_20920	NA	unknown function
UHGV-0108517_37	eggNOG-mapper	1121335.Clst_0399	NA	NA
UHGV-0108517_37	Structural annotation	PF16674	NA	NA
UHGV-0108517_39	PHROG	phrog_18646	NA	unknown function
UHGV-0108517_40	PHROG	phrog_885	major tail protein	tail
UHGV-0108517_40	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0108517_40	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0108517_40	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0108517_41	Structural annotation	PF11367	NA	NA
UHGV-0108517_42	PHROG	phrog_17977	NA	unknown function
UHGV-0108517_42	UniRef90	UniRef90_A0A285PT57	Phage head-tail joining protein	NA
UHGV-0108517_42	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0108517_45	PHROG	phrog_544	major head protein	head and packaging
UHGV-0108517_45	UniRef90	UniRef90_UPI0019576143	N4-gp56 family major capsid protein	NA
UHGV-0108517_45	eggNOG-mapper	411471.SUBVAR_06940	NA	NA
UHGV-0108517_45	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0108517_45	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0108517_46	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0108517_46	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0108517_46	Structural annotation	PF06810	NA	NA
UHGV-0108517_47	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0108517_47	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0108517_47	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0108517_48	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0108517_48	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0108517_48	eggNOG-mapper	1443125.Z962_05620	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0108517_48	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0108517_48	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0108517_48	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0108517_49	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0108517_49	UniRef90	UniRef90_A0A7X5E1T7	Phage_Mu_F domain-containing protein	NA
UHGV-0108517_49	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0108517_49	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0108517_49	COG	COG2369	NA	NA
UHGV-0108517_49	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0108517_50	PHROG	phrog_64	portal protein	head and packaging
UHGV-0108517_50	UniRef90	UniRef90_UPI0018A8A301	phage portal protein	NA
UHGV-0108517_50	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0108517_50	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0108517_50	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0108517_51	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0108517_51	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0108517_51	UniRef90	UniRef90_UPI001C3B9235	PBSX family phage terminase large subunit	NA
UHGV-0108517_51	eggNOG-mapper	411471.SUBVAR_06507	Phage terminase, large subunit, PBSX family	NA
UHGV-0108517_51	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0108517_51	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0108517_51	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0108517_51	COG	COG1783	Phage terminase large subunit	NA
UHGV-0108517_51	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0108517_52	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0108517_52	UniRef90	UniRef90_UPI00195648BB	DNA-packaging protein	NA
UHGV-0108517_52	eggNOG-mapper	397290.C810_05185	DNA-packaging protein gp3	NA
UHGV-0108517_52	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0108517_52	Structural annotation	PF16677	NA	NA
UHGV-0108517_53	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0108517_53	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0108517_53	Pfam	PF07374	NA	DUF1492
UHGV-0108517_53	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0108517_53	Structural annotation	PF04545, PF18323, MF_00674, NF009172, COG1191	NA	NA
UHGV-0108517_54	UniRef90	UniRef90_UPI001C00E342	NA	NA
UHGV-0108517_54	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0108517_56	PHROG	phrog_9958	NA	unknown function
UHGV-0108517_56	UniRef90	UniRef90_UPI001D08A241	NA	NA
UHGV-0108517_56	eggNOG-mapper	246199.CUS_4486	NA	NA
UHGV-0108517_56	Structural annotation	PF19789	NA	NA
UHGV-0108517_58	Structural annotation	TIGR03826	NA	NA
UHGV-0108517_61	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0108517_61	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0108517_61	UniRef90	UniRef90_UPI0018ABA1B6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0108517_61	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0108517_61	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0108517_61	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0108517_61	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0108517_64	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0108517_64	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0108517_64	UniRef90	UniRef90_UPI000C7E331E	replicative DNA helicase	NA
UHGV-0108517_64	eggNOG-mapper	665956.HMPREF1032_01442	Participates in initiation and elongation during chromosome replication	NA
UHGV-0108517_64	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0108517_64	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0108517_64	COG	COG0305	Replicative DNA helicase	NA
UHGV-0108517_64	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0108517_65	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0108517_65	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0108517_65	Structural annotation	PF07106, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0108517_66	PHROG	phrog_4973	NA	unknown function
UHGV-0108517_66	UniRef90	UniRef90_A0A3D3Y5F2	DNA-binding protein	NA
UHGV-0108517_66	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0108517_66	Structural annotation	PF14090, MF_01586, TIGR00373, COG5625	NA	NA
UHGV-0108517_67	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0108517_67	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0108517_67	UniRef90	UniRef90_A0A1Q6T150	Single-stranded DNA-binding protein	NA
UHGV-0108517_67	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-0108517_67	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0108517_67	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0108517_67	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0108517_67	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0108517_67	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0108517_68	PHROG	phrog_9804	NA	unknown function
UHGV-0108517_68	Pfam	PF11417	Loader and inhibitor of phage G40P	Inhibitor_G39P
UHGV-0108517_69	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0108517_69	Pfam	PF19808	NA	DUF6291
UHGV-0108517_69	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0108517_69	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0108517_69	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0108517_69	Structural annotation	PF07261, TIGR01446, COG3935	NA	NA
UHGV-0108517_70	PHROG	phrog_7566	NA	unknown function
UHGV-0108517_70	eggNOG-mapper	693746.OBV_24070	NA	NA
UHGV-0108517_71	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0108517_71	UniRef90	UniRef90_UPI000C7BF263	recombination protein NinB	NA
UHGV-0108517_71	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0108517_71	Structural annotation	PF05772	NA	NA
UHGV-0108517_72	eggNOG-mapper	1041142.ATTP01000043_gene5324	NA	NA
UHGV-0108517_75	PHROG	phrog_20532	NA	unknown function
UHGV-0108517_75	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0108517_75	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA