UHGV-0109137

Genome information

Genome length 28,913 bps

CDS count 40

Completeness 71.32% (medium-quality)

geNomad score 0.9721

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109137
vOTU ID	vOTU-018499
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_236273
BioSample	SAMEA3708515
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	71.32% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	Yes
CheckV viral markers	12
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9721
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.22
Jumbo phage	No

Genome content
Genome length	28,913 bps
GC content	38.94%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	95.50%
Average CDS length	693.30 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109137_2	Structural annotation	PF02796, COG2771	NA	NA
UHGV-0109137_3	PHROG	phrog_310	transposase	integration and excision
UHGV-0109137_3	UniRef90	UniRef90_A0A413QHZ6	MerR family transcriptional regulator	NA
UHGV-0109137_3	eggNOG-mapper	445972.ANACOL_00518	Mu transposase, C-terminal	NA
UHGV-0109137_3	PADLOC	TnsB_0_V-K	TnsB_0_V-K	CRISPR-CAS
UHGV-0109137_3	Pfam	PF09039	Mu DNA binding, I gamma subdomain	HTH_Tnp_Mu_2
UHGV-0109137_3	Pfam	PF09299	Mu transposase, C-terminal	Mu-transpos_C
UHGV-0109137_3	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-0109137_3	Structural annotation	PF02914, PF09039, PF09299, PF21531, NF033594, TIGR01764, COG3316, COG3311	NA	NA
UHGV-0109137_4	KOfam	K02450	gspA; general secretion pathway protein A	NA
UHGV-0109137_4	PHROG	phrog_296	DNA transposition protein	integration and excision
UHGV-0109137_4	UniRef90	UniRef90_A0A1G4WQZ7	AAA domain-containing protein	NA
UHGV-0109137_4	eggNOG-mapper	1160721.RBI_II00554	AAA domain	NA
UHGV-0109137_4	Pfam	PF13401	AAA domain	AAA_22
UHGV-0109137_4	COG	COG2842	Bacteriophage DNA transposition protein, AAA+ family ATPase	NA
UHGV-0109137_4	Structural annotation	PF13401, MF_01407, TIGR03015, COG2842	NA	NA
UHGV-0109137_7	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0109137_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109137_7	UniRef90	UniRef90_A0A6I3PR21	Helix-turn-helix domain-containing protein	NA
UHGV-0109137_7	eggNOG-mapper	33035.JPJF01000051_gene822	NA	NA
UHGV-0109137_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109137_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0109137_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0109137_8	PHROG	phrog_5671	NA	unknown function
UHGV-0109137_8	eggNOG-mapper	293826.Amet_0399	NA	NA
UHGV-0109137_9	KOfam	K06284	abrB; AbrB family transcriptional regulator, transcriptional pleiotropic regulator of transition state genes	NA
UHGV-0109137_9	PHROG	phrog_4681	antitoxin from a toxin-antitoxin system	moron, auxiliary metabolic gene and host takeover
UHGV-0109137_9	UniRef90	UniRef90_A0A413QH66	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-0109137_9	eggNOG-mapper	411902.CLOBOL_06320	toxin-antitoxin pair type II binding	NA
UHGV-0109137_9	NCBIFam	TIGR01439.1	transcriptional regulator, AbrB family	NA
UHGV-0109137_9	COG	COG2002	Bifunctional DNA-binding transcriptional regulator of stationary/sporulation/toxin gene expression and antitoxin component of the YhaV-PrlF toxin-antitoxin module	NA
UHGV-0109137_9	Structural annotation	PF15937, TIGR01439, NF004424, COG2002	NA	NA
UHGV-0109137_10	eggNOG-mapper	742733.HMPREF9469_02889	NA	NA
UHGV-0109137_11	PHROG	phrog_286	NA	unknown function
UHGV-0109137_11	UniRef90	UniRef90_A0A373KYV3	NA	NA
UHGV-0109137_11	eggNOG-mapper	445972.ANACOL_00525	NA	NA
UHGV-0109137_11	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-0109137_11	Structural annotation	PF06252	NA	NA
UHGV-0109137_12	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-0109137_12	UniRef90	UniRef90_A0A373L0N7	Mor domain-containing protein	NA
UHGV-0109137_12	eggNOG-mapper	411483.FAEPRAA2165_03398	Mor transcription activator family	NA
UHGV-0109137_12	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-0109137_12	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-0109137_12	Structural annotation	PF08765, NF040785, COG5566	NA	NA
UHGV-0109137_13	PHROG	phrog_462	lipoprotein	other
UHGV-0109137_13	eggNOG-mapper	663278.Ethha_1583	NA	NA
UHGV-0109137_14	PHROG	phrog_25462	NA	unknown function
UHGV-0109137_14	UniRef90	UniRef90_A0A413QHC4	Type VI secretion protein	NA
UHGV-0109137_14	eggNOG-mapper	1160721.RBI_II00547	NA	NA
UHGV-0109137_14	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-0109137_15	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-0109137_15	UniRef90	UniRef90_A0A373L007	NA	NA
UHGV-0109137_15	eggNOG-mapper	742733.HMPREF9469_02884	NA	NA
UHGV-0109137_15	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-0109137_15	Structural annotation	PF11985	NA	NA
UHGV-0109137_16	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-0109137_16	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-0109137_16	UniRef90	UniRef90_A0A413QHD3	NGN domain-containing protein	NA
UHGV-0109137_16	eggNOG-mapper	97139.C824_03240	Transcription termination factor nusG	NA
UHGV-0109137_16	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-0109137_16	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-0109137_16	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-0109137_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0109137_18	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0109137_18	UniRef90	UniRef90_A0A373L0G3	PBSX family phage terminase large subunit	NA
UHGV-0109137_18	eggNOG-mapper	693746.OBV_18030	Phage terminase large subunit	NA
UHGV-0109137_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0109137_18	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0109137_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-0109137_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0109137_19	PHROG	phrog_533	portal protein	head and packaging
UHGV-0109137_19	UniRef90	UniRef90_A0A3D0XCF1	Phage capsid protein	NA
UHGV-0109137_19	eggNOG-mapper	545697.HMPREF0216_02845	NA	NA
UHGV-0109137_19	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0109137_19	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0109137_20	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0109137_20	UniRef90	UniRef90_A0A373KZU7	Capsid protein	NA
UHGV-0109137_20	eggNOG-mapper	641112.ACOK01000073_gene2890	NA	NA
UHGV-0109137_20	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0109137_20	COG	COG2369	NA	NA
UHGV-0109137_20	Structural annotation	PF06152, PF12636	NA	NA
UHGV-0109137_21	eggNOG-mapper	378806.STAUR_1524	NA	NA
UHGV-0109137_22	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0109137_22	UniRef90	UniRef90_A0A1G4WVL7	Phage minor structural protein GP20	NA
UHGV-0109137_22	eggNOG-mapper	1401067.HMPREF0872_00300	Phage minor structural protein GP20	NA
UHGV-0109137_22	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0109137_22	Structural annotation	PF06810	NA	NA
UHGV-0109137_23	PHROG	phrog_212	major head protein	head and packaging
UHGV-0109137_23	UniRef90	UniRef90_A0A373KYA5	Phage capsid protein	NA
UHGV-0109137_23	eggNOG-mapper	935836.JAEL01000021_gene1494	NA	NA
UHGV-0109137_24	PHROG	phrog_3366	NA	unknown function
UHGV-0109137_24	eggNOG-mapper	545697.HMPREF0216_02852	NA	NA
UHGV-0109137_24	Pfam	PF20536	NA	DUF6751
UHGV-0109137_25	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0109137_25	UniRef90	UniRef90_A0A413QH49	Capsid protein	NA
UHGV-0109137_25	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0109137_25	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0109137_25	Structural annotation	PF11114	NA	NA
UHGV-0109137_26	PHROG	phrog_3266	tail completion	connector
UHGV-0109137_26	UniRef90	UniRef90_A0A373KYC6	Chloramphenicol resistance protein	NA
UHGV-0109137_26	eggNOG-mapper	641112.ACOK01000073_gene2899	NA	NA
UHGV-0109137_26	Structural annotation	PF12691	NA	NA
UHGV-0109137_27	PHROG	phrog_3099	NA	unknown function
UHGV-0109137_27	UniRef90	UniRef90_T3DT99	S-l_SbsC_C domain-containing protein	NA
UHGV-0109137_27	eggNOG-mapper	411490.ANACAC_00772	NA	NA
UHGV-0109137_27	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0109137_28	PHROG	phrog_4450	NA	unknown function
UHGV-0109137_28	UniRef90	UniRef90_A0A413QHF8	AP endonuclease	NA
UHGV-0109137_28	eggNOG-mapper	536233.CLO_1573	NA	NA
UHGV-0109137_28	Pfam	PF20378	NA	DUF6673
UHGV-0109137_28	Structural annotation	PF20378	NA	NA
UHGV-0109137_29	PHROG	phrog_706	NA	unknown function
UHGV-0109137_29	UniRef90	UniRef90_A0A1G4WU45	Bacteriophage Gp15 protein	NA
UHGV-0109137_29	eggNOG-mapper	1499683.CCFF01000017_gene2567	Bacteriophage Gp15 protein	NA
UHGV-0109137_29	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0109137_29	Structural annotation	PF06854	NA	NA
UHGV-0109137_31	PHROG	phrog_19074	NA	unknown function
UHGV-0109137_31	UniRef90	UniRef90_A0A1G4WU66	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0109137_31	eggNOG-mapper	536233.CLO_2822	Phage tail tape measure protein, TP901 family	NA
UHGV-0109137_31	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0109137_31	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0109137_31	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0109137_31	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0109137_32	UniRef90	UniRef90_A0A1G4WVH7	Phage-related protein	NA
UHGV-0109137_32	COG	COG4722	Phage-related protein YomH	NA
UHGV-0109137_32	Structural annotation	PF20753, PF20195, TIGR01633, COG4722	NA	NA
UHGV-0109137_33	PHROG	phrog_18110	NA	unknown function
UHGV-0109137_33	UniRef90	UniRef90_A0A373KYA3	Prophage_tail domain-containing protein	NA
UHGV-0109137_33	eggNOG-mapper	1280689.AUJC01000007_gene3306	Phage minor structural protein	NA
UHGV-0109137_33	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0109137_33	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0109137_33	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0109137_33	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0109137_35	Pfam	PF21262	Exosome complex component RRP40, S1 domain	RRP40_S1
UHGV-0109137_35	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0109137_35	Structural annotation	PF10651, PF00541, NF040788	NA	NA
UHGV-0109137_37	KOfam	K07273	acm; lysozyme	NA
UHGV-0109137_37	PHROG	phrog_291	endolysin	lysis
UHGV-0109137_37	UniRef90	UniRef90_R6NXV5	Glycoside Hydrolase Family 25-like lysozyme/endolysin	NA
UHGV-0109137_37	eggNOG-mapper	657322.FPR_18260	hydrolase, family 25	NA
UHGV-0109137_37	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0109137_37	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0109137_37	Structural annotation	PF01183, TIGR04303, COG3757, COG5492	NA	NA
UHGV-0109137_38	PHROG	phrog_443	holin	lysis
UHGV-0109137_38	UniRef90	UniRef90_A0A4R1QPE5	Phage r1t holin	NA
UHGV-0109137_38	eggNOG-mapper	1469948.JPNB01000002_gene3855	Putative lactococcus lactis phage r1t holin	NA
UHGV-0109137_38	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0109137_38	Structural annotation	PF16945	NA	NA
UHGV-0109137_39	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0109137_39	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0109137_39	UniRef90	UniRef90_A0A1C6HHY1	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0109137_39	eggNOG-mapper	411902.CLOBOL_03426	COG COG0338 Site-specific DNA methylase	NA
UHGV-0109137_39	PADLOC	MTase_II_00080	Type II methyltransferase	RM
UHGV-0109137_39	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0109137_39	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0109137_39	COG	COG0338	DNA-adenine methylase	NA
UHGV-0109137_39	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0109137_40	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0109137_40	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0109137_40	UniRef90	UniRef90_A0A413QHG2	XRE family transcriptional regulator	NA
UHGV-0109137_40	eggNOG-mapper	411471.SUBVAR_07446	helix-turn-helix	NA
UHGV-0109137_40	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0109137_40	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0109137_40	Structural annotation	PF13443, NF041951, COG3655	NA	NA