UHGV-0109236

Genome information

vOTU vOTU-020805

Genome length 43,641 bps

CDS count 65

Completeness 82.35% (medium-quality)

geNomad score 0.9636

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109236
vOTU ID	vOTU-020805
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_256639
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	82.35% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9636
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	53.43
Jumbo phage	No

Genome content
Genome length	43,641 bps
GC content	50.65%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	65
CDS density	82.79%
Average CDS length	558.32 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109236_2	PHROG	phrog_15698	NA	unknown function
UHGV-0109236_2	UniRef90	UniRef90_A0A4Q8L5C4	Type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0109236_2	eggNOG-mapper	1380380.JIAX01000012_gene616	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0109236_2	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0109236_2	COG	COG3692	NA	NA
UHGV-0109236_2	Structural annotation	PF02452, NF007386, COG3692	NA	NA
UHGV-0109236_3	Structural annotation	PF01381, NF041677, COG1476	NA	NA
UHGV-0109236_4	KOfam	K05793	terB; tellurite resistance protein TerB	NA
UHGV-0109236_4	PHROG	phrog_632	tellurite resistance	moron, auxiliary metabolic gene and host takeover
UHGV-0109236_4	UniRef90	UniRef90_E5Y9L0	TerB domain-containing protein	NA
UHGV-0109236_4	eggNOG-mapper	563192.HMPREF0179_02925	PFAM Mo-dependent nitrogenase	NA
UHGV-0109236_4	Pfam	PF05099	Tellurite resistance protein TerB	TerB
UHGV-0109236_4	COG	COG3793	Tellurite resistance protein TerB	NA
UHGV-0109236_4	Structural annotation	PF05099, MF_01153, NF006948, COG3793	NA	NA
UHGV-0109236_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0109236_6	UniRef90	UniRef90_UPI00138E35B1	LacI family DNA-binding transcriptional regulator	NA
UHGV-0109236_6	Structural annotation	PF13560, NF040507, COG3655	NA	NA
UHGV-0109236_7	Structural annotation	PF20800	NA	NA
UHGV-0109236_11	PHROG	phrog_345	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0109236_11	eggNOG-mapper	457398.HMPREF0326_01460	HNH endonuclease	NA
UHGV-0109236_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0109236_12	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0109236_12	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0109236_12	UniRef90	UniRef90_UPI000691721C	AAA family ATPase	NA
UHGV-0109236_12	eggNOG-mapper	1408428.JNJP01000012_gene1100	it exhibits DNA-dependent ATPase activity and contains distinct active sites for ATP binding, DNA binding, and interaction with DnaC protein, primase, and other prepriming proteins	NA
UHGV-0109236_12	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0109236_12	COG	COG0305	Replicative DNA helicase	NA
UHGV-0109236_12	Structural annotation	PF03796, PF00772, MF_04155, NF006443, COG0305	NA	NA
UHGV-0109236_17	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0109236_17	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0109236_17	UniRef90	UniRef90_E5Y9R0	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0109236_17	eggNOG-mapper	563192.HMPREF0179_02928	Endodeoxyribonuclease RusA	NA
UHGV-0109236_17	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0109236_17	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0109236_17	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0109236_18	Structural annotation	NF033499	NA	NA
UHGV-0109236_20	PHROG	phrog_801	endolysin; inhibits RNA polymerase	lysis
UHGV-0109236_20	UniRef90	UniRef90_A0A7X8EV86	NA	NA
UHGV-0109236_20	eggNOG-mapper	881915.E1Y3U1_9CAUD	Cytidine and deoxycytidylate deaminase zinc-binding region	NA
UHGV-0109236_20	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0109236_21	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0109236_21	PHROG	phrog_894	endolysin	lysis
UHGV-0109236_21	UniRef90	UniRef90_S2KWS0	Peptidase_M15_3 domain-containing protein	NA
UHGV-0109236_21	eggNOG-mapper	563192.HMPREF0179_05268	Peptidase M15	NA
UHGV-0109236_21	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0109236_21	COG	COG3108	NA	NA
UHGV-0109236_21	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0109236_25	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0109236_25	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0109236_25	UniRef90	UniRef90_UPI0019616CA6	terminase small subunit	NA
UHGV-0109236_25	eggNOG-mapper	926549.KI421517_gene1289	DNA packaging	NA
UHGV-0109236_25	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0109236_25	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0109236_25	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0109236_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0109236_26	PHROG	phrog_38319	NA	unknown function
UHGV-0109236_26	UniRef90	UniRef90_A0A1H9PT75	Terminase-like family protein	NA
UHGV-0109236_26	eggNOG-mapper	205918.Psyr_2794	Terminase RNaseH-like domain	NA
UHGV-0109236_26	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0109236_26	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0109236_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0109236_26	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG5323	NA	NA
UHGV-0109236_27	PHROG	phrog_145	portal protein	head and packaging
UHGV-0109236_27	UniRef90	UniRef90_A0A846QGU6	NA	NA
UHGV-0109236_27	eggNOG-mapper	1304872.JAGC01000009_gene769	NA	NA
UHGV-0109236_27	Pfam	PF13264	NA	DUF4055
UHGV-0109236_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG4383	NA	NA
UHGV-0109236_28	PHROG	phrog_241	head morphogenesis	head and packaging
UHGV-0109236_28	UniRef90	UniRef90_E5Y9S3	SPP1 gp7 family phage head morphogenesis protein	NA
UHGV-0109236_28	eggNOG-mapper	563192.HMPREF0179_02941	Phage Mu protein F like protein	NA
UHGV-0109236_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0109236_28	COG	COG2369	NA	NA
UHGV-0109236_28	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0109236_30	UniRef90	UniRef90_G1UNI7	HNHc domain-containing protein	NA
UHGV-0109236_30	eggNOG-mapper	665942.HMPREF1022_00160	HNH nucleases	NA
UHGV-0109236_30	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0109236_31	PHROG	phrog_784	NA	unknown function
UHGV-0109236_31	UniRef90	UniRef90_UPI00140725C8	GPO family capsid scaffolding protein	NA
UHGV-0109236_31	eggNOG-mapper	398578.Daci_3240	NA	NA
UHGV-0109236_31	Pfam	PF20356	NA	DUF6651
UHGV-0109236_31	Structural annotation	PF20356	NA	NA
UHGV-0109236_32	PHROG	phrog_283	major head protein	head and packaging
UHGV-0109236_32	UniRef90	UniRef90_A0A0T9TZG0	p22 coat protein-gene protein 5	NA
UHGV-0109236_32	eggNOG-mapper	1205683.CAKR01000002_gene2801	P22 coat protein - gene protein 5	NA
UHGV-0109236_32	Pfam	PF11651	P22 coat protein - gene protein 5	P22_CoatProtein
UHGV-0109236_32	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0109236_34	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0109236_34	UniRef90	UniRef90_A0A7D4XWE0	Structural protein	NA
UHGV-0109236_34	eggNOG-mapper	563192.HMPREF0179_02946	NA	NA
UHGV-0109236_34	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0109236_34	Structural annotation	PF20557	NA	NA
UHGV-0109236_35	PHROG	phrog_161	head closure Hc1	connector
UHGV-0109236_35	eggNOG-mapper	1304872.JAGC01000009_gene756	NA	NA
UHGV-0109236_35	Structural annotation	PF11649, TIGR01563, COG5614	NA	NA
UHGV-0109236_36	PHROG	phrog_169	tail completion or Neck1 protein	connector
UHGV-0109236_36	eggNOG-mapper	292414.TM1040_0810	NA	NA
UHGV-0109236_37	Structural annotation	PF13554, COG5003	NA	NA
UHGV-0109236_38	eggNOG-mapper	563192.HMPREF0179_02948	NA	NA
UHGV-0109236_39	Structural annotation	PF08748	NA	NA
UHGV-0109236_48	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0109236_48	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0109236_48	UniRef90	UniRef90_E5Y9T7	Anti-repressor protein	NA
UHGV-0109236_48	eggNOG-mapper	563192.HMPREF0179_02955	BRO family, N-terminal domain	NA
UHGV-0109236_48	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0109236_48	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0109236_48	COG	COG3617	Prophage antirepressor	NA
UHGV-0109236_48	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-0109236_49	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0109236_50	PHROG	phrog_6160	NA	unknown function
UHGV-0109236_50	UniRef90	UniRef90_A0A2N5MZN8	FinQ	NA
UHGV-0109236_50	eggNOG-mapper	411464.DESPIG_00769	NA	NA
UHGV-0109236_53	UniRef90	UniRef90_S2LBH7	RHH_1 domain-containing protein	NA
UHGV-0109236_53	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0109236_55	UniRef90	UniRef90_A0A0X8JHZ4	Peptidase M23	NA
UHGV-0109236_55	eggNOG-mapper	563192.HMPREF0179_03277	NA	NA
UHGV-0109236_56	UniRef90	UniRef90_UPI0006901CBD	Rha family transcriptional regulator	NA
UHGV-0109236_56	eggNOG-mapper	1408428.JNJP01000049_gene2704	NA	NA
UHGV-0109236_56	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0109236_57	PHROG	phrog_2127	anti-repressor	transcription regulation
UHGV-0109236_57	UniRef90	UniRef90_E5Y9U4	Bro-N domain-containing protein	NA
UHGV-0109236_57	eggNOG-mapper	563192.HMPREF0179_02962	ORF6C domain	NA
UHGV-0109236_57	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0109236_57	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0109236_57	COG	COG3617	Prophage antirepressor	NA
UHGV-0109236_58	COG	COG2369	NA	NA
UHGV-0109236_59	PHROG	phrog_9201	NA	unknown function
UHGV-0109236_60	PHROG	phrog_2335	tail length tape measure protein	tail
UHGV-0109236_60	UniRef90	UniRef90_UPI001D08E8FB	tape measure protein	NA
UHGV-0109236_60	eggNOG-mapper	883.DvMF_1643	tape measure	NA
UHGV-0109236_60	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0109236_60	Pfam	PF09718	Lambda phage tail tape-measure protein (Tape_meas_lam_C)	Tape_meas_lam_C
UHGV-0109236_60	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0109236_60	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0109236_60	Structural annotation	PF06791, MF_04138, COG5281	NA	NA
UHGV-0109236_61	PHROG	phrog_396	minor tail protein	tail
UHGV-0109236_61	UniRef90	UniRef90_UPI0001E12A6F	NA	NA
UHGV-0109236_61	eggNOG-mapper	457398.HMPREF0326_01518	NA	NA
UHGV-0109236_61	Pfam	PF08875	NA	DUF1833
UHGV-0109236_61	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0109236_62	UniRef90	UniRef90_A0A2E3P537	NlpC/P60 domain-containing protein	NA
UHGV-0109236_62	eggNOG-mapper	1000565.METUNv1_01676	to Bacteriophage D3 Orf25 SWALL Q9MC96 (EMBL AF165214) (135 aa) fasta scores E() 0.00047, 30.46 id in 128 aa	NA
UHGV-0109236_62	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0109236_63	PHROG	phrog_469	tail protein	tail
UHGV-0109236_63	UniRef90	UniRef90_A0A212IXH8	Phage-tail_3 domain-containing protein	NA
UHGV-0109236_63	eggNOG-mapper	457398.HMPREF0326_01516	Phage-related protein, tail	NA
UHGV-0109236_63	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0109236_63	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0109236_63	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0109236_64	PHROG	phrog_384	virion structural protein	head and packaging
UHGV-0109236_64	UniRef90	UniRef90_W5IYD6	Membrane protein	NA
UHGV-0109236_64	eggNOG-mapper	95619.PM1_0217840	NA	NA
UHGV-0109236_65	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-0109236_65	COG	COG5434	Polygalacturonase	NA