UHGV-0109384

Genome information

Genome length 37,325 bps

CDS count 54

Completeness 99.90% (high-quality)

geNomad score 0.9813

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109384
vOTU ID	vOTU-079403
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253494
BioSample	SAMEA3708753
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	15
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9813
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	15.61
Jumbo phage	No

Genome content
Genome length	37,325 bps
GC content	44.60%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	54
CDS density	91.94%
Average CDS length	640.56 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109384_1	UniRef90	UniRef90_A0A3D2X9C1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB (Fragment)	NA
UHGV-0109384_1	eggNOG-mapper	500632.CLONEX_01630	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0109384_1	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0109384_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0109384_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0109384_2	UniRef90	UniRef90_A0A374JP43	Recombinase family protein	NA
UHGV-0109384_2	eggNOG-mapper	411468.CLOSCI_00582	Recombinase	NA
UHGV-0109384_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0109384_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0109384_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0109384_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0109384_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0109384_3	UniRef90	UniRef90_UPI00189EDAF9	helix-turn-helix transcriptional regulator	NA
UHGV-0109384_3	eggNOG-mapper	1226325.HMPREF1548_06747	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0109384_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0109384_10	UniRef90	UniRef90_A0A374JR06	DNA-binding protein	NA
UHGV-0109384_10	eggNOG-mapper	1226325.HMPREF1548_06746	NA	NA
UHGV-0109384_13	Structural annotation	PF13058	NA	NA
UHGV-0109384_16	eggNOG-mapper	411468.CLOSCI_00572	NA	NA
UHGV-0109384_18	PHROG	phrog_20014	NA	unknown function
UHGV-0109384_18	eggNOG-mapper	1235798.C817_02590	NA	NA
UHGV-0109384_19	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0109384_19	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0109384_19	UniRef90	UniRef90_UPI00189F9B8A	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0109384_19	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0109384_19	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-0109384_19	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0109384_19	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0109384_19	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0109384_19	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0109384_20	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0109384_20	PHROG	phrog_25385	NA	unknown function
UHGV-0109384_20	UniRef90	UniRef90_UPI00189D9989	DNA cytosine methyltransferase	NA
UHGV-0109384_20	eggNOG-mapper	411468.CLOSCI_00565	NA	NA
UHGV-0109384_20	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0109384_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0109384_22	PHROG	phrog_24386	NA	unknown function
UHGV-0109384_22	eggNOG-mapper	411468.CLOSCI_00562	COG NOG28949 non supervised orthologous group	NA
UHGV-0109384_22	COG	COG0241	Histidinol phosphatase/D-glycero-mannoheptose bisphosphatephosphatase, HAD superfamily	NA
UHGV-0109384_22	Structural annotation	TIGR01689, COG0241	NA	NA
UHGV-0109384_24	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0109384_24	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0109384_24	UniRef90	UniRef90_A0A7U9R7H5	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0109384_24	eggNOG-mapper	397291.C804_05723	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0109384_24	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0109384_24	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0109384_24	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0109384_25	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0109384_25	eggNOG-mapper	411468.CLOSCI_00558	NA	NA
UHGV-0109384_25	Structural annotation	PF21578	NA	NA
UHGV-0109384_26	PHROG	phrog_824	NA	unknown function
UHGV-0109384_26	UniRef90	UniRef90_A0A374JR68	VRR-NUC domain-containing protein	NA
UHGV-0109384_26	eggNOG-mapper	411468.CLOSCI_00556	VRR_NUC	NA
UHGV-0109384_26	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0109384_27	eggNOG-mapper	1235800.C819_02253	NA	NA
UHGV-0109384_28	eggNOG-mapper	411468.CLOSCI_00554	NA	NA
UHGV-0109384_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109384_29	UniRef90	UniRef90_A0A374JQS6	HNH endonuclease	NA
UHGV-0109384_29	eggNOG-mapper	411468.CLOSCI_00553	HNH endonuclease	NA
UHGV-0109384_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0109384_30	PHROG	phrog_1066	NA	unknown function
UHGV-0109384_30	eggNOG-mapper	411468.CLOSCI_00552	NA	NA
UHGV-0109384_31	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0109384_31	UniRef90	UniRef90_A0A374JP15	Terminase large subunit	NA
UHGV-0109384_31	eggNOG-mapper	411468.CLOSCI_00551	COG COG4626 Phage terminase-like protein, large subunit	NA
UHGV-0109384_31	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0109384_31	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0109384_31	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0109384_31	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0109384_32	PHROG	phrog_12	portal protein	head and packaging
UHGV-0109384_32	UniRef90	UniRef90_A0A374JP76	Phage portal protein	NA
UHGV-0109384_32	eggNOG-mapper	411468.CLOSCI_00550	Phage portal protein	NA
UHGV-0109384_32	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0109384_32	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0109384_32	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0109384_33	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0109384_33	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0109384_33	UniRef90	UniRef90_A0A374JQH6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0109384_33	eggNOG-mapper	411468.CLOSCI_00549	COG COG0740 Protease subunit of ATP-dependent Clp proteases	NA
UHGV-0109384_33	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0109384_33	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0109384_33	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0109384_34	PHROG	phrog_10	major head protein	head and packaging
UHGV-0109384_34	UniRef90	UniRef90_A0A374JNW0	Phage major capsid protein	NA
UHGV-0109384_34	eggNOG-mapper	411468.CLOSCI_00548	Phage capsid family	NA
UHGV-0109384_34	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0109384_34	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0109384_34	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0109384_35	PHROG	phrog_5223	neck protein	connector
UHGV-0109384_35	UniRef90	UniRef90_A0A174XIL0	NA	NA
UHGV-0109384_35	eggNOG-mapper	411468.CLOSCI_00547	NA	NA
UHGV-0109384_36	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0109384_36	UniRef90	UniRef90_UPI00189EBA11	phage head closure protein	NA
UHGV-0109384_36	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-0109384_36	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0109384_36	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0109384_36	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0109384_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0109384_37	UniRef90	UniRef90_UPI001C00E12E	HK97 gp10 family phage protein	NA
UHGV-0109384_37	eggNOG-mapper	457421.CBFG_03712	NA	NA
UHGV-0109384_37	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0109384_38	eggNOG-mapper	411468.CLOSCI_00544	NA	NA
UHGV-0109384_38	Structural annotation	PF20765	NA	NA
UHGV-0109384_39	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0109384_39	eggNOG-mapper	411468.CLOSCI_00543	NA	NA
UHGV-0109384_39	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0109384_40	PHROG	phrog_29863	NA	unknown function
UHGV-0109384_40	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-0109384_40	Structural annotation	PF17388	NA	NA
UHGV-0109384_41	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0109384_41	UniRef90	UniRef90_A0A174XH68	Phage tail tape measure protein, TP901 family	NA
UHGV-0109384_41	eggNOG-mapper	411468.CLOSCI_00540	Phage tail tape measure protein, TP901 family	NA
UHGV-0109384_41	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0109384_41	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0109384_41	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0109384_41	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0109384_42	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0109384_42	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0109384_42	eggNOG-mapper	1567011.A0A0A7RWN1_9VIRU	Phage tail protein	NA
UHGV-0109384_42	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0109384_42	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0109384_43	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0109384_43	UniRef90	UniRef90_UPI00189EFADE	phage tail protein	NA
UHGV-0109384_43	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0109384_43	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0109384_43	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0109384_43	COG	COG4926	Phage-related protein	NA
UHGV-0109384_43	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0109384_46	PHROG	phrog_17147	NA	unknown function
UHGV-0109384_46	UniRef90	UniRef90_A0A374JQW7	NA	NA
UHGV-0109384_46	eggNOG-mapper	33035.JPJF01000043_gene1001	NA	NA
UHGV-0109384_46	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0109384_47	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0109384_47	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0109384_47	UniRef90	UniRef90_A0A374JNY7	Reverse transcriptase domain-containing protein	NA
UHGV-0109384_47	eggNOG-mapper	33035.JPJF01000043_gene1000	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0109384_47	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0109384_47	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0109384_47	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0109384_47	Structural annotation	PF00078, MF_04065, TIGR04416, COG3344	NA	NA
UHGV-0109384_50	eggNOG-mapper	742733.HMPREF9469_01798	NA	NA
UHGV-0109384_51	PHROG	phrog_263	holin	lysis
UHGV-0109384_51	UniRef90	UniRef90_R6GD40	Holin SPP1 family	NA
UHGV-0109384_51	eggNOG-mapper	764291.STRUR_2085	SPP1 phage holin	NA
UHGV-0109384_51	Pfam	PF04688	SPP1 phage holin	Holin_SPP1
UHGV-0109384_51	NCBIFam	TIGR01592.1	phage holin	NA
UHGV-0109384_51	Structural annotation	PF04688, TIGR01592	NA	NA
UHGV-0109384_52	KOfam	K07273	acm; lysozyme	NA
UHGV-0109384_52	PHROG	phrog_291	endolysin	lysis
UHGV-0109384_52	UniRef90	UniRef90_A0A374JNX4	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0109384_52	eggNOG-mapper	521003.COLINT_02363	CW_7 repeat	NA
UHGV-0109384_52	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0109384_52	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0109384_52	Pfam	PF01476	LysM domain	LysM
UHGV-0109384_52	COG	COG1388	LysM repeat	NA
UHGV-0109384_52	Structural annotation	PF01183, PF01476, TIGR02899, COG3757, COG1388	NA	NA
UHGV-0109384_53	KOfam	K06168	miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]	NA
UHGV-0109384_53	UniRef90	UniRef90_R6PGJ9	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	NA
UHGV-0109384_53	eggNOG-mapper	742723.HMPREF9477_00628	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0109384_53	Pfam	PF00919	NA	UPF0004
UHGV-0109384_53	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0109384_53	Pfam	PF01938	TRAM domain	TRAM
UHGV-0109384_53	NCBIFam	TIGR01574.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA
UHGV-0109384_53	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0109384_53	HAMAP	MF_01864	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]	NA
UHGV-0109384_53	Structural annotation	PF00919, PF20903, MF_01864, TIGR01574, COG0621	NA	NA
UHGV-0109384_54	PHROG	phrog_20274	NA	unknown function
UHGV-0109384_54	UniRef90	UniRef90_A0A316A4B8	ABC-transporter type IV	NA
UHGV-0109384_54	eggNOG-mapper	500632.CLONEX_01633	NA	NA
UHGV-0109384_54	Pfam	PF06541	Putative ABC-transporter type IV	ABC_trans_CmpB
UHGV-0109384_54	COG	COG4905	NA	NA
UHGV-0109384_54	Structural annotation	PF06541, COG4905	NA	NA