UHGV-0109139

Genome information

Genome length 29,823 bps

CDS count 47

Completeness 79.09% (medium-quality)

geNomad score 0.9804

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109139
vOTU ID	vOTU-041867
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_236285
BioSample	SAMEA3708515
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.09% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9804
Virus hallmark genes (geNomad)	7
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.42
Jumbo phage	No

Genome content
Genome length	29,823 bps
GC content	49.12%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	92.73%
Average CDS length	590.68 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109139_2	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0109139_2	UniRef90	UniRef90_A0A350TXK3	ORF6N domain-containing protein	NA
UHGV-0109139_2	eggNOG-mapper	1499683.CCFF01000014_gene3566	Phage regulatory protein	NA
UHGV-0109139_2	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0109139_2	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0109139_2	Structural annotation	PF10543, PF15188, MF_01506, TIGR02681, COG3646	NA	NA
UHGV-0109139_4	PHROG	phrog_13890	NA	unknown function
UHGV-0109139_4	eggNOG-mapper	1232453.BAIF02000002_gene1276	NA	NA
UHGV-0109139_4	Structural annotation	PF10723, NF010256, COG4877	NA	NA
UHGV-0109139_5	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0109139_5	UniRef90	UniRef90_A0A0X8VCT6	NlpC/P60 domain-containing protein	NA
UHGV-0109139_5	eggNOG-mapper	411902.CLOBOL_04837	Phage lysozyme	NA
UHGV-0109139_5	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0109139_5	Structural annotation	PF00877, PF01471, NF033743, COG0791	NA	NA
UHGV-0109139_6	PHROG	phrog_36029	NA	unknown function
UHGV-0109139_6	UniRef90	UniRef90_A0A345BPS8	Holin of superfamily 6	NA
UHGV-0109139_6	eggNOG-mapper	411468.CLOSCI_01511	NA	NA
UHGV-0109139_8	PHROG	phrog_937	hemolysin	other
UHGV-0109139_8	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0109139_9	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0109139_9	UniRef90	UniRef90_A0A396NSB6	Prophage_tail domain-containing protein	NA
UHGV-0109139_9	eggNOG-mapper	1443125.Z962_07985	Prophage endopeptidase tail	NA
UHGV-0109139_9	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0109139_9	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0109139_9	COG	COG4926	Phage-related protein	NA
UHGV-0109139_9	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0109139_10	PHROG	phrog_2310	NA	unknown function
UHGV-0109139_10	eggNOG-mapper	1460635.JCM19038_2823	NA	NA
UHGV-0109139_12	PHROG	phrog_863	tail fiber assembly	tail
UHGV-0109139_12	UniRef90	UniRef90_A0A136WFR9	BppU_N domain-containing protein	NA
UHGV-0109139_12	eggNOG-mapper	1321778.HMPREF1982_03560	NA	NA
UHGV-0109139_12	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0109139_12	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0109139_12	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-0109139_12	Structural annotation	PF10651, PF21722, NF032891, COG2372	NA	NA
UHGV-0109139_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0109139_13	UniRef90	UniRef90_R5ADI0	Putative phage tail component	NA
UHGV-0109139_13	eggNOG-mapper	545697.HMPREF0216_00910	tail component	NA
UHGV-0109139_13	COG	COG4722	Phage-related protein YomH	NA
UHGV-0109139_13	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0109139_14	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0109139_14	eggNOG-mapper	536233.CLO_1577	tape measure	NA
UHGV-0109139_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0109139_15	PHROG	phrog_706	NA	unknown function
UHGV-0109139_15	UniRef90	UniRef90_UPI001D122605	bacteriophage Gp15 family protein	NA
UHGV-0109139_15	eggNOG-mapper	1151292.QEW_4528	Bacteriophage Gp15 protein	NA
UHGV-0109139_15	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0109139_15	Structural annotation	PF06854	NA	NA
UHGV-0109139_16	Structural annotation	PF20378	NA	NA
UHGV-0109139_17	PHROG	phrog_3099	NA	unknown function
UHGV-0109139_17	UniRef90	UniRef90_A0A0A8WE72	S-l_SbsC_C domain-containing protein	NA
UHGV-0109139_17	eggNOG-mapper	903814.ELI_3202	NA	NA
UHGV-0109139_17	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0109139_18	PHROG	phrog_3266	tail completion	connector
UHGV-0109139_18	UniRef90	UniRef90_A0A353IZQ8	Chloramphenicol resistance protein	NA
UHGV-0109139_18	eggNOG-mapper	1280692.AUJL01000004_gene841	NA	NA
UHGV-0109139_18	Structural annotation	PF12691	NA	NA
UHGV-0109139_19	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0109139_19	UniRef90	UniRef90_UPI000F63A4E5	minor capsid protein	NA
UHGV-0109139_19	eggNOG-mapper	903814.ELI_3205	Minor capsid protein	NA
UHGV-0109139_19	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0109139_19	Structural annotation	PF11114	NA	NA
UHGV-0109139_20	PHROG	phrog_3366	NA	unknown function
UHGV-0109139_20	Pfam	PF20536	NA	DUF6751
UHGV-0109139_20	Structural annotation	PF20536, COG1853	NA	NA
UHGV-0109139_21	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0109139_21	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-0109139_23	PHROG	phrog_422	major head protein	head and packaging
UHGV-0109139_23	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0109139_23	eggNOG-mapper	1160721.RBI_II00538	NA	NA
UHGV-0109139_23	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0109139_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0109139_24	UniRef90	UniRef90_UPI00189B4BB3	phage scaffolding protein	NA
UHGV-0109139_26	Structural annotation	PF11344	NA	NA
UHGV-0109139_27	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0109139_27	UniRef90	UniRef90_R5AIZ3	Minor capsid 2 protein	NA
UHGV-0109139_27	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0109139_27	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0109139_27	COG	COG2369	NA	NA
UHGV-0109139_27	Structural annotation	PF06152	NA	NA
UHGV-0109139_28	PHROG	phrog_533	portal protein	head and packaging
UHGV-0109139_28	UniRef90	UniRef90_R5ADJ4	Phage minor capsid protein	NA
UHGV-0109139_28	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-0109139_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0109139_28	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0109139_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0109139_29	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0109139_29	UniRef90	UniRef90_A0A396NWZ4	PBSX family phage terminase large subunit	NA
UHGV-0109139_29	eggNOG-mapper	536233.CLO_0881	Phage terminase, large subunit, PBSX family	NA
UHGV-0109139_29	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0109139_29	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0109139_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0109139_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0109139_29	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0109139_30	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0109139_30	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0109139_30	UniRef90	UniRef90_A0A396NMY4	Terminase small subunit	NA
UHGV-0109139_30	eggNOG-mapper	476272.RUMHYD_01754	Terminase small subunit	NA
UHGV-0109139_30	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0109139_30	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0109139_30	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0109139_31	Structural annotation	PF10922, MF_00839	NA	NA
UHGV-0109139_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0109139_32	UniRef90	UniRef90_A0A416N3D8	NA	NA
UHGV-0109139_32	eggNOG-mapper	1235799.C818_04213	sigma factor activity	NA
UHGV-0109139_32	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0109139_32	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0109139_33	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0109139_33	UniRef90	UniRef90_A0A1I0VIB3	MazG nucleotide pyrophosphohydrolase domain-containing protein	NA
UHGV-0109139_33	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0109139_34	Structural annotation	NF007260	NA	NA
UHGV-0109139_36	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0109139_37	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0109139_38	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0109139_38	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0109139_38	UniRef90	UniRef90_A0A396NP54	DNA adenine methylase	NA
UHGV-0109139_38	eggNOG-mapper	1235802.C823_01030	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0109139_38	PADLOC	MTase_II_00030	Type II methyltransferase	RM
UHGV-0109139_38	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0109139_38	COG	COG0338	DNA-adenine methylase	NA
UHGV-0109139_38	Structural annotation	PF02086, MF_01872, NF008152, COG0338	NA	NA
UHGV-0109139_39	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0109139_39	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0109139_39	UniRef90	UniRef90_A0A352UR43	Single-stranded DNA-binding protein	NA
UHGV-0109139_39	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-0109139_39	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0109139_39	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0109139_39	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0109139_39	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0109139_39	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0109139_41	PHROG	phrog_7566	NA	unknown function
UHGV-0109139_41	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0109139_42	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0109139_42	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0109139_42	eggNOG-mapper	318464.IO99_13830	NA	NA
UHGV-0109139_42	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0109139_44	PHROG	phrog_15609	NA	unknown function
UHGV-0109139_44	UniRef90	UniRef90_UPI001875FF23	NA	NA
UHGV-0109139_44	eggNOG-mapper	1007096.BAGW01000031_gene118	NA	NA
UHGV-0109139_44	Pfam	PF11300	NA	DUF3102
UHGV-0109139_44	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0109139_44	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0109139_45	PHROG	phrog_8470	NA	unknown function
UHGV-0109139_45	UniRef90	UniRef90_UPI001875A728	PcfJ domain-containing protein	NA
UHGV-0109139_45	eggNOG-mapper	1157490.EL26_01845	PcfJ-like protein	NA
UHGV-0109139_45	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0109139_45	Structural annotation	PF14284	NA	NA
UHGV-0109139_46	PHROG	phrog_7445	NA	unknown function
UHGV-0109139_46	UniRef90	UniRef90_UPI000FD875FF	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0109139_46	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0109139_46	Structural annotation	PF14058	NA	NA
UHGV-0109139_47	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0109139_47	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0109139_47	UniRef90	UniRef90_A0A350TVJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0109139_47	eggNOG-mapper	457415.HMPREF1006_02520	Helix-turn-helix XRE-family like proteins	NA
UHGV-0109139_47	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109139_47	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA