UHGV-0108540

Genome information

Genome length 33,384 bps

CDS count 46

Completeness 99.90% (high-quality)

geNomad score 0.9703

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108540
vOTU ID	vOTU-062570
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_249117
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	3
Recoded stop codon	No

Viral signal
geNomad score	0.9703
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	2
viralVerify prediction	Virus
viralVerify score	22.67
Jumbo phage	No

Genome content
Genome length	33,384 bps
GC content	51.83%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	46
CDS density	91.49%
Average CDS length	667.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108540_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0108540_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0108540_1	UniRef90	UniRef90_K1U593	TnpX site-specific recombinase (Fragment)	NA
UHGV-0108540_1	eggNOG-mapper	511680.BUTYVIB_01736	NA	NA
UHGV-0108540_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0108540_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0108540_2	eggNOG-mapper	658086.HMPREF0994_00014	NA	NA
UHGV-0108540_2	AcrCatalog	cluster_1465	NA	NA
UHGV-0108540_3	PHROG	phrog_1313	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0108540_3	UniRef90	UniRef90_D4S145	Virulence-associated protein E	NA
UHGV-0108540_3	eggNOG-mapper	511680.BUTYVIB_01815	Virulence-associated protein E	NA
UHGV-0108540_3	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-0108540_3	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-0108540_3	Structural annotation	PF05272, MF_04000, NF005477, COG5545	NA	NA
UHGV-0108540_4	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0108540_4	PHROG	phrog_11992	NA	unknown function
UHGV-0108540_4	UniRef90	UniRef90_A0A2A7AKP5	DNA primase	NA
UHGV-0108540_4	eggNOG-mapper	411483.FAEPRAA2165_02091	CHC2 zinc finger domain protein	NA
UHGV-0108540_4	PADLOC	drt-UG29	DRT	DRT
UHGV-0108540_4	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0108540_4	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0108540_4	Structural annotation	PF01807	NA	NA
UHGV-0108540_5	PHROG	phrog_26285	NA	unknown function
UHGV-0108540_5	UniRef90	UniRef90_F7K2D2	MobA_MobL domain-containing protein	NA
UHGV-0108540_5	eggNOG-mapper	658086.HMPREF0994_00011	MobA/MobL family	NA
UHGV-0108540_5	PADLOC	DpdH_00003	DpdH	DPD
UHGV-0108540_5	Pfam	PF03389	MobA/MobL family	MobA_MobL
UHGV-0108540_5	NCBIFam	NF041496.1	MobQ family relaxase	NA
UHGV-0108540_5	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0108540_5	Structural annotation	PF03389, NF041496	NA	NA
UHGV-0108540_6	KOfam	K03829	yedL; putative acetyltransferase [EC:2.3.1.-]	NA
UHGV-0108540_6	PHROG	phrog_3810	acetyltransferase	other
UHGV-0108540_6	UniRef90	UniRef90_A0A3E2SXX5	GNAT family N-acetyltransferase	NA
UHGV-0108540_6	eggNOG-mapper	1163671.JAGI01000003_gene599	PFAM Acetyltransferase (GNAT) family	NA
UHGV-0108540_6	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-0108540_6	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-0108540_7	UniRef90	UniRef90_A0A2A6ZB05	Glutamyl-tRNA amidotransferase	NA
UHGV-0108540_7	eggNOG-mapper	658086.HMPREF0994_00008	NA	NA
UHGV-0108540_7	Pfam	PF12958	NA	DUF3847
UHGV-0108540_8	UniRef90	UniRef90_C7H700	HTH deoR-type domain-containing protein	NA
UHGV-0108540_8	eggNOG-mapper	411483.FAEPRAA2165_02083	Transcriptional regulator	NA
UHGV-0108540_8	Pfam	PF08220	DeoR-like helix-turn-helix domain	HTH_DeoR
UHGV-0108540_8	COG	COG1846	DNA-binding transcriptional regulator, MarR family	NA
UHGV-0108540_8	Structural annotation	PF06970, MF_01177, TIGR01714, COG3355	NA	NA
UHGV-0108540_9	eggNOG-mapper	658086.HMPREF0994_00006	NA	NA
UHGV-0108540_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0108540_10	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0108540_10	UniRef90	UniRef90_D4S157	DNA-binding helix-turn-helix protein	NA
UHGV-0108540_10	eggNOG-mapper	511680.BUTYVIB_01827	NA	NA
UHGV-0108540_10	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0108540_10	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0108540_10	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0108540_11	UniRef90	UniRef90_UPI000C1B7EE4	GAP family protein	NA
UHGV-0108540_11	eggNOG-mapper	1219626.HMPREF1639_06915	NA	NA
UHGV-0108540_12	KOfam	K07005	NA	NA
UHGV-0108540_12	UniRef90	UniRef90_A0A564URK5	Pyridoxamine 5'-phosphate oxidase	NA
UHGV-0108540_12	eggNOG-mapper	1219626.HMPREF1639_06910	Pyridoxamine 5'-phosphate oxidase	NA
UHGV-0108540_12	Pfam	PF12900	Pyridoxamine 5'-phosphate oxidase	Pyridox_ox_2
UHGV-0108540_12	COG	COG3467	Nitroimidazole reductase NimA or a related FMN-containing flavoprotein, pyridoxamine 5'-phosphate oxidase superfamily	NA
UHGV-0108540_13	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0108540_13	UniRef90	UniRef90_A0A417TLN5	XRE family transcriptional regulator	NA
UHGV-0108540_13	eggNOG-mapper	1219626.HMPREF1639_06905	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0108540_13	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0108540_13	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0108540_13	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0108540_14	PHROG	phrog_33952	NA	unknown function
UHGV-0108540_16	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0108540_16	eggNOG-mapper	641107.CDLVIII_1314	NA	NA
UHGV-0108540_16	Structural annotation	PF21578	NA	NA
UHGV-0108540_17	PHROG	phrog_34937	NA	unknown function
UHGV-0108540_18	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0108540_18	UniRef90	UniRef90_R6ISF1	NA	NA
UHGV-0108540_18	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-0108540_18	Pfam	PF06356	NA	DUF1064
UHGV-0108540_18	Structural annotation	PF06356	NA	NA
UHGV-0108540_20	PHROG	phrog_15198	NA	unknown function
UHGV-0108540_20	UniRef90	UniRef90_A0A3A6ECV8	NA	NA
UHGV-0108540_20	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0108540_20	Pfam	PF04448	NA	DUF551
UHGV-0108540_21	PHROG	phrog_4704	tail length tape measure protein	tail
UHGV-0108540_21	eggNOG-mapper	742723.HMPREF9477_00897	phage tail tape measure protein	NA
UHGV-0108540_21	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0108540_21	COG	COG4487	NA	NA
UHGV-0108540_23	PHROG	phrog_35860	NA	unknown function
UHGV-0108540_23	UniRef90	UniRef90_UPI001B3C69A2	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0108540_23	eggNOG-mapper	457412.RSAG_01173	PcfK-like protein	NA
UHGV-0108540_23	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0108540_23	Structural annotation	PF14058	NA	NA
UHGV-0108540_24	PHROG	phrog_8470	NA	unknown function
UHGV-0108540_24	UniRef90	UniRef90_UPI001C0AE9DA	PcfJ domain-containing protein	NA
UHGV-0108540_24	eggNOG-mapper	1117108.PAALTS15_13637	PcfJ-like protein	NA
UHGV-0108540_24	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0108540_24	Structural annotation	PF14284	NA	NA
UHGV-0108540_25	PHROG	phrog_15609	NA	unknown function
UHGV-0108540_25	UniRef90	UniRef90_A0A3A6JZQ1	NA	NA
UHGV-0108540_25	eggNOG-mapper	1514668.JOOA01000001_gene225	NA	NA
UHGV-0108540_25	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0108540_29	PHROG	phrog_1558	NA	unknown function
UHGV-0108540_29	UniRef90	UniRef90_A0A316RAK3	Sigma70_r4_2 domain-containing protein	NA
UHGV-0108540_29	eggNOG-mapper	411459.RUMOBE_01740	NA	NA
UHGV-0108540_29	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0108540_29	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0108540_30	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0108540_30	UniRef90	UniRef90_A0A844FGQ3	HNH endonuclease	NA
UHGV-0108540_30	eggNOG-mapper	411459.RUMOBE_01739	NA	NA
UHGV-0108540_31	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0108540_31	UniRef90	UniRef90_A0A316RD76	Phage terminase small subunit P27 family	NA
UHGV-0108540_31	eggNOG-mapper	742741.HMPREF9475_00421	Phage terminase, small subunit	NA
UHGV-0108540_31	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0108540_31	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0108540_31	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0108540_32	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0108540_32	UniRef90	UniRef90_A0A316R7M0	Terminase large subunit	NA
UHGV-0108540_32	eggNOG-mapper	411459.RUMOBE_01737	NA	NA
UHGV-0108540_32	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0108540_32	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0108540_32	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0108540_32	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0108540_33	PHROG	phrog_12	portal protein	head and packaging
UHGV-0108540_33	UniRef90	UniRef90_A0A316R7D3	Phage portal protein	NA
UHGV-0108540_33	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-0108540_33	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0108540_33	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0108540_33	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0108540_33	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0108540_34	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0108540_34	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0108540_34	UniRef90	UniRef90_A0A316R8I3	Clp protease	NA
UHGV-0108540_34	eggNOG-mapper	742741.HMPREF9475_00424	Clp protease	NA
UHGV-0108540_34	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0108540_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0108540_34	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0108540_35	PHROG	phrog_10	major head protein	head and packaging
UHGV-0108540_35	UniRef90	UniRef90_A0A316RM35	Phage major capsid protein	NA
UHGV-0108540_35	eggNOG-mapper	411459.RUMOBE_01733	phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0108540_35	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0108540_35	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0108540_35	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0108540_35	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0108540_36	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0108540_36	UniRef90	UniRef90_A0A316R9F5	Phage gp6-like head-tail connector protein	NA
UHGV-0108540_36	eggNOG-mapper	411459.RUMOBE_01732	NA	NA
UHGV-0108540_36	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0108540_36	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0108540_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0108540_37	UniRef90	UniRef90_A0A316R8D9	Phage head-tail adapter protein	NA
UHGV-0108540_37	eggNOG-mapper	411459.RUMOBE_01731	Phage head-tail adaptor	NA
UHGV-0108540_37	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0108540_37	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0108540_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0108540_38	UniRef90	UniRef90_A0A174MCG9	Phage protein, HK97 gp10 family	NA
UHGV-0108540_38	eggNOG-mapper	411459.RUMOBE_01730	Phage protein, HK97 gp10 family	NA
UHGV-0108540_38	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0108540_38	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0108540_39	PHROG	phrog_78	tail terminator	connector
UHGV-0108540_39	eggNOG-mapper	411468.CLOSCI_01495	NA	NA
UHGV-0108540_39	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0108540_40	PHROG	phrog_88	major tail protein	tail
UHGV-0108540_40	UniRef90	UniRef90_A0A316RAJ2	Major tail protein	NA
UHGV-0108540_40	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0108540_40	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0108540_40	COG	COG5492	NA	NA
UHGV-0108540_40	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0108540_41	PHROG	phrog_13494	NA	unknown function
UHGV-0108540_41	eggNOG-mapper	742741.HMPREF9475_00431	NA	NA
UHGV-0108540_42	PHROG	phrog_25901	NA	unknown function
UHGV-0108540_42	eggNOG-mapper	411468.CLOSCI_01498	NA	NA
UHGV-0108540_43	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0108540_43	UniRef90	UniRef90_A0A316R7C3	Phage tail tape measure protein	NA
UHGV-0108540_43	eggNOG-mapper	35241.Q9AYV8_BPTU2	peptidoglycan catabolic process	NA
UHGV-0108540_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0108540_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0108540_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0108540_44	UniRef90	UniRef90_UPI0019689066	phage tail protein	NA
UHGV-0108540_44	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0108540_44	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0108540_44	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0108540_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0108540_44	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0108540_45	PHROG	phrog_13289	tail protein	tail
UHGV-0108540_45	UniRef90	UniRef90_A0A316RM27	Prophage_tail domain-containing protein	NA
UHGV-0108540_45	eggNOG-mapper	1235798.C817_04594	Prophage endopeptidase tail	NA
UHGV-0108540_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0108540_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0108540_45	COG	COG4926	Phage-related protein	NA
UHGV-0108540_46	UniRef90	UniRef90_A0A316R9D9	BppU_N domain-containing protein	NA
UHGV-0108540_46	eggNOG-mapper	641107.CDLVIII_4353	NA	NA
UHGV-0108540_46	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0108540_46	Structural annotation	PF00386, NF033147	NA	NA