UHGV-0108824

Genome information

Genome length 65,688 bps

CDS count 95

Completeness 99.90% (high-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108824
vOTU ID	vOTU-060465
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_248411
BioSample	SAMEA3708788
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.93
Jumbo phage	No

Genome content
Genome length	65,688 bps
GC content	38.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	95
CDS density	88.99%
Average CDS length	618.76 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108824_1	KOfam	K14059	int; integrase	NA
UHGV-0108824_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0108824_1	UniRef90	UniRef90_UPI00189A780D	tyrosine-type recombinase/integrase	NA
UHGV-0108824_1	eggNOG-mapper	665950.HMPREF1025_01927	Phage integrase family	NA
UHGV-0108824_1	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0108824_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0108824_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0108824_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0108824_2	PHROG	phrog_10675	NA	unknown function
UHGV-0108824_2	UniRef90	UniRef90_UPI00164A3B96	NA	NA
UHGV-0108824_2	eggNOG-mapper	411460.RUMTOR_02456	COG NOG23522 non supervised orthologous group	NA
UHGV-0108824_2	Pfam	PF20020	NA	DUF6431
UHGV-0108824_2	COG	COG3464	Transposase	NA
UHGV-0108824_2	Structural annotation	PF20020, TIGR03831, COG3436	NA	NA
UHGV-0108824_3	PHROG	phrog_6058	NA	unknown function
UHGV-0108824_3	UniRef90	UniRef90_A0A4Q7P3C7	Prolyl-tRNA synthetase	NA
UHGV-0108824_3	eggNOG-mapper	742733.HMPREF9469_05094	NA	NA
UHGV-0108824_4	PHROG	phrog_11237	NA	unknown function
UHGV-0108824_4	eggNOG-mapper	742733.HMPREF9469_05093	NA	NA
UHGV-0108824_5	Structural annotation	PF18391	NA	NA
UHGV-0108824_8	UniRef90	UniRef90_UPI00156F086B	zinc ribbon domain-containing protein	NA
UHGV-0108824_8	eggNOG-mapper	515622.bpr_IV105	NA	NA
UHGV-0108824_10	PHROG	phrog_27480	NA	unknown function
UHGV-0108824_12	PHROG	phrog_15866	NA	unknown function
UHGV-0108824_14	PHROG	phrog_17256	NA	unknown function
UHGV-0108824_14	eggNOG-mapper	478749.BRYFOR_08574	NA	NA
UHGV-0108824_17	eggNOG-mapper	658655.HMPREF0988_02357	NA	NA
UHGV-0108824_17	Pfam	PF20234	NA	DUF6591
UHGV-0108824_17	Structural annotation	PF20234	NA	NA
UHGV-0108824_22	PHROG	phrog_2152	NA	unknown function
UHGV-0108824_22	UniRef90	UniRef90_UPI001956236B	NA	NA
UHGV-0108824_22	eggNOG-mapper	742740.HMPREF9474_02318	NA	NA
UHGV-0108824_22	Pfam	PF19880	NA	DUF6353
UHGV-0108824_22	Structural annotation	PF19880	NA	NA
UHGV-0108824_27	PHROG	phrog_2152	NA	unknown function
UHGV-0108824_27	UniRef90	UniRef90_UPI0018AB827B	NA	NA
UHGV-0108824_27	eggNOG-mapper	478749.BRYFOR_08569	NA	NA
UHGV-0108824_27	Pfam	PF19880	NA	DUF6353
UHGV-0108824_27	Structural annotation	PF19880	NA	NA
UHGV-0108824_29	PHROG	phrog_15567	NA	unknown function
UHGV-0108824_29	eggNOG-mapper	411460.RUMTOR_02026	NA	NA
UHGV-0108824_29	Structural annotation	MF_00273, COG2157	NA	NA
UHGV-0108824_30	PHROG	phrog_4079	NA	unknown function
UHGV-0108824_30	eggNOG-mapper	742733.HMPREF9469_05076	NA	NA
UHGV-0108824_31	KOfam	K17081	PHB2; prohibitin 2	NA
UHGV-0108824_31	PHROG	phrog_200	lipoprotein	other
UHGV-0108824_31	UniRef90	UniRef90_UPI001C1078BF	prohibitin family protein	NA
UHGV-0108824_31	eggNOG-mapper	33035.JPJF01000066_gene3563	prohibitin homologues	NA
UHGV-0108824_31	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0108824_31	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0108824_31	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0108824_33	PHROG	phrog_20637	NA	unknown function
UHGV-0108824_33	UniRef90	UniRef90_UPI0015FC4FD5	NA	NA
UHGV-0108824_33	eggNOG-mapper	411460.RUMTOR_01376	NA	NA
UHGV-0108824_33	Pfam	PF18907	NA	DUF5662
UHGV-0108824_33	Structural annotation	PF18907	NA	NA
UHGV-0108824_36	PHROG	phrog_14301	RNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0108824_36	UniRef90	UniRef90_UPI001BCD9F22	NA	NA
UHGV-0108824_36	eggNOG-mapper	485918.Cpin_3888	NA	NA
UHGV-0108824_36	Structural annotation	PF17720	NA	NA
UHGV-0108824_40	PHROG	phrog_23747	NA	unknown function
UHGV-0108824_40	UniRef90	UniRef90_A0A7Y9A9N6	Magnesium-transporting ATPase (P-type)	NA
UHGV-0108824_40	Structural annotation	NF040944	NA	NA
UHGV-0108824_51	Structural annotation	COG4446	NA	NA
UHGV-0108824_52	PHROG	phrog_6721	NA	unknown function
UHGV-0108824_52	eggNOG-mapper	537007.BLAHAN_05521	NA	NA
UHGV-0108824_53	PHROG	phrog_2316	NA	unknown function
UHGV-0108824_53	UniRef90	UniRef90_UPI001570BA1B	NA	NA
UHGV-0108824_53	eggNOG-mapper	1280698.AUJS01000007_gene1022	NA	NA
UHGV-0108824_53	Pfam	PF16475	NA	DUF5052
UHGV-0108824_53	Structural annotation	PF16475	NA	NA
UHGV-0108824_54	PHROG	phrog_8684	NA	unknown function
UHGV-0108824_54	UniRef90	UniRef90_A0A6L6LPX4	YopX domain-containing protein	NA
UHGV-0108824_54	eggNOG-mapper	1122605.KB893643_gene656	YopX protein	NA
UHGV-0108824_54	Pfam	PF09643	YopX protein	YopX
UHGV-0108824_58	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0108824_60	PHROG	phrog_8684	NA	unknown function
UHGV-0108824_60	Pfam	PF09643	YopX protein	YopX
UHGV-0108824_60	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0108824_62	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108824_63	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0108824_63	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0108824_63	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108824_63	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0108824_64	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0108824_64	UniRef90	UniRef90_A0A396PI35	NUMOD4 domain-containing protein	NA
UHGV-0108824_64	eggNOG-mapper	476272.RUMHYD_03335	HNH endonuclease	NA
UHGV-0108824_64	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-0108824_64	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0108824_65	UniRef90	UniRef90_A0A4D6E4Q9	Hydrolase	NA
UHGV-0108824_65	eggNOG-mapper	742740.HMPREF9474_02280	NA	NA
UHGV-0108824_65	Structural annotation	PF01870, COG1591	NA	NA
UHGV-0108824_66	PHROG	phrog_3953	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0108824_66	UniRef90	UniRef90_A0A374ABF7	NA	NA
UHGV-0108824_66	eggNOG-mapper	742740.HMPREF9474_02279	NA	NA
UHGV-0108824_66	Pfam	PF10926	NA	DUF2800
UHGV-0108824_66	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-0108824_67	PHROG	phrog_4291	RNA-dependent RNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0108824_67	eggNOG-mapper	665956.HMPREF1032_00665	Bacterial regulatory proteins, luxR family	NA
UHGV-0108824_68	PHROG	phrog_4303	NA	unknown function
UHGV-0108824_68	eggNOG-mapper	742733.HMPREF9469_05038	NA	NA
UHGV-0108824_69	eggNOG-mapper	1304866.K413DRAFT_4770	PFAM Formylglycine-generating sulfatase enzyme	NA
UHGV-0108824_69	COG	COG1262	Formylglycine-generating enzyme, required for sulfatase activity, contains SUMF1/FGE domain	NA
UHGV-0108824_70	eggNOG-mapper	641524.ADICYQ_1391	lipolytic protein G-D-S-L family	NA
UHGV-0108824_70	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0108824_71	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0108824_71	UniRef90	UniRef90_A0A373C8E1	Structural protein	NA
UHGV-0108824_71	eggNOG-mapper	665950.HMPREF1025_01991	NA	NA
UHGV-0108824_73	PHROG	phrog_4259	NA	unknown function
UHGV-0108824_73	eggNOG-mapper	742733.HMPREF9469_05037	NA	NA
UHGV-0108824_74	PHROG	phrog_4321	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0108824_74	eggNOG-mapper	665956.HMPREF1032_00668	NA	NA
UHGV-0108824_75	PHROG	phrog_4247	virion structural protein	head and packaging
UHGV-0108824_75	UniRef90	UniRef90_A0A373C8E1	Structural protein	NA
UHGV-0108824_75	eggNOG-mapper	742733.HMPREF9469_05035	NA	NA
UHGV-0108824_76	PHROG	phrog_32444	NA	unknown function
UHGV-0108824_77	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0108824_77	UniRef90	UniRef90_A0A2G9DB66	Terminase (Fragment)	NA
UHGV-0108824_77	eggNOG-mapper	742740.HMPREF9474_02272	Phage Terminase	NA
UHGV-0108824_77	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0108824_78	Structural annotation	PF16789, TIGR02473, COG1579	NA	NA
UHGV-0108824_79	PHROG	phrog_12	portal protein	head and packaging
UHGV-0108824_79	UniRef90	UniRef90_A0A396PDA9	Phage portal protein	NA
UHGV-0108824_79	eggNOG-mapper	428125.CLOLEP_01411	Phage portal protein	NA
UHGV-0108824_79	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0108824_79	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0108824_80	KOfam	K06904	NA	NA
UHGV-0108824_80	PHROG	phrog_3270	head maturation protease	head and packaging
UHGV-0108824_80	UniRef90	UniRef90_A0A374ADM0	Phage major capsid protein	NA
UHGV-0108824_80	eggNOG-mapper	691965.D4P7D6_9CAUD	peptidase activity	NA
UHGV-0108824_80	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0108824_80	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0108824_80	Structural annotation	PF04586, PF06673, TIGR01543, TIGR01554, COG3740, COG4653	NA	NA
UHGV-0108824_81	PHROG	phrog_4270	NA	unknown function
UHGV-0108824_81	eggNOG-mapper	411460.RUMTOR_01344	NA	NA
UHGV-0108824_81	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0108824_82	PHROG	phrog_78	tail terminator	connector
UHGV-0108824_82	UniRef90	UniRef90_A0A4D6T7G6	Tail terminator	NA
UHGV-0108824_82	eggNOG-mapper	478749.BRYFOR_08519	NA	NA
UHGV-0108824_82	Structural annotation	PF20765	NA	NA
UHGV-0108824_83	PHROG	phrog_2645	major tail protein	tail
UHGV-0108824_83	UniRef90	UniRef90_A0A2U8UI58	Major tail protein	NA
UHGV-0108824_83	eggNOG-mapper	742733.HMPREF9469_05026	NA	NA
UHGV-0108824_83	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0108824_84	PHROG	phrog_4282	NA	unknown function
UHGV-0108824_84	eggNOG-mapper	478749.BRYFOR_08517	NA	NA
UHGV-0108824_85	PHROG	phrog_4338	NA	unknown function
UHGV-0108824_85	eggNOG-mapper	478749.BRYFOR_08516	NA	NA
UHGV-0108824_86	UniRef90	UniRef90_A0A374AC21	HK97 gp10 family phage protein	NA
UHGV-0108824_86	eggNOG-mapper	478749.BRYFOR_08514	NA	NA
UHGV-0108824_86	Structural annotation	TIGR01725	NA	NA
UHGV-0108824_87	PHROG	phrog_4372	tail length tape measure protein	tail
UHGV-0108824_87	UniRef90	UniRef90_UPI0018AB58C5	tape measure protein	NA
UHGV-0108824_87	eggNOG-mapper	478749.BRYFOR_08513	Peptidoglycan-binding domain 1 protein	NA
UHGV-0108824_87	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0108824_87	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0108824_87	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0108824_87	COG	COG3409	Peptidoglycan-binding (PGRP) domain of peptidoglycan hydrolases	NA
UHGV-0108824_88	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0108824_88	PHROG	phrog_380	endolysin	lysis
UHGV-0108824_88	UniRef90	UniRef90_UPI001314CF95	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0108824_88	eggNOG-mapper	478749.BRYFOR_08512	Fibronectin type 3 domain	NA
UHGV-0108824_88	Pfam	PF01476	LysM domain	LysM
UHGV-0108824_88	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0108824_88	Structural annotation	PF06995, PF02010, PF18001, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-0108824_89	PHROG	phrog_1887	tail protein	tail
UHGV-0108824_89	UniRef90	UniRef90_UPI001C38532D	phage tail protein	NA
UHGV-0108824_89	eggNOG-mapper	478749.BRYFOR_08511	NA	NA
UHGV-0108824_89	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0108824_90	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0108824_90	PHROG	phrog_15074	NA	unknown function
UHGV-0108824_90	eggNOG-mapper	762982.HMPREF9442_01191	cellulase activity	NA
UHGV-0108824_90	Pfam	PF19079	Collagen-flanked surface repeat	CFSR
UHGV-0108824_90	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0108824_91	PHROG	phrog_2566	NA	unknown function
UHGV-0108824_91	eggNOG-mapper	1139219.I569_00244	NA	NA
UHGV-0108824_92	PHROG	phrog_1129	holin	lysis
UHGV-0108824_92	UniRef90	UniRef90_A0A414P831	Holin	NA
UHGV-0108824_92	eggNOG-mapper	478749.BRYFOR_08506	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0108824_92	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0108824_92	Structural annotation	PF06946	NA	NA
UHGV-0108824_93	UniRef90	UniRef90_UPI001E4D989F	CTP synthase	NA
UHGV-0108824_93	eggNOG-mapper	411490.ANACAC_00705	NA	NA
UHGV-0108824_95	PHROG	phrog_2649	endolysin	lysis
UHGV-0108824_95	UniRef90	UniRef90_A0A6N2TV57	Peptidoglycan binding domain protein	NA
UHGV-0108824_95	eggNOG-mapper	411459.RUMOBE_01713	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0108824_95	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0108824_95	COG	COG1388	LysM repeat	NA
UHGV-0108824_95	Structural annotation	PF01374, PF10030, TIGR02594	NA	NA