UHGV-0109366

Genome information

Genome length 40,069 bps

CDS count 51

Completeness 99.90% (high-quality)

geNomad score 0.9802

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109366
vOTU ID	vOTU-076286
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_244207
BioSample	SAMEA3708889
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	20
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9802
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	49.69
Jumbo phage	No

Genome content
Genome length	40,069 bps
GC content	40.29%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	92.04%
Average CDS length	729.41 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109366_2	KOfam	K08217	mef; MFS transporter, DHA3 family, macrolide efflux protein	NA
UHGV-0109366_2	PHROG	phrog_2034	NA	unknown function
UHGV-0109366_2	UniRef90	UniRef90_C4FNH0	Transporter, major facilitator family protein	NA
UHGV-0109366_2	eggNOG-mapper	546273.VEIDISOL_00511	Transporter major facilitator family protein	NA
UHGV-0109366_2	Pfam	PF07690	Major Facilitator Superfamily	MFS_1
UHGV-0109366_2	COG	COG0477	MFS family permease, includes anhydromuropeptide permease AmpG	NA
UHGV-0109366_3	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0109366_3	UniRef90	UniRef90_F5KZP9	HTH_59 domain-containing protein	NA
UHGV-0109366_3	eggNOG-mapper	866776.HMPREF9321_1457	NA	NA
UHGV-0109366_3	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0109366_3	Structural annotation	PF20038, NF040990	NA	NA
UHGV-0109366_4	PHROG	phrog_18860	NA	unknown function
UHGV-0109366_5	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0109366_5	PHROG	phrog_435	endolysin	lysis
UHGV-0109366_5	UniRef90	UniRef90_W1WXV6	MurNAc-LAA domain-containing protein	NA
UHGV-0109366_5	eggNOG-mapper	546273.VEIDISOL_00739	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0109366_5	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0109366_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0109366_5	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0109366_6	PHROG	phrog_27828	NA	unknown function
UHGV-0109366_6	UniRef90	UniRef90_F5KZP5	Conserved domain protein	NA
UHGV-0109366_6	eggNOG-mapper	546273.VEIDISOL_00738	NA	NA
UHGV-0109366_7	eggNOG-mapper	546273.VEIDISOL_00737	NA	NA
UHGV-0109366_8	PHROG	phrog_22483	NA	unknown function
UHGV-0109366_8	UniRef90	UniRef90_A0A563DAK6	Lysyl-tRNA synthetase	NA
UHGV-0109366_8	eggNOG-mapper	1128111.HMPREF0870_01752	NA	NA
UHGV-0109366_8	Structural annotation	PF20622	NA	NA
UHGV-0109366_9	PHROG	phrog_1084	NA	unknown function
UHGV-0109366_9	eggNOG-mapper	546273.VEIDISOL_01075	NA	NA
UHGV-0109366_9	Structural annotation	PF17813, NF038186	NA	NA
UHGV-0109366_10	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0109366_10	UniRef90	UniRef90_A0A2S7YYZ8	Fibronectin type-III domain-containing protein	NA
UHGV-0109366_10	eggNOG-mapper	1123489.AUAN01000010_gene347	cellulase activity	NA
UHGV-0109366_10	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0109366_10	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0109366_10	NCBIFam	NF040662.1	host specificity factor TipJ family phage tail protein	NA
UHGV-0109366_10	COG	COG1511	NA	NA
UHGV-0109366_10	Structural annotation	PF13550, PF16383, PF00041, PF17936, PF14109, MF_04116, NF040662, NF033506, COG4733	NA	NA
UHGV-0109366_11	PHROG	phrog_329	minor tail protein	tail
UHGV-0109366_11	UniRef90	UniRef90_A0A2S7YYZ6	NlpC/P60 domain-containing protein	NA
UHGV-0109366_11	eggNOG-mapper	1128111.HMPREF0870_01757	cysteine-type peptidase activity	NA
UHGV-0109366_11	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0109366_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0109366_11	Structural annotation	PF00877, NF008096, COG3234	NA	NA
UHGV-0109366_12	PHROG	phrog_18	minor tail protein	tail
UHGV-0109366_12	UniRef90	UniRef90_A0A380N670	Phage minor tail protein L	NA
UHGV-0109366_12	eggNOG-mapper	1128111.HMPREF0870_01758	Phage minor tail protein L	NA
UHGV-0109366_12	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0109366_12	COG	COG4672	Phage tail protein	NA
UHGV-0109366_12	Structural annotation	PF08875, TIGR01600, COG4672	NA	NA
UHGV-0109366_13	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0109366_14	PHROG	phrog_22443	NA	unknown function
UHGV-0109366_14	UniRef90	UniRef90_A0A380N6K7	Phage-related minor tail protein	NA
UHGV-0109366_14	eggNOG-mapper	1128111.HMPREF0870_01760	Putative exonuclease SbcCD, C subunit	NA
UHGV-0109366_14	COG	COG4913	NA	NA
UHGV-0109366_14	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0109366_15	PHROG	phrog_23549	NA	unknown function
UHGV-0109366_15	UniRef90	UniRef90_F5KZN6	Conserved domain protein	NA
UHGV-0109366_16	PHROG	phrog_27248	NA	unknown function
UHGV-0109366_17	PHROG	phrog_290	minor tail protein	tail
UHGV-0109366_17	UniRef90	UniRef90_UPI001E4C5382	phage tail tube protein	NA
UHGV-0109366_17	eggNOG-mapper	1128111.HMPREF0870_01763	NA	NA
UHGV-0109366_17	Pfam	PF18906	Phage tail tube protein	Phage_tube_2
UHGV-0109366_17	Structural annotation	PF18906, TIGR02241, TIGR02126, COG5437, COG3498	NA	NA
UHGV-0109366_18	PHROG	phrog_17431	NA	unknown function
UHGV-0109366_18	eggNOG-mapper	1128111.HMPREF0870_01764	NA	NA
UHGV-0109366_18	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0109366_19	PHROG	phrog_222	tail protein	tail
UHGV-0109366_19	UniRef90	UniRef90_F5KZN2	Conserved domain protein	NA
UHGV-0109366_19	eggNOG-mapper	1128111.HMPREF0870_01765	NA	NA
UHGV-0109366_19	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0109366_20	PHROG	phrog_27032	NA	unknown function
UHGV-0109366_20	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0109366_21	PHROG	phrog_122	head decoration	head and packaging
UHGV-0109366_21	UniRef90	UniRef90_A0A443JDB0	NA	NA
UHGV-0109366_21	eggNOG-mapper	1005058.UMN179_02397	NA	NA
UHGV-0109366_21	Pfam	PF09956	NA	DUF2190
UHGV-0109366_21	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0109366_21	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0109366_22	KOfam	K06904	NA	NA
UHGV-0109366_22	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0109366_22	UniRef90	UniRef90_F5KZM9	Caudovirus prohead protease	NA
UHGV-0109366_22	eggNOG-mapper	1128111.HMPREF0870_01768	Caudovirus prohead protease	NA
UHGV-0109366_22	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0109366_22	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0109366_22	COG	COG3087	Cell division protein FtsN	NA
UHGV-0109366_22	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0109366_23	PHROG	phrog_21	portal protein	head and packaging
UHGV-0109366_23	UniRef90	UniRef90_F5KZM8	Phage portal protein, lambda family	NA
UHGV-0109366_23	eggNOG-mapper	1128111.HMPREF0870_01769	Phage portal protein, lambda family	NA
UHGV-0109366_23	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0109366_23	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0109366_23	COG	COG5511	Phage capsid protein	NA
UHGV-0109366_23	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0109366_24	PHROG	phrog_20307	NA	unknown function
UHGV-0109366_24	UniRef90	UniRef90_F5KZM7	Conserved domain protein	NA
UHGV-0109366_24	Structural annotation	PF19645, COG1382	NA	NA
UHGV-0109366_25	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0109366_25	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0109366_25	UniRef90	UniRef90_E1LBM6	Phage terminase large subunit (GpA)	NA
UHGV-0109366_25	eggNOG-mapper	1128111.HMPREF0870_01771	Phage terminase large subunit (GpA)	NA
UHGV-0109366_25	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0109366_25	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0109366_25	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0109366_25	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0109366_26	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0109366_26	eggNOG-mapper	1128111.HMPREF0870_01772	transposase activity	NA
UHGV-0109366_26	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0109366_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0109366_28	Pfam	PF07374	NA	DUF1492
UHGV-0109366_28	Structural annotation	PF07374, MF_00674, TIGR01636, COG1191	NA	NA
UHGV-0109366_31	PHROG	phrog_236	nucleotide kinase	other
UHGV-0109366_31	UniRef90	UniRef90_A0A380N7U2	NA	NA
UHGV-0109366_31	eggNOG-mapper	546273.VEIDISOL_00707	NA	NA
UHGV-0109366_31	Pfam	PF11753	NA	DUF3310
UHGV-0109366_31	Structural annotation	PF11753	NA	NA
UHGV-0109366_32	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0109366_32	UniRef90	UniRef90_A0A2S7ZCM0	NA	NA
UHGV-0109366_32	eggNOG-mapper	883156.HMPREF9282_01229	NA	NA
UHGV-0109366_32	Pfam	PF14359	NA	DUF4406
UHGV-0109366_32	Structural annotation	PF14359, MF_03036, TIGR03646, COG3613	NA	NA
UHGV-0109366_33	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0109366_33	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0109366_33	UniRef90	UniRef90_D1YMB8	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-0109366_33	eggNOG-mapper	1123315.AUIP01000003_gene219	crossover junction endodeoxyribonuclease RusA	NA
UHGV-0109366_33	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0109366_33	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0109366_33	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0109366_34	Structural annotation	NF010236	NA	NA
UHGV-0109366_35	PHROG	phrog_1672	NA	unknown function
UHGV-0109366_35	UniRef90	UniRef90_F5L204	Conserved domain protein	NA
UHGV-0109366_37	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0109366_37	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0109366_37	UniRef90	UniRef90_D1YMB7	Primase C terminal 2 (PriCT-2)	NA
UHGV-0109366_37	eggNOG-mapper	999413.HMPREF1094_00232	Primase C terminal 2 (PriCT-2)	NA
UHGV-0109366_37	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-0109366_37	Pfam	PF13481	AAA domain	AAA_25
UHGV-0109366_37	COG	COG3598	RecA-family ATPase	NA
UHGV-0109366_37	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-0109366_38	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0109366_38	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0109366_38	UniRef90	UniRef90_D1YMB6	Helicase C-terminal domain protein	NA
UHGV-0109366_38	eggNOG-mapper	742723.HMPREF9477_00926	helicase superfamily c-terminal domain	NA
UHGV-0109366_38	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0109366_38	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0109366_38	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0109366_38	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0109366_38	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-0109366_39	PHROG	phrog_2698	NA	unknown function
UHGV-0109366_39	UniRef90	UniRef90_A0A0R2KFV1	NA	NA
UHGV-0109366_39	eggNOG-mapper	1231377.C426_1298	NA	NA
UHGV-0109366_39	Structural annotation	PF05037	NA	NA
UHGV-0109366_40	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0109366_40	UniRef90	UniRef90_UPI00195E1D01	AAA family ATPase	NA
UHGV-0109366_40	eggNOG-mapper	1403946.Q615_SPAC00127G0154	AAA domain	NA
UHGV-0109366_40	Pfam	PF13479	AAA domain	AAA_24
UHGV-0109366_40	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-0109366_41	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0109366_41	PHROG	phrog_1499	NA	unknown function
UHGV-0109366_41	UniRef90	UniRef90_D1YMB3	RecF/RecN/SMC N-terminal domain protein	NA
UHGV-0109366_41	eggNOG-mapper	1232449.BAHV02000018_gene1548	AAA domain	NA
UHGV-0109366_41	PADLOC	AAA_15	NA	NA
UHGV-0109366_41	Pfam	PF13476	AAA domain	AAA_23
UHGV-0109366_41	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0109366_41	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-0109366_42	UniRef90	UniRef90_A0A380N5Z7	HTH cro/C1-type domain-containing protein	NA
UHGV-0109366_42	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109366_42	Structural annotation	PF01381, NF000090, COG3655	NA	NA
UHGV-0109366_43	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0109366_43	Structural annotation	PF21291, MF_00535, NF041951, COG3655	NA	NA
UHGV-0109366_45	PHROG	phrog_6058	NA	unknown function
UHGV-0109366_45	Structural annotation	PF09035, NF033787	NA	NA
UHGV-0109366_47	UniRef90	UniRef90_W1V8T2	NA	NA
UHGV-0109366_47	eggNOG-mapper	1347392.CCEZ01000005_gene1206	NA	NA
UHGV-0109366_47	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-0109366_48	UniRef90	UniRef90_UPI00068C50D9	transcriptional regulator	NA
UHGV-0109366_48	eggNOG-mapper	936589.HMPREF1521_1175	sequence-specific DNA binding	NA
UHGV-0109366_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109366_48	Structural annotation	PF13443, MF_00535, NF041951, COG1396	NA	NA
UHGV-0109366_49	PHROG	phrog_1914	NA	unknown function
UHGV-0109366_49	UniRef90	UniRef90_A0A096AM06	Peptidase_M78 domain-containing protein	NA
UHGV-0109366_49	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0109366_49	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0109366_50	Structural annotation	PF15028, COG5342	NA	NA
UHGV-0109366_51	KOfam	K14059	int; integrase	NA
UHGV-0109366_51	PHROG	phrog_1	integrase	integration and excision
UHGV-0109366_51	UniRef90	UniRef90_A0A563DAX4	Site-specific integrase	NA
UHGV-0109366_51	eggNOG-mapper	883156.HMPREF9282_00919	Belongs to the 'phage' integrase family	NA
UHGV-0109366_51	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0109366_51	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0109366_51	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA