UHGV-0109135

Genome information

Genome length 46,461 bps

CDS count 72

Completeness 88.73% (medium-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109135
vOTU ID	vOTU-040191
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_236276
BioSample	SAMEA3708515
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	88.73% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.4
Jumbo phage	No

Genome content
Genome length	46,461 bps
GC content	43.91%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	72
CDS density	91.74%
Average CDS length	595.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109135_2	KOfam	K14056	puuR; HTH-type transcriptional regulator, repressor for puuD	NA
UHGV-0109135_2	PHROG	phrog_5823	transcriptional regulator	transcription regulation
UHGV-0109135_2	UniRef90	UniRef90_UPI0012B172A0	helix-turn-helix transcriptional regulator	NA
UHGV-0109135_2	eggNOG-mapper	435590.BVU_3426	Helix-turn-helix domain	NA
UHGV-0109135_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109135_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109135_6	PHROG	phrog_13160	NA	unknown function
UHGV-0109135_6	UniRef90	UniRef90_UPI001EDA756F	zinc ribbon domain-containing protein	NA
UHGV-0109135_7	UniRef90	UniRef90_UPI000EFC0AAB	DNA-binding protein	NA
UHGV-0109135_8	UniRef90	UniRef90_UPI0011C3B561	NA	NA
UHGV-0109135_9	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0109135_9	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109135_9	UniRef90	UniRef90_UPI000E392D0B	HNH endonuclease	NA
UHGV-0109135_9	eggNOG-mapper	1268240.ATFI01000007_gene425	HNH endonuclease	NA
UHGV-0109135_9	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0109135_9	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0109135_11	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0109135_11	UniRef90	UniRef90_UPI0015FA7366	phage terminase small subunit P27 family	NA
UHGV-0109135_11	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0109135_11	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0109135_11	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0109135_11	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0109135_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0109135_12	UniRef90	UniRef90_UPI000EFAEBC4	terminase large subunit	NA
UHGV-0109135_12	eggNOG-mapper	1347393.HG726026_gene2611	Phage Terminase	NA
UHGV-0109135_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0109135_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0109135_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0109135_12	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0109135_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0109135_13	UniRef90	UniRef90_UPI000EFC0CE6	phage portal protein	NA
UHGV-0109135_13	eggNOG-mapper	1347393.HG726026_gene2612	Phage portal protein	NA
UHGV-0109135_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0109135_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0109135_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0109135_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0109135_14	KOfam	K06904	NA	NA
UHGV-0109135_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0109135_14	UniRef90	UniRef90_UPI000F00EFDD	HK97 family phage prohead protease	NA
UHGV-0109135_14	eggNOG-mapper	908937.Prede_1354	Caudovirus prohead serine protease	NA
UHGV-0109135_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0109135_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0109135_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0109135_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0109135_15	PHROG	phrog_617	major head protein	head and packaging
UHGV-0109135_15	UniRef90	UniRef90_UPI0018AC12B5	phage major capsid protein	NA
UHGV-0109135_15	eggNOG-mapper	1347393.HG726026_gene2614	Phage capsid family	NA
UHGV-0109135_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0109135_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0109135_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0109135_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0109135_16	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0109135_16	UniRef90	UniRef90_UPI0018ABD3B6	head-tail connector protein	NA
UHGV-0109135_16	eggNOG-mapper	1347393.HG726026_gene2615	Phage gp6-like head-tail connector protein	NA
UHGV-0109135_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0109135_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0109135_16	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0109135_17	PHROG	phrog_25	head closure Hc1	connector
UHGV-0109135_17	UniRef90	UniRef90_UPI000EFB77D5	phage head closure protein	NA
UHGV-0109135_17	eggNOG-mapper	1347393.HG726020_gene893	Phage head-tail joining protein	NA
UHGV-0109135_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0109135_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0109135_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0109135_18	eggNOG-mapper	1347393.HG726020_gene892	NA	NA
UHGV-0109135_18	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0109135_19	UniRef90	UniRef90_UPI000F00A35C	NA	NA
UHGV-0109135_19	eggNOG-mapper	1347393.HG726020_gene891	NA	NA
UHGV-0109135_19	Pfam	PF11367	NA	DUF3168
UHGV-0109135_19	Structural annotation	PF11367, COG5003	NA	NA
UHGV-0109135_20	PHROG	phrog_1407	major tail protein	tail
UHGV-0109135_20	UniRef90	UniRef90_UPI0018AC0466	phage tail tube protein	NA
UHGV-0109135_20	eggNOG-mapper	908937.Prede_1348	Phage tail tube protein	NA
UHGV-0109135_20	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0109135_20	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0109135_22	PHROG	phrog_16333	NA	unknown function
UHGV-0109135_23	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0109135_23	UniRef90	UniRef90_UPI000EFBF3FC	phage tail tape measure protein	NA
UHGV-0109135_23	eggNOG-mapper	1197719.A464_1008	tail length tape measure	NA
UHGV-0109135_23	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0109135_23	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0109135_23	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0109135_23	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0109135_24	PHROG	phrog_30639	NA	unknown function
UHGV-0109135_24	eggNOG-mapper	997884.HMPREF1068_00297	NA	NA
UHGV-0109135_24	Structural annotation	PF14594, TIGR03361, COG4379	NA	NA
UHGV-0109135_25	PHROG	phrog_22546	NA	unknown function
UHGV-0109135_25	eggNOG-mapper	1235803.C825_03432	Phage minor structural protein	NA
UHGV-0109135_25	COG	COG4926	Phage-related protein	NA
UHGV-0109135_25	Structural annotation	PF03944, PF18141	NA	NA
UHGV-0109135_26	eggNOG-mapper	484018.BACPLE_00652	NA	NA
UHGV-0109135_28	eggNOG-mapper	1235803.C825_03435	translation initiation factor activity	NA
UHGV-0109135_28	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0109135_29	PHROG	phrog_5302	tail protein	tail
UHGV-0109135_29	eggNOG-mapper	470145.BACCOP_01125	NA	NA
UHGV-0109135_29	Structural annotation	PF03426, TIGR04362	NA	NA
UHGV-0109135_30	PHROG	phrog_19665	NA	unknown function
UHGV-0109135_30	eggNOG-mapper	357276.EL88_12845	NA	NA
UHGV-0109135_31	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0109135_31	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0109135_31	UniRef90	UniRef90_A0A496E1Z6	Reverse transcriptase	NA
UHGV-0109135_31	eggNOG-mapper	445970.ALIPUT_02626	NA	NA
UHGV-0109135_31	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0109135_31	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0109135_31	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0109135_31	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0109135_32	PHROG	phrog_11557	NA	unknown function
UHGV-0109135_32	eggNOG-mapper	1235788.C802_00112	NA	NA
UHGV-0109135_33	PHROG	phrog_15037	NA	unknown function
UHGV-0109135_33	UniRef90	UniRef90_UPI0015E74944	phage holin family protein	NA
UHGV-0109135_33	eggNOG-mapper	742766.HMPREF9455_03105	NA	NA
UHGV-0109135_33	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0109135_34	PHROG	phrog_873	endolysin	head and packaging
UHGV-0109135_34	UniRef90	UniRef90_A0A7K0H713	Structural protein P5	NA
UHGV-0109135_34	eggNOG-mapper	1235803.C825_05325	NA	NA
UHGV-0109135_35	PHROG	phrog_872	NA	unknown function
UHGV-0109135_35	UniRef90	UniRef90_UPI001C702C0A	NA	NA
UHGV-0109135_35	eggNOG-mapper	357276.EL88_22925	NA	NA
UHGV-0109135_35	Pfam	PF11195	NA	DUF2829
UHGV-0109135_35	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0109135_35	Structural annotation	PF11195	NA	NA
UHGV-0109135_36	PHROG	phrog_26448	NA	unknown function
UHGV-0109135_36	eggNOG-mapper	411477.PARMER_02011	NA	NA
UHGV-0109135_36	Pfam	PF20647	NA	DUF6808
UHGV-0109135_36	Structural annotation	PF20647	NA	NA
UHGV-0109135_37	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0109135_38	KOfam	K07339	hicA; mRNA interferase HicA [EC:3.1.-.-]	NA
UHGV-0109135_38	PHROG	phrog_353	toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0109135_38	UniRef90	UniRef90_UPI001BAB4D22	type II toxin-antitoxin system HicA family toxin	NA
UHGV-0109135_38	eggNOG-mapper	111780.Sta7437_1736	HicA toxin of bacterial toxin-antitoxin,	NA
UHGV-0109135_38	Pfam	PF07927	HicA toxin of bacterial toxin-antitoxin,	HicA_toxin
UHGV-0109135_38	COG	COG1724	Predicted RNA binding protein YcfA, dsRBD-like fold, HicA-like mRNA interferase family	NA
UHGV-0109135_38	Structural annotation	PF07927, COG1724	NA	NA
UHGV-0109135_39	UniRef90	UniRef90_UPI000EE8F07A	type II toxin-antitoxin system HicB family antitoxin	NA
UHGV-0109135_39	eggNOG-mapper	1121481.AUAS01000011_gene4995	NA	NA
UHGV-0109135_39	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-0109135_39	Structural annotation	PF21748, NF041951, COG1598	NA	NA
UHGV-0109135_40	UniRef90	UniRef90_UPI000E481466	NA	NA
UHGV-0109135_41	UniRef90	UniRef90_A0A7M1RYV9	Nuclear pore complex-like protein	NA
UHGV-0109135_44	KOfam	K14415	RTCB, rtcB; tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]	NA
UHGV-0109135_44	PHROG	phrog_1075	tRNA splicing ligase	DNA, RNA and nucleotide metabolism
UHGV-0109135_44	UniRef90	UniRef90_A0A496E8Z7	RNA-splicing ligase RtcB	NA
UHGV-0109135_44	eggNOG-mapper	398512.JQKC01000002_gene1705	NA	NA
UHGV-0109135_44	Pfam	PF01139	tRNA-splicing ligase RtcB	RtcB
UHGV-0109135_44	COG	COG1690	RNA-splicing ligase RtcB, repairs tRNA damage	NA
UHGV-0109135_44	Structural annotation	PF01139, MF_03144, NF007153, COG1690	NA	NA
UHGV-0109135_49	Structural annotation	PF02257	NA	NA
UHGV-0109135_51	UniRef90	UniRef90_UPI001D12C312	NA	NA
UHGV-0109135_51	eggNOG-mapper	411901.BACCAC_01195	NA	NA
UHGV-0109135_51	Pfam	PF04448	NA	DUF551
UHGV-0109135_51	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0109135_53	PHROG	phrog_8684	NA	unknown function
UHGV-0109135_53	UniRef90	UniRef90_A0A1Q6FH80	YopX domain-containing protein	NA
UHGV-0109135_53	eggNOG-mapper	435591.BDI_0866	YopX protein	NA
UHGV-0109135_53	Pfam	PF09643	YopX protein	YopX
UHGV-0109135_53	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0109135_53	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0109135_55	PHROG	phrog_874	NA	unknown function
UHGV-0109135_55	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0109135_55	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0109135_56	UniRef90	UniRef90_F3PFX8	Conserved domain protein	NA
UHGV-0109135_56	eggNOG-mapper	483216.BACEGG_01967	NA	NA
UHGV-0109135_58	PHROG	phrog_28300	NA	unknown function
UHGV-0109135_58	Structural annotation	PF13066, COG4014	NA	NA
UHGV-0109135_59	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0109135_59	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0109135_59	UniRef90	UniRef90_A6LAB7	Methyltransferase	NA
UHGV-0109135_59	eggNOG-mapper	435591.BDI_0862	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0109135_59	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0109135_59	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0109135_59	COG	COG0338	DNA-adenine methylase	NA
UHGV-0109135_62	PHROG	phrog_1408	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0109135_62	UniRef90	UniRef90_UPI001F03A329	NA	NA
UHGV-0109135_62	eggNOG-mapper	435591.BDI_0859	DnaD domain protein	NA
UHGV-0109135_62	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0109135_62	Structural annotation	PF09681, TIGR01714, COG3355	NA	NA
UHGV-0109135_66	PHROG	phrog_824	NA	unknown function
UHGV-0109135_66	UniRef90	UniRef90_A0A3R5XBR1	VRR-NUC domain-containing protein	NA
UHGV-0109135_66	eggNOG-mapper	411901.BACCAC_01208	NA	NA
UHGV-0109135_66	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0109135_69	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0109135_69	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0109135_69	UniRef90	UniRef90_A0A3L7ZFX8	NA	NA
UHGV-0109135_69	eggNOG-mapper	1321820.HMPREF1983_00508	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-0109135_69	PADLOC	SspH_00002	SspH	SSP
UHGV-0109135_69	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0109135_69	Pfam	PF17854	FtsK alpha domain	FtsK_alpha
UHGV-0109135_69	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0109135_69	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0109135_69	Structural annotation	PF17854, PF12684, PF01580, MF_03030, MF_00350, NF041214, TIGR01896, COG1674	NA	NA
UHGV-0109135_70	PHROG	phrog_3657	NA	unknown function
UHGV-0109135_70	eggNOG-mapper	1211813.CAPH01000015_gene728	NA	NA
UHGV-0109135_70	Structural annotation	PF04404	NA	NA
UHGV-0109135_72	PHROG	phrog_27197	NA	unknown function
UHGV-0109135_72	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0109135_72	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0109135_72	Structural annotation	NF007410	NA	NA