UHGV-0108950

Genome information

Genome length 28,143 bps

CDS count 49

Completeness 74.86% (medium-quality)

geNomad score 0.9805

Prediction confidence Confident

Genome information
Genome ID	UHGV-0108950
vOTU ID	vOTU-015562
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_249992
BioSample	SAMEA3708769
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	74.86% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9805
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.01
Jumbo phage	No

Genome content
Genome length	28,143 bps
GC content	51.20%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	49
CDS density	94.26%
Average CDS length	547.90 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0108950_2	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0108950_2	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0108950_2	UniRef90	UniRef90_R5Y1G1	Putative phage repressor	NA
UHGV-0108950_2	eggNOG-mapper	1262914.BN533_00809	Peptidase S24-like	NA
UHGV-0108950_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0108950_2	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0108950_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0108950_2	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0108950_3	UniRef90	UniRef90_R6I666	Putative cro repressor	NA
UHGV-0108950_3	eggNOG-mapper	1262914.BN533_00808	NA	NA
UHGV-0108950_3	Pfam	PF05339	NA	DUF739
UHGV-0108950_3	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0108950_3	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0108950_4	PHROG	phrog_6058	NA	unknown function
UHGV-0108950_4	eggNOG-mapper	693746.OBV_19810	NA	NA
UHGV-0108950_6	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0108950_6	PHROG	phrog_18750	NA	unknown function
UHGV-0108950_6	UniRef90	UniRef90_A0A3D5TM41	Hydrolase_2 domain-containing protein	NA
UHGV-0108950_6	eggNOG-mapper	1203606.HMPREF1526_01876	Cell wall hydrolase	NA
UHGV-0108950_6	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0108950_6	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0108950_6	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0108950_9	PHROG	phrog_924	NA	unknown function
UHGV-0108950_9	UniRef90	UniRef90_UPI001958DC75	NA	NA
UHGV-0108950_9	eggNOG-mapper	665950.HMPREF1025_02540	NA	NA
UHGV-0108950_9	Pfam	PF04448	NA	DUF551
UHGV-0108950_9	Structural annotation	PF04448	NA	NA
UHGV-0108950_10	PHROG	phrog_22040	NA	unknown function
UHGV-0108950_10	Structural annotation	PF07073, COG4568	NA	NA
UHGV-0108950_14	PHROG	phrog_824	NA	unknown function
UHGV-0108950_14	UniRef90	UniRef90_A0A3D5TLJ2	VRR-NUC domain-containing protein	NA
UHGV-0108950_14	eggNOG-mapper	1235792.C808_00075	VRR_NUC	NA
UHGV-0108950_14	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0108950_14	Structural annotation	PF08774, COG1996	NA	NA
UHGV-0108950_15	PHROG	phrog_3777	NA	unknown function
UHGV-0108950_15	UniRef90	UniRef90_A0A417F5N7	NA	NA
UHGV-0108950_15	eggNOG-mapper	1504823.CCMM01000006_gene385	Antirestriction protein (ArdA)	NA
UHGV-0108950_15	Pfam	PF12957	NA	DUF3846
UHGV-0108950_15	COG	COG2105	Predicted gamma-glutamylamine cyclotransferase YtfP, GGCT/AIG2-like family	NA
UHGV-0108950_16	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0108950_16	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0108950_16	UniRef90	UniRef90_A0A3D1I1E6	ParB domain-containing protein	NA
UHGV-0108950_16	eggNOG-mapper	394503.Ccel_3306	Belongs to the ParB family	NA
UHGV-0108950_16	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0108950_16	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0108950_16	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0108950_16	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA
UHGV-0108950_20	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0108950_23	eggNOG-mapper	1235790.C805_00069	Restriction alleviation protein Lar	NA
UHGV-0108950_23	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0108950_24	PHROG	phrog_24518	NA	unknown function
UHGV-0108950_24	eggNOG-mapper	693746.OBV_25370	NA	NA
UHGV-0108950_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0108950_25	eggNOG-mapper	537013.CLOSTMETH_02141	NA	NA
UHGV-0108950_25	Structural annotation	PF21578, MF_00360	NA	NA
UHGV-0108950_28	PHROG	phrog_11237	NA	unknown function
UHGV-0108950_28	eggNOG-mapper	537013.CLOSTMETH_01096	NA	NA
UHGV-0108950_28	Structural annotation	TIGR01636	NA	NA
UHGV-0108950_29	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0108950_29	PHROG	phrog_12862	NA	unknown function
UHGV-0108950_29	UniRef90	UniRef90_UPI000A26DFF4	site-specific DNA-methyltransferase	NA
UHGV-0108950_29	eggNOG-mapper	1120998.AUFC01000030_gene2227	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-0108950_29	PADLOC	MTase_II_00037	Type II methyltransferase	RM
UHGV-0108950_29	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0108950_29	COG	COG0863	DNA modification methylase	NA
UHGV-0108950_29	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0108950_31	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0108950_31	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0108950_31	UniRef90	UniRef90_UPI0006D7C695	HNH endonuclease	NA
UHGV-0108950_31	eggNOG-mapper	1508644.SFBmNL_01550	HNH endonuclease	NA
UHGV-0108950_31	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0108950_31	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0108950_31	Structural annotation	PF05766	NA	NA
UHGV-0108950_32	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0108950_32	UniRef90	UniRef90_UPI00067FA7FA	phage terminase small subunit P27 family	NA
UHGV-0108950_32	eggNOG-mapper	1567013.A0A0A7S0C4_9CAUD	Phage terminase, small subunit	NA
UHGV-0108950_32	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0108950_32	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0108950_32	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0108950_33	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0108950_33	UniRef90	UniRef90_UPI000C7CE66A	terminase large subunit	NA
UHGV-0108950_33	eggNOG-mapper	742738.HMPREF9460_04067	Phage terminase-like protein large subunit	NA
UHGV-0108950_33	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0108950_33	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0108950_33	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0108950_33	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0108950_34	PHROG	phrog_12	portal protein	head and packaging
UHGV-0108950_34	UniRef90	UniRef90_UPI001C11FE4E	phage portal protein	NA
UHGV-0108950_34	eggNOG-mapper	634956.Geoth_0787	Phage portal protein	NA
UHGV-0108950_34	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0108950_34	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0108950_34	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0108950_34	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0108950_35	PHROG	phrog_16951	NA	unknown function
UHGV-0108950_35	eggNOG-mapper	246199.CUS_7602	NA	NA
UHGV-0108950_35	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0108950_36	PHROG	phrog_10	major head protein	head and packaging
UHGV-0108950_36	UniRef90	UniRef90_UPI000C7BECD8	phage major capsid protein	NA
UHGV-0108950_36	eggNOG-mapper	1414720.CBYM010000002_gene572	Phage major capsid protein, HK97 family	NA
UHGV-0108950_36	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0108950_36	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0108950_36	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0108950_36	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0108950_37	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0108950_37	UniRef90	UniRef90_UPI0006544DF9	head-tail connector protein	NA
UHGV-0108950_37	eggNOG-mapper	1274524.BSONL12_06143	Phage gp6-like head-tail connector protein	NA
UHGV-0108950_37	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0108950_37	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0108950_37	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0108950_38	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0108950_38	eggNOG-mapper	457396.CSBG_01051	head-tail adaptor	NA
UHGV-0108950_38	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0108950_38	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0108950_39	UniRef90	UniRef90_A0A174CK72	Phage protein, HK97 gp10 family	NA
UHGV-0108950_39	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-0108950_39	Structural annotation	TIGR01725	NA	NA
UHGV-0108950_40	PHROG	phrog_78	tail terminator	connector
UHGV-0108950_40	eggNOG-mapper	1238184.CM001792_gene2512	NA	NA
UHGV-0108950_40	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0108950_41	PHROG	phrog_88	major tail protein	tail
UHGV-0108950_41	UniRef90	UniRef90_UPI001D07B441	major tail protein	NA
UHGV-0108950_41	eggNOG-mapper	411459.RUMOBE_00930	NA	NA
UHGV-0108950_41	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0108950_41	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0108950_42	Structural annotation	PF11836	NA	NA
UHGV-0108950_43	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0108950_43	UniRef90	UniRef90_A0A316QKN8	Phage tail protein (Fragment)	NA
UHGV-0108950_43	eggNOG-mapper	994573.T472_0201810	tape measure	NA
UHGV-0108950_43	COG	COG5185	Chromosome segregation protein NDC80, interacts with SMC proteins	NA
UHGV-0108950_43	Structural annotation	PF05537, MF_04138, COG5281	NA	NA
UHGV-0108950_44	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0108950_44	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0108950_44	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0108950_44	COG	COG4722	Phage-related protein YomH	NA
UHGV-0108950_44	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0108950_45	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0108950_45	UniRef90	UniRef90_R6GLF8	Phage minor structural protein region	NA
UHGV-0108950_45	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0108950_45	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0108950_45	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0108950_45	COG	COG4926	Phage-related protein	NA
UHGV-0108950_45	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0108950_47	Structural annotation	PF20622, COG5456	NA	NA
UHGV-0108950_48	eggNOG-mapper	411471.SUBVAR_06929	ATPase involved in DNA repair	NA
UHGV-0108950_48	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA