UHGV-0109340

Genome information

Genome length 43,490 bps

CDS count 67

Completeness 100.00% (complete)

geNomad score 0.9810

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109340
vOTU ID	vOTU-045606
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_242856
BioSample	SAMEA3708857
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9810
Virus hallmark genes (geNomad)	6
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	44.49
Jumbo phage	No

Genome content
Genome length	43,490 bps
GC content	52.89%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	90.55%
Average CDS length	591.00 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109340_2	PHROG	phrog_199	holin	lysis
UHGV-0109340_2	UniRef90	UniRef90_A0A3E2XXQ8	Holin	NA
UHGV-0109340_2	eggNOG-mapper	742738.HMPREF9460_00365	Bacteriophage holin family	NA
UHGV-0109340_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0109340_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0109340_2	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0109340_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0109340_3	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0109340_3	PHROG	phrog_670	endolysin	lysis
UHGV-0109340_3	UniRef90	UniRef90_A0A2V2FIF5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0109340_3	eggNOG-mapper	1408437.JNJN01000008_gene890	Ami_2	NA
UHGV-0109340_3	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0109340_3	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0109340_3	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0109340_4	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-0109340_4	Structural annotation	PF13404, TIGR01636	NA	NA
UHGV-0109340_6	eggNOG-mapper	1408437.JNJN01000043_gene805	NA	NA
UHGV-0109340_8	PHROG	phrog_16490	NA	unknown function
UHGV-0109340_8	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0109340_9	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0109340_10	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0109340_12	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0109340_12	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0109340_12	UniRef90	UniRef90_A0A845MXW8	Peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-0109340_12	eggNOG-mapper	1408437.JNJN01000060_gene452	heme binding	NA
UHGV-0109340_12	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0109340_12	COG	COG0503	Adenine/guanine phosphoribosyltransferase or related PRPP-binding protein	NA
UHGV-0109340_13	KOfam	K14059	int; integrase	NA
UHGV-0109340_13	PHROG	phrog_1	integrase	integration and excision
UHGV-0109340_13	UniRef90	UniRef90_A0A417HS27	Site-specific integrase	NA
UHGV-0109340_13	eggNOG-mapper	1321814.HMPREF9089_00905	Phage integrase, N-terminal SAM-like domain	NA
UHGV-0109340_13	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0109340_13	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0109340_13	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0109340_13	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0109340_14	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0109340_15	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0109340_15	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109340_15	UniRef90	UniRef90_A0A417H7V1	XRE family transcriptional regulator	NA
UHGV-0109340_15	eggNOG-mapper	742740.HMPREF9474_04360	Pou domain - N-terminal to homeobox domain	NA
UHGV-0109340_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109340_15	COG	COG1395	Predicted transcriptional regulator	NA
UHGV-0109340_15	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0109340_16	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0109340_19	Structural annotation	COG3311	NA	NA
UHGV-0109340_23	Structural annotation	PF08962	NA	NA
UHGV-0109340_25	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0109340_25	UniRef90	UniRef90_UPI00164A4E04	siphovirus Gp157 family protein	NA
UHGV-0109340_25	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-0109340_25	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0109340_25	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0109340_26	PHROG	phrog_21649	NA	unknown function
UHGV-0109340_26	UniRef90	UniRef90_UPI0006B5ECE1	ERF family protein	NA
UHGV-0109340_26	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0109340_26	Pfam	PF04404	ERF superfamily	ERF
UHGV-0109340_26	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0109340_26	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0109340_27	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0109340_27	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0109340_27	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-0109340_27	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0109340_28	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0109340_28	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109340_28	UniRef90	UniRef90_A0A845MWL0	HNHc domain-containing protein	NA
UHGV-0109340_28	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-0109340_28	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0109340_29	UniRef90	UniRef90_A0A845MWS0	Helix-turn-helix domain-containing protein	NA
UHGV-0109340_29	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0109340_29	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0109340_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0109340_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0109340_30	UniRef90	UniRef90_A0A845MW32	Single-stranded DNA-binding protein	NA
UHGV-0109340_30	eggNOG-mapper	1408437.JNJN01000012_gene314	Single-stranded DNA-binding protein	NA
UHGV-0109340_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0109340_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0109340_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0109340_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0109340_30	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0109340_31	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0109340_31	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-0109340_31	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0109340_31	Structural annotation	PF10771, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-0109340_32	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0109340_32	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0109340_32	UniRef90	UniRef90_A0A845MUF9	DNA helicase	NA
UHGV-0109340_32	eggNOG-mapper	1408437.JNJN01000010_gene1232	Participates in initiation and elongation during chromosome replication	NA
UHGV-0109340_32	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0109340_32	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0109340_32	COG	COG0305	Replicative DNA helicase	NA
UHGV-0109340_32	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0109340_33	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0109340_33	UniRef90	UniRef90_A0A417H6W1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0109340_33	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0109340_33	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0109340_33	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0109340_34	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0109340_34	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0109340_34	UniRef90	UniRef90_A0A2U1CFM2	Methyltransferase	NA
UHGV-0109340_34	eggNOG-mapper	35241.Q9XJE8_BPTU2	helicase activity	NA
UHGV-0109340_34	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0109340_34	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0109340_34	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0109340_37	UniRef90	UniRef90_UPI00082EBC63	Lar family restriction alleviation protein	NA
UHGV-0109340_39	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0109340_39	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0109340_39	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0109340_43	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0109340_43	UniRef90	UniRef90_UPI000E473058	NA	NA
UHGV-0109340_43	eggNOG-mapper	397290.C810_05229	NA	NA
UHGV-0109340_43	Structural annotation	PF14359	NA	NA
UHGV-0109340_45	PHROG	phrog_7839	NA	unknown function
UHGV-0109340_45	eggNOG-mapper	665956.HMPREF1032_03091	NA	NA
UHGV-0109340_45	Structural annotation	PF08860	NA	NA
UHGV-0109340_46	PHROG	phrog_25385	NA	unknown function
UHGV-0109340_46	eggNOG-mapper	476272.RUMHYD_03328	NA	NA
UHGV-0109340_48	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0109340_51	UniRef90	UniRef90_A0A1Q9JGI6	RHH_1 domain-containing protein	NA
UHGV-0109340_51	eggNOG-mapper	1095750.HMPREF9970_2261	NA	NA
UHGV-0109340_51	Structural annotation	PF03869, NF041793, COG4691	NA	NA
UHGV-0109340_52	UniRef90	UniRef90_UPI00166A7EE7	helix-turn-helix domain-containing protein	NA
UHGV-0109340_52	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109340_52	Structural annotation	PF01381, NF040522	NA	NA
UHGV-0109340_53	PHROG	phrog_13890	NA	unknown function
UHGV-0109340_53	UniRef90	UniRef90_A0A845MW17	Arc family DNA-binding protein	NA
UHGV-0109340_53	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-0109340_53	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0109340_53	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-0109340_54	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0109340_54	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0109340_54	UniRef90	UniRef90_A0A2V2FED9	Terminase small subunit	NA
UHGV-0109340_54	eggNOG-mapper	702450.CUW_0530	Terminase Small Subunit	NA
UHGV-0109340_54	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0109340_54	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0109340_54	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0109340_55	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0109340_55	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0109340_55	UniRef90	UniRef90_A0A417HVY4	PBSX family phage terminase large subunit	NA
UHGV-0109340_55	eggNOG-mapper	445971.ANASTE_00711	Phage terminase, large subunit, PBSX family	NA
UHGV-0109340_55	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0109340_55	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0109340_55	COG	COG1783	Phage terminase large subunit	NA
UHGV-0109340_55	Structural annotation	PF04466, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0109340_56	PHROG	phrog_156	portal protein	head and packaging
UHGV-0109340_56	eggNOG-mapper	693746.OBV_23930	NA	NA
UHGV-0109340_56	Structural annotation	PF16510, MF_04120, TIGR01542, COG4695	NA	NA
UHGV-0109340_59	PHROG	phrog_35275	NA	unknown function
UHGV-0109340_59	eggNOG-mapper	693746.OBV_23910	NA	NA
UHGV-0109340_60	PHROG	phrog_24113	NA	unknown function
UHGV-0109340_60	eggNOG-mapper	1226322.HMPREF1545_03847	NA	NA
UHGV-0109340_60	Structural annotation	PF11133, COG5471	NA	NA
UHGV-0109340_61	PHROG	phrog_371	major head protein	head and packaging
UHGV-0109340_61	UniRef90	UniRef90_UPI00164C0E21	Mu-like prophage major head subunit gpT family protein	NA
UHGV-0109340_61	eggNOG-mapper	1226322.HMPREF1545_03848	NA	NA
UHGV-0109340_61	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0109340_62	PHROG	phrog_13046	NA	unknown function
UHGV-0109340_62	eggNOG-mapper	693746.OBV_23880	NA	NA
UHGV-0109340_62	Structural annotation	PF20387	NA	NA
UHGV-0109340_63	PHROG	phrog_3287	virion structural protein	head and packaging
UHGV-0109340_63	eggNOG-mapper	1232449.BAHV02000016_gene1816	NA	NA
UHGV-0109340_63	Structural annotation	PF11134, MF_01282, TIGR03300, COG5276	NA	NA
UHGV-0109340_64	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-0109340_64	PHROG	phrog_819	tail protein	tail
UHGV-0109340_64	eggNOG-mapper	1408437.JNJN01000030_gene1051	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0109340_64	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0109340_64	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0109340_65	PHROG	phrog_24451	NA	unknown function
UHGV-0109340_65	eggNOG-mapper	756499.Desde_1106	NA	NA
UHGV-0109340_66	PHROG	phrog_2310	NA	unknown function