UHGV-0109298

Genome information

vOTU vOTU-041922

Genome length 16,349 bps

CDS count 24

Completeness 72.22% (medium-quality)

geNomad score 0.9746

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109298
vOTU ID	vOTU-041922
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_249135
BioSample	SAMEA3708778
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.22% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	8
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9746
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	27.15
Jumbo phage	No

Genome content
Genome length	16,349 bps
GC content	31.78%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	24
CDS density	89.27%
Average CDS length	609.38 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109298_3	Structural annotation	TIGR02436	NA	NA
UHGV-0109298_5	PHROG	phrog_2150	terminase	head and packaging
UHGV-0109298_5	UniRef90	UniRef90_UPI0009B42C61	phage DNA encapsidation protein	NA
UHGV-0109298_5	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0109298_5	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0109298_5	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0109298_6	UniRef90	UniRef90_UPI001E3A3AD5	SH3 domain-containing protein	NA
UHGV-0109298_6	eggNOG-mapper	1214184.ALKY01000039_gene902	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0109298_6	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0109298_7	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0109298_7	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0109298_8	PHROG	phrog_2038	upper collar connector	connector
UHGV-0109298_8	UniRef90	UniRef90_Q37891	Portal protein	NA
UHGV-0109298_8	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0109298_8	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0109298_8	Structural annotation	PF05352, MF_04135, TIGR01538, COG4695	NA	NA
UHGV-0109298_9	PHROG	phrog_2248	tail protein	tail
UHGV-0109298_9	UniRef90	UniRef90_A0A843HAY7	Caud_tail_N domain-containing protein	NA
UHGV-0109298_9	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0109298_9	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0109298_9	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0109298_9	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0109298_10	PHROG	phrog_11037	NA	unknown function
UHGV-0109298_10	UniRef90	UniRef90_R9LPC0	Phage_lysozyme2 domain-containing protein (Fragment)	NA
UHGV-0109298_10	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-0109298_10	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0109298_10	COG	COG3942	Surface antigen	NA
UHGV-0109298_10	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0109298_14	PHROG	phrog_199	holin	lysis
UHGV-0109298_14	UniRef90	UniRef90_UPI001C109117	phage holin family protein	NA
UHGV-0109298_14	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0109298_14	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0109298_14	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0109298_15	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0109298_15	UniRef90	UniRef90_Q37888	Major capsid protein	NA
UHGV-0109298_15	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0109298_15	Structural annotation	PF19821, PF18957, MF_04119, TIGR04387, NF038186, COG4834	NA	NA
UHGV-0109298_16	Pfam	PF11418	Phi29 scaffolding protein	Scaffolding_pro
UHGV-0109298_20	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0109298_20	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0109298_20	UniRef90	UniRef90_B7SSM2	DNA polymerase	NA
UHGV-0109298_20	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0109298_20	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0109298_20	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0109298_21	Structural annotation	PF05435	NA	NA
UHGV-0109298_22	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0109298_22	eggNOG-mapper	513550.B6RT34_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-0109298_22	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0109298_22	Structural annotation	PF17427	NA	NA