UHGV-0109205

Genome information

Genome length 38,583 bps

CDS count 67

Completeness 91.27% (high-quality)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109205
vOTU ID	vOTU-070236
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_257303
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	91.27% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	38.04
Jumbo phage	No

Genome content
Genome length	38,583 bps
GC content	53.58%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	90.42%
Average CDS length	523.57 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109205_2	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0109205_2	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0109205_2	UniRef90	UniRef90_A0A6N7TLD1	Phage antirepressor Ant	NA
UHGV-0109205_2	eggNOG-mapper	1051631.F8HGQ0_9CAUD	DNA binding	NA
UHGV-0109205_2	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0109205_2	Structural annotation	PF03374, COG3645, COG3561	NA	NA
UHGV-0109205_3	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0109205_3	PHROG	phrog_6904	NA	unknown function
UHGV-0109205_3	UniRef90	UniRef90_A0A5T0UIT4	AntA domain-containing protein (Fragment)	NA
UHGV-0109205_3	eggNOG-mapper	1230342.CTM_17202	Phage antirepressor protein KilAC domain	NA
UHGV-0109205_3	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0109205_3	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0109205_6	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0109205_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109205_6	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0109205_6	eggNOG-mapper	1268072.PSAB_01325	Transcriptional regulator	NA
UHGV-0109205_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109205_6	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0109205_6	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0109205_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109205_7	UniRef90	UniRef90_UPI001C020D87	helix-turn-helix domain-containing protein	NA
UHGV-0109205_7	eggNOG-mapper	198094.BA_3829	Helix-turn-helix XRE-family like proteins	NA
UHGV-0109205_7	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0109205_8	Structural annotation	PF21715, NF008122, COG1846	NA	NA
UHGV-0109205_12	PHROG	phrog_888	NA	unknown function
UHGV-0109205_12	UniRef90	UniRef90_A0A6N7TMA2	SHOCT domain-containing protein	NA
UHGV-0109205_12	eggNOG-mapper	1415774.U728_165	Short C-terminal domain	NA
UHGV-0109205_12	Pfam	PF14471	NA	DUF4428
UHGV-0109205_12	Pfam	PF09851	Short C-terminal domain	SHOCT
UHGV-0109205_12	Structural annotation	PF15947, PF14471	NA	NA
UHGV-0109205_14	UniRef90	UniRef90_A0A6N7TLT0	Helix-turn-helix domain-containing protein	NA
UHGV-0109205_14	eggNOG-mapper	266265.Bxe_A3948	Helix-turn-helix domain	NA
UHGV-0109205_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109205_14	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109205_14	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0109205_15	KOfam	K14059	int; integrase	NA
UHGV-0109205_15	PHROG	phrog_1	integrase	integration and excision
UHGV-0109205_15	UniRef90	UniRef90_A0A174D176	Tyrosine recombinase XerD	NA
UHGV-0109205_15	eggNOG-mapper	411471.SUBVAR_05137	Belongs to the 'phage' integrase family	NA
UHGV-0109205_15	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0109205_15	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0109205_15	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0109205_17	Structural annotation	PF12510	NA	NA
UHGV-0109205_18	PHROG	phrog_20016	NA	unknown function
UHGV-0109205_18	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0109205_18	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0109205_18	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0109205_19	PHROG	phrog_16490	NA	unknown function
UHGV-0109205_19	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0109205_20	PHROG	phrog_22984	NA	unknown function
UHGV-0109205_21	PHROG	phrog_21718	NA	unknown function
UHGV-0109205_21	eggNOG-mapper	397290.C810_05210	NA	NA
UHGV-0109205_22	PHROG	phrog_3754	NA	unknown function
UHGV-0109205_22	eggNOG-mapper	1235790.C805_00054	NA	NA
UHGV-0109205_24	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0109205_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109205_24	Structural annotation	PF13560, NF040522	NA	NA
UHGV-0109205_26	PHROG	phrog_5765	NA	unknown function
UHGV-0109205_26	UniRef90	UniRef90_UPI001D0EF465	BC1881 family protein	NA
UHGV-0109205_26	eggNOG-mapper	748727.CLJU_c31430	NA	NA
UHGV-0109205_26	NCBIFam	NF033495.1	BC1881 family protein	NA
UHGV-0109205_30	eggNOG-mapper	411483.FAEPRAA2165_00757	NA	NA
UHGV-0109205_30	Structural annotation	PF10651, PF00544, NF041899, COG4677	NA	NA
UHGV-0109205_31	PHROG	phrog_15303	NA	unknown function
UHGV-0109205_31	Pfam	PF09682	Bacteriophage holin of superfamily 6 (Holin_LLH)	Phage_holin_6_1
UHGV-0109205_33	KOfam	K07273	acm; lysozyme	NA
UHGV-0109205_33	PHROG	phrog_291	endolysin	lysis
UHGV-0109205_33	UniRef90	UniRef90_A0A564U0D3	Autolytic lysozyme	NA
UHGV-0109205_33	eggNOG-mapper	718252.FP2_04890	hydrolase, family 25	NA
UHGV-0109205_33	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0109205_33	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0109205_33	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0109205_34	PHROG	phrog_1382	NA	unknown function
UHGV-0109205_34	eggNOG-mapper	411468.CLOSCI_00272	NA	NA
UHGV-0109205_36	PHROG	phrog_9534	head protein	head and packaging
UHGV-0109205_36	eggNOG-mapper	748224.HMPREF9436_00702	COG NOG18825 non supervised orthologous group	NA
UHGV-0109205_37	PHROG	phrog_3558	tail protein	tail
UHGV-0109205_37	eggNOG-mapper	610130.Closa_0754	NA	NA
UHGV-0109205_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0109205_37	COG	COG4926	Phage-related protein	NA
UHGV-0109205_37	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0109205_38	UniRef90	UniRef90_A0A417QGC1	MtfA protein	NA
UHGV-0109205_38	eggNOG-mapper	1235792.C808_00094	phage tail	NA
UHGV-0109205_38	COG	COG4722	Phage-related protein YomH	NA
UHGV-0109205_38	Structural annotation	PF05709, PF02408, TIGR01633, COG4722	NA	NA
UHGV-0109205_39	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0109205_39	UniRef90	UniRef90_A0A6N7TLD3	Tape measure protein	NA
UHGV-0109205_39	eggNOG-mapper	1492737.FEM08_12070	tape measure	NA
UHGV-0109205_39	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0109205_39	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0109205_39	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0109205_39	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0109205_42	PHROG	phrog_885	major tail protein	tail
UHGV-0109205_42	eggNOG-mapper	1111121.HMPREF1247_0789	NA	NA
UHGV-0109205_42	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0109205_43	Structural annotation	PF13554	NA	NA
UHGV-0109205_44	PHROG	phrog_17977	NA	unknown function
UHGV-0109205_44	UniRef90	UniRef90_A0A844DHJ8	Phage head closure protein	NA
UHGV-0109205_44	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0109205_46	PHROG	phrog_544	major head protein	head and packaging
UHGV-0109205_46	UniRef90	UniRef90_R0BKA1	S-l_SbsC_C domain-containing protein	NA
UHGV-0109205_46	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0109205_46	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0109205_47	Structural annotation	PF06810	NA	NA
UHGV-0109205_48	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0109205_48	UniRef90	UniRef90_A0A373Q857	YopX domain-containing protein	NA
UHGV-0109205_48	eggNOG-mapper	1111121.HMPREF1247_0834	NA	NA
UHGV-0109205_51	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0109205_51	UniRef90	UniRef90_A0A6N7TNP6	HK97 gp10 family phage protein	NA
UHGV-0109205_51	eggNOG-mapper	1123309.AQYB01000018_gene814	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0109205_51	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0109205_51	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0109205_53	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0109205_53	UniRef90	UniRef90_A0A6N7TLR7	Phage_Mu_F domain-containing protein	NA
UHGV-0109205_53	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0109205_53	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0109205_53	COG	COG2369	NA	NA
UHGV-0109205_53	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0109205_54	PHROG	phrog_64	portal protein	head and packaging
UHGV-0109205_54	UniRef90	UniRef90_A0A6N7TNT3	Phage portal protein	NA
UHGV-0109205_54	eggNOG-mapper	642492.Clole_2764	phage portal protein, SPP1	NA
UHGV-0109205_54	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0109205_54	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0109205_55	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0109205_55	PHROG	phrog_10250	NA	unknown function
UHGV-0109205_55	UniRef90	UniRef90_A0A844D8I4	PBSX family phage terminase large subunit	NA
UHGV-0109205_55	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0109205_55	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0109205_55	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0109205_55	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0109205_55	COG	COG1783	Phage terminase large subunit	NA
UHGV-0109205_55	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0109205_56	UniRef90	UniRef90_UPI0018CC2891	helix-turn-helix domain-containing protein	NA
UHGV-0109205_56	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0109205_56	Structural annotation	PF04218	NA	NA
UHGV-0109205_57	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0109205_57	UniRef90	UniRef90_A0A6N7TNN9	NA	NA
UHGV-0109205_57	Structural annotation	PF07374	NA	NA
UHGV-0109205_58	UniRef90	UniRef90_A0A845R8R0	NA	NA
UHGV-0109205_59	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0109205_59	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0109205_59	UniRef90	UniRef90_A0A6N7TND6	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0109205_59	eggNOG-mapper	875454.BAEW01000002_gene491	Endodeoxyribonuclease RusA	NA
UHGV-0109205_59	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0109205_59	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0109205_59	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0109205_60	PHROG	phrog_7711	NA	unknown function
UHGV-0109205_60	eggNOG-mapper	1304866.K413DRAFT_1204	NA	NA
UHGV-0109205_62	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0109205_62	UniRef90	UniRef90_A0A417JTT5	DNA cytosine methyltransferase	NA
UHGV-0109205_62	eggNOG-mapper	1095750.HMPREF9970_0173	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0109205_62	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0109205_65	Structural annotation	PF11417	NA	NA
UHGV-0109205_66	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0109205_66	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0109205_66	UniRef90	UniRef90_A0A564U6B4	Replication initiation and membrane attachment	NA
UHGV-0109205_66	eggNOG-mapper	718252.FP2_01000	NA	NA
UHGV-0109205_66	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0109205_66	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0109205_66	COG	COG3935	DNA replication protein DnaD	NA