UHGV-0108581

Genome information

Genome length 30,560 bps

CDS count 56

Completeness 55.17% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108581
vOTU ID	vOTU-041897
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_246118
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	55.17% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	12
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.25
Jumbo phage	No

Genome content
Genome length	30,560 bps
GC content	44.41%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	93.84%
Average CDS length	516.91 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108581_1	eggNOG-mapper	1507.HMPREF0262_00831	NA	NA
UHGV-0108581_3	eggNOG-mapper	1163671.JAGI01000002_gene1246	NA	NA
UHGV-0108581_5	UniRef90	UniRef90_A0A849XWH0	Helix-turn-helix transcriptional regulator	NA
UHGV-0108581_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108581_5	Structural annotation	PF13443, TIGR03070, COG3655	NA	NA
UHGV-0108581_10	eggNOG-mapper	411467.BACCAP_03927	NA	NA
UHGV-0108581_12	Structural annotation	PF07202	NA	NA
UHGV-0108581_13	UniRef90	UniRef90_A0A395V6B2	NA	NA
UHGV-0108581_13	eggNOG-mapper	1235802.C823_05491	NA	NA
UHGV-0108581_13	Pfam	PF14190	NA	DUF4313
UHGV-0108581_13	Structural annotation	PF14190	NA	NA
UHGV-0108581_14	UniRef90	UniRef90_W1I488	Uncultured bacterium extrachromosomal DNA RGI00017	NA
UHGV-0108581_14	eggNOG-mapper	1232443.BAIA02000042_gene2393	NA	NA
UHGV-0108581_16	PHROG	phrog_33611	NA	unknown function
UHGV-0108581_16	eggNOG-mapper	1226322.HMPREF1545_03511	NA	NA
UHGV-0108581_16	Structural annotation	PF07215	NA	NA
UHGV-0108581_17	PHROG	phrog_19490	NA	unknown function
UHGV-0108581_17	UniRef90	UniRef90_A0A373PQX3	Glutathione peroxidase	NA
UHGV-0108581_17	eggNOG-mapper	478749.BRYFOR_07523	NA	NA
UHGV-0108581_19	PHROG	phrog_23707	NA	unknown function
UHGV-0108581_19	UniRef90	UniRef90_A0A2N5P299	Alanine racemase	NA
UHGV-0108581_19	eggNOG-mapper	537007.BLAHAN_04222	NA	NA
UHGV-0108581_20	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0108581_21	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0108581_21	UniRef90	UniRef90_A0A395V1U8	Restriction alleviation protein, Lar family	NA
UHGV-0108581_21	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0108581_21	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0108581_21	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0108581_23	UniRef90	UniRef90_R7NA70	Putative long-chain-fatty-acid-CoA ligase	NA
UHGV-0108581_23	eggNOG-mapper	411470.RUMGNA_02041	NA	NA
UHGV-0108581_24	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0108581_24	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0108581_24	UniRef90	UniRef90_A0A2N5P2A9	ParB domain-containing protein	NA
UHGV-0108581_24	eggNOG-mapper	411461.DORFOR_01144	Belongs to the ParB family	NA
UHGV-0108581_24	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0108581_24	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0108581_24	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0108581_24	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0108581_25	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0108581_25	PHROG	phrog_95	integrase	integration and excision
UHGV-0108581_25	UniRef90	UniRef90_UPI0018A8B677	recombinase family protein	NA
UHGV-0108581_25	eggNOG-mapper	457412.RSAG_01189	resolvase	NA
UHGV-0108581_25	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0108581_25	Pfam	PF07508	Recombinase	Recombinase
UHGV-0108581_25	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0108581_25	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0108581_25	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0108581_27	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0108581_27	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0108581_27	UniRef90	UniRef90_UPI001D0DD847	helix-turn-helix domain-containing protein	NA
UHGV-0108581_27	eggNOG-mapper	411459.RUMOBE_01022	sequence-specific DNA binding	NA
UHGV-0108581_27	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108581_27	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0108581_27	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0108581_28	UniRef90	UniRef90_UPI0018AA1EEF	helix-turn-helix domain-containing protein	NA
UHGV-0108581_28	eggNOG-mapper	411459.RUMOBE_01024	NA	NA
UHGV-0108581_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108581_28	Structural annotation	PF12844, TIGR00673, COG3655	NA	NA
UHGV-0108581_29	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0108581_29	UniRef90	UniRef90_D4J8N7	Helix-turn-helix	NA
UHGV-0108581_29	eggNOG-mapper	290402.Cbei_1617	NA	NA
UHGV-0108581_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108581_29	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0108581_29	Structural annotation	PF06892, NF040522, COG1476	NA	NA
UHGV-0108581_34	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0108581_34	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0108581_34	UniRef90	UniRef90_UPI0018ABB1A4	recombinase RecT	NA
UHGV-0108581_34	eggNOG-mapper	1122947.FR7_2503	Recombinase, phage RecT family	NA
UHGV-0108581_34	Pfam	PF03837	RecT family	RecT
UHGV-0108581_34	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0108581_34	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0108581_34	Structural annotation	PF03837, TIGR00616, COG3723	NA	NA
UHGV-0108581_35	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0108581_35	UniRef90	UniRef90_UPI0018A9B9C1	PD-(D/E)XK nuclease-like domain-containing protein	NA
UHGV-0108581_35	eggNOG-mapper	742733.HMPREF9469_01848	NA	NA
UHGV-0108581_35	Pfam	PF12684	NA	DUF3799
UHGV-0108581_35	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0108581_35	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0108581_36	PHROG	phrog_9474	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0108581_36	eggNOG-mapper	33035.JPJF01000122_gene2459	NA	NA
UHGV-0108581_36	Structural annotation	PF09681, TIGR01714, COG3756	NA	NA
UHGV-0108581_37	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0108581_37	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0108581_37	UniRef90	UniRef90_UPI0018A8E70C	ATP-binding protein	NA
UHGV-0108581_37	eggNOG-mapper	411459.RUMOBE_01035	NA	NA
UHGV-0108581_37	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0108581_37	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-0108581_37	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0108581_37	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-0108581_38	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0108581_38	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0108581_38	UniRef90	UniRef90_UPI0018ABE03D	helix-turn-helix transcriptional regulator	NA
UHGV-0108581_38	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108581_38	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0108581_38	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0108581_39	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0108581_39	UniRef90	UniRef90_UPI0018AAB697	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0108581_39	eggNOG-mapper	411459.RUMOBE_01038	COG COG4570 Holliday junction resolvase	NA
UHGV-0108581_39	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0108581_39	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0108581_39	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0108581_42	PHROG	phrog_5984	NA	unknown function
UHGV-0108581_42	eggNOG-mapper	411459.RUMOBE_01041	NA	NA
UHGV-0108581_42	Structural annotation	PF19561	NA	NA
UHGV-0108581_44	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0108581_44	eggNOG-mapper	411459.RUMOBE_01043	NA	NA
UHGV-0108581_44	Structural annotation	PF07374, MF_00674, NF005248, COG2739	NA	NA
UHGV-0108581_45	PHROG	phrog_620	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0108581_45	UniRef90	UniRef90_UPI001C018E19	ParB N-terminal domain-containing protein	NA
UHGV-0108581_45	eggNOG-mapper	761193.Runsl_0328	DNA binding	NA
UHGV-0108581_45	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0108581_45	Structural annotation	PF02195, MF_02015, TIGR03764	NA	NA
UHGV-0108581_46	KOfam	K19430	epsN; pyridoxal phosphate-dependent aminotransferase EpsN [EC:2.6.1.-]	NA
UHGV-0108581_46	PHROG	phrog_3139	aminotransferase	other
UHGV-0108581_46	UniRef90	UniRef90_UPI0018AA7491	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA
UHGV-0108581_46	eggNOG-mapper	1414720.CBYM010000011_gene2626	Belongs to the DegT DnrJ EryC1 family	NA
UHGV-0108581_46	Pfam	PF01041	DegT/DnrJ/EryC1/StrS aminotransferase family	DegT_DnrJ_EryC1
UHGV-0108581_46	COG	COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	NA
UHGV-0108581_46	Structural annotation	PF01041, MF_01167, TIGR04181, COG0399	NA	NA
UHGV-0108581_47	KOfam	K15894	pseB, wbjB; UDP-N-acetylglucosamine 4,6-dehydratase/5-epimerase [EC:4.2.1.115 5.1.3.-]	NA
UHGV-0108581_47	PHROG	phrog_540	nucleotide-sugar epimerase	DNA, RNA and nucleotide metabolism
UHGV-0108581_47	UniRef90	UniRef90_UPI0018AC44D0	SDR family NAD(P)-dependent oxidoreductase	NA
UHGV-0108581_47	eggNOG-mapper	911239.CF149_13727	Polysaccharide biosynthesis protein	NA
UHGV-0108581_47	Pfam	PF02719	Polysaccharide biosynthesis protein	Polysacc_synt_2
UHGV-0108581_47	Pfam	PF08485	Polysaccharide biosynthesis protein C-terminal	Polysacc_syn_2C
UHGV-0108581_47	COG	COG1086	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC	NA
UHGV-0108581_47	Structural annotation	PF02719, MF_00955, TIGR04130, COG1086	NA	NA
UHGV-0108581_48	Structural annotation	PF20691, MF_00316, TIGR04017, COG1216	NA	NA
UHGV-0108581_49	UniRef90	UniRef90_UPI0018AA0963	class I SAM-dependent methyltransferase	NA
UHGV-0108581_49	eggNOG-mapper	1235793.C809_00810	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)	NA
UHGV-0108581_49	Pfam	PF13649	Methyltransferase domain	Methyltransf_25
UHGV-0108581_49	COG	COG4123	tRNA1(Val) A37 N6-methylase TrmN6	NA
UHGV-0108581_49	Structural annotation	PF10672, MF_03188, NF001786, COG3897	NA	NA
UHGV-0108581_50	PHROG	phrog_16866	NA	unknown function
UHGV-0108581_50	UniRef90	UniRef90_A0A1C5SUF4	Recombination factor protein RarA	NA
UHGV-0108581_50	eggNOG-mapper	927704.SELR_18260	atpase related to the helicase subunit of the holliday junction resolvase	NA
UHGV-0108581_50	COG	COG2256	Replication-associated recombination protein RarA (DNA-dependent ATPase)	NA
UHGV-0108581_50	Structural annotation	NF011289	NA	NA
UHGV-0108581_51	PHROG	phrog_18237	NA	unknown function
UHGV-0108581_52	PHROG	phrog_2412	NA	unknown function
UHGV-0108581_52	UniRef90	UniRef90_UPI0011CC13F5	stress-induced protein	NA
UHGV-0108581_52	eggNOG-mapper	742765.HMPREF9457_02118	NA	NA
UHGV-0108581_53	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0108581_53	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0108581_53	UniRef90	UniRef90_A0A4R3JJ52	PBSX family phage terminase large subunit	NA
UHGV-0108581_53	eggNOG-mapper	1292035.H476_1019	Phage terminase large subunit	NA
UHGV-0108581_53	COG	COG1783	Phage terminase large subunit	NA
UHGV-0108581_53	Structural annotation	PF04466, PF20441, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0108581_54	PHROG	phrog_533	portal protein	head and packaging
UHGV-0108581_54	UniRef90	UniRef90_UPI0018AB6B5F	phage portal protein	NA
UHGV-0108581_54	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0108581_54	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0108581_54	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0108581_55	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0108581_55	UniRef90	UniRef90_UPI0018A927CD	phage minor capsid protein	NA
UHGV-0108581_55	eggNOG-mapper	411490.ANACAC_00781	NA	NA
UHGV-0108581_55	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0108581_55	COG	COG2369	NA	NA
UHGV-0108581_55	Structural annotation	PF06152	NA	NA
UHGV-0108581_56	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0108581_56	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0108581_56	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0108581_56	Structural annotation	PF14359	NA	NA