UHGV-0109316

Genome information

Genome length 29,746 bps

CDS count 48

Completeness 93.78% (high-quality)

geNomad score 0.9792

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109316
vOTU ID	vOTU-061057
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_256025
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.78% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9792
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.21
Jumbo phage	No

Genome content
Genome length	29,746 bps
GC content	53.67%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	48
CDS density	91.74%
Average CDS length	572.44 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109316_1	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0109316_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109316_1	UniRef90	UniRef90_A0A2V2GQ57	HNH endonuclease	NA
UHGV-0109316_1	eggNOG-mapper	649747.HMPREF0083_01016	HNH nucleases	NA
UHGV-0109316_1	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0109316_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0109316_1	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0109316_3	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0109316_3	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0109316_5	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0109316_5	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0109316_5	UniRef90	UniRef90_UPI001915D0A5	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0109316_5	eggNOG-mapper	545697.HMPREF0216_02819	Endodeoxyribonuclease RusA	NA
UHGV-0109316_5	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0109316_5	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0109316_5	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0109316_6	PHROG	phrog_2149	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0109316_6	eggNOG-mapper	1095750.HMPREF9970_1674	NA	NA
UHGV-0109316_6	Structural annotation	PF01978, NF000243, COG0735	NA	NA
UHGV-0109316_7	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0109316_7	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0109316_7	UniRef90	UniRef90_A0A316T9K6	Single-stranded DNA-binding protein	NA
UHGV-0109316_7	eggNOG-mapper	537013.CLOSTMETH_00062	Single-stranded DNA-binding protein	NA
UHGV-0109316_7	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0109316_7	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0109316_7	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0109316_7	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0109316_7	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0109316_8	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0109316_17	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0109316_17	UniRef90	UniRef90_A0A1C5RLF4	Conjugal transfer protein TrbA	NA
UHGV-0109316_17	eggNOG-mapper	1122947.FR7_2493	Helix-turn-helix XRE-family like proteins	NA
UHGV-0109316_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109316_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109316_17	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0109316_20	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109316_20	UniRef90	UniRef90_A0A1C6ARB1	Helix-turn-helix domain	NA
UHGV-0109316_20	eggNOG-mapper	1226322.HMPREF1545_02466	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0109316_20	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0109316_20	Structural annotation	PF12844, MF_00535, NF041951, COG3655	NA	NA
UHGV-0109316_23	UniRef90	UniRef90_R6R313	NA	NA
UHGV-0109316_23	eggNOG-mapper	1430331.EP10_02425	NA	NA
UHGV-0109316_23	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0109316_24	UniRef90	UniRef90_UPI001D0C67E8	helix-turn-helix transcriptional regulator	NA
UHGV-0109316_24	eggNOG-mapper	999413.HMPREF1094_00245	Peptidase S24-like	NA
UHGV-0109316_24	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0109316_24	Structural annotation	PF13560, MF_00535, NF041951, COG1396	NA	NA
UHGV-0109316_25	PHROG	phrog_1914	NA	unknown function
UHGV-0109316_25	UniRef90	UniRef90_R6DVV5	Predicted Zn peptidase	NA
UHGV-0109316_25	eggNOG-mapper	1160721.RBI_I01604	NA	NA
UHGV-0109316_25	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0109316_25	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0109316_25	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0109316_27	KOfam	K14059	int; integrase	NA
UHGV-0109316_27	PHROG	phrog_1	integrase	integration and excision
UHGV-0109316_27	UniRef90	UniRef90_UPI0019585560	site-specific integrase	NA
UHGV-0109316_27	eggNOG-mapper	1408437.JNJN01000039_gene380	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0109316_27	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0109316_27	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0109316_27	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0109316_27	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0109316_30	PHROG	phrog_25567	NA	unknown function
UHGV-0109316_30	eggNOG-mapper	1235798.C817_04600	NA	NA
UHGV-0109316_30	Structural annotation	NF040522, COG2944	NA	NA
UHGV-0109316_32	PHROG	phrog_199	holin	lysis
UHGV-0109316_32	UniRef90	UniRef90_UPI00156D4996	phage holin family protein	NA
UHGV-0109316_32	eggNOG-mapper	1160721.RBI_I01565	Bacteriophage holin family	NA
UHGV-0109316_32	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0109316_32	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0109316_32	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0109316_32	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0109316_33	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0109316_33	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0109316_33	UniRef90	UniRef90_A0A0Q8R129	Peptidase M23	NA
UHGV-0109316_33	eggNOG-mapper	517722.AEUE01000001_gene2537	COG0739 Membrane proteins related to metalloendopeptidases	NA
UHGV-0109316_33	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0109316_33	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0109316_34	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0109316_34	UniRef90	UniRef90_A0A316NPB5	Peptidase S74 domain-containing protein	NA
UHGV-0109316_34	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0109316_34	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0109316_34	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0109316_34	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0109316_34	COG	COG4926	Phage-related protein	NA
UHGV-0109316_35	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0109316_35	UniRef90	UniRef90_UPI0001668E5D	phage tail family protein	NA
UHGV-0109316_35	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0109316_35	COG	COG4722	Phage-related protein YomH	NA
UHGV-0109316_35	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0109316_36	KOfam	K20283	GOLGA4; golgin subfamily A member 4	NA
UHGV-0109316_36	PHROG	phrog_10613	tail length tape measure protein	tail
UHGV-0109316_36	UniRef90	UniRef90_UPI001C12009F	peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0109316_36	eggNOG-mapper	1160721.RBI_II00528	Phage tail tape measure protein, TP901 family	NA
UHGV-0109316_36	COG	COG1006	Multisubunit Na+/H+ antiporter, MnhC subunit	NA
UHGV-0109316_36	Structural annotation	PF20155	NA	NA
UHGV-0109316_39	PHROG	phrog_88	major tail protein	tail
UHGV-0109316_39	UniRef90	UniRef90_UPI0018771F27	phage tail protein	NA
UHGV-0109316_39	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0109316_39	COG	COG5492	NA	NA
UHGV-0109316_39	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0109316_40	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0109316_40	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0109316_40	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0109316_40	Structural annotation	TIGR01725	NA	NA
UHGV-0109316_41	PHROG	phrog_78	tail terminator	connector
UHGV-0109316_41	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0109316_42	PHROG	phrog_19734	NA	unknown function
UHGV-0109316_42	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-0109316_42	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-0109316_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0109316_43	PHROG	phrog_2550	NA	unknown function
UHGV-0109316_43	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0109316_43	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0109316_43	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0109316_44	PHROG	phrog_10	major head protein	head and packaging
UHGV-0109316_44	UniRef90	UniRef90_UPI000679B959	phage major capsid protein	NA
UHGV-0109316_44	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0109316_44	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0109316_44	Pfam	PF12733	Cadherin-like beta sandwich domain	Cadherin-like
UHGV-0109316_44	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0109316_44	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0109316_44	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0109316_45	KOfam	K06904	NA	NA
UHGV-0109316_45	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0109316_45	UniRef90	UniRef90_UPI00189B2313	HK97 family phage prohead protease	NA
UHGV-0109316_45	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0109316_45	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0109316_45	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0109316_45	COG	COG3740	Phage head maturation protease	NA
UHGV-0109316_45	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0109316_46	PHROG	phrog_12	portal protein	head and packaging
UHGV-0109316_46	UniRef90	UniRef90_A0A1C6H763	Phage portal protein, HK97 family	NA
UHGV-0109316_46	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0109316_46	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0109316_46	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0109316_46	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0109316_46	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0109316_47	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0109316_47	UniRef90	UniRef90_R5VJG5	Phage terminase large subunit	NA
UHGV-0109316_47	eggNOG-mapper	1121428.DESHY_20134___1	Phage Terminase	NA
UHGV-0109316_47	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0109316_47	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0109316_47	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0109316_47	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0109316_48	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0109316_48	UniRef90	UniRef90_R5V087	Phage terminase small subunit P27 family	NA
UHGV-0109316_48	eggNOG-mapper	1033744.CAEL01000029_gene1286	Phage terminase, small subunit	NA
UHGV-0109316_48	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0109316_48	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA