UHGV-0109387

Genome information

Genome length 28,586 bps

CDS count 43

Completeness 80.67% (medium-quality)

geNomad score 0.9766

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109387
vOTU ID	vOTU-027196
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253503
BioSample	SAMEA3708753
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	80.67% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	21
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9766
Virus hallmark genes (geNomad)	15
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	61.7
Jumbo phage	No

Genome content
Genome length	28,586 bps
GC content	45.19%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	43
CDS density	92.77%
Average CDS length	620.79 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109387_1	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0109387_1	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109387_1	UniRef90	UniRef90_A0A350TVJ4	HTH cro/C1-type domain-containing protein	NA
UHGV-0109387_1	eggNOG-mapper	290402.Cbei_1615	transcriptional regulator	NA
UHGV-0109387_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109387_1	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109387_2	Structural annotation	PF01381, NF041575, COG1476	NA	NA
UHGV-0109387_3	PHROG	phrog_7445	NA	unknown function
UHGV-0109387_3	UniRef90	UniRef90_UPI000FD875FF	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0109387_3	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0109387_3	Structural annotation	PF14058	NA	NA
UHGV-0109387_4	PHROG	phrog_8470	NA	unknown function
UHGV-0109387_4	UniRef90	UniRef90_UPI001875A728	PcfJ domain-containing protein	NA
UHGV-0109387_4	eggNOG-mapper	1157490.EL26_01845	PcfJ-like protein	NA
UHGV-0109387_4	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0109387_4	Structural annotation	PF14284	NA	NA
UHGV-0109387_5	PHROG	phrog_15609	NA	unknown function
UHGV-0109387_5	UniRef90	UniRef90_UPI001875FF23	NA	NA
UHGV-0109387_5	eggNOG-mapper	1007096.BAGW01000031_gene118	NA	NA
UHGV-0109387_5	Pfam	PF11300	NA	DUF3102
UHGV-0109387_5	COG	COG2433	Possible nuclease of RNase H fold, RuvC/YqgF family	NA
UHGV-0109387_5	Structural annotation	PF11300, PF07321, NF038070	NA	NA
UHGV-0109387_7	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0109387_7	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0109387_7	eggNOG-mapper	318464.IO99_13830	NA	NA
UHGV-0109387_7	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0109387_8	PHROG	phrog_7566	NA	unknown function
UHGV-0109387_8	eggNOG-mapper	1280698.AUJS01000007_gene1020	NA	NA
UHGV-0109387_9	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0109387_9	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0109387_9	UniRef90	UniRef90_A0A352UR43	Single-stranded DNA-binding protein	NA
UHGV-0109387_9	eggNOG-mapper	97138.C820_02339	Single-stranded DNA-binding protein	NA
UHGV-0109387_9	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0109387_9	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0109387_9	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0109387_9	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0109387_9	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0109387_10	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0109387_11	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0109387_12	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0109387_13	eggNOG-mapper	596152.DesU5LDRAFT_1910	NA	NA
UHGV-0109387_13	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0109387_14	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0109387_14	UniRef90	UniRef90_R6ZAS5	GED domain-containing protein	NA
UHGV-0109387_14	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0109387_14	Structural annotation	PF02996	NA	NA
UHGV-0109387_16	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0109387_16	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109387_16	UniRef90	UniRef90_A0A352UR35	HNH endonuclease	NA
UHGV-0109387_16	eggNOG-mapper	1304866.K413DRAFT_1217	HNH nucleases	NA
UHGV-0109387_17	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0109387_17	UniRef90	UniRef90_A0A1C6JNN5	Phage terminase, small subunit	NA
UHGV-0109387_17	eggNOG-mapper	397288.C806_00077	NA	NA
UHGV-0109387_17	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0109387_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0109387_18	UniRef90	UniRef90_A0A352UR33	Terminase	NA
UHGV-0109387_18	eggNOG-mapper	1414720.CBYM010000002_gene575	Terminase	NA
UHGV-0109387_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0109387_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0109387_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0109387_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0109387_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-0109387_19	UniRef90	UniRef90_A0A352UR32	Phage portal protein	NA
UHGV-0109387_19	eggNOG-mapper	397288.C806_00075	Portal protein	NA
UHGV-0109387_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0109387_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0109387_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0109387_19	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0109387_20	KOfam	K06904	NA	NA
UHGV-0109387_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0109387_20	UniRef90	UniRef90_A0A352UR31	HK97 family phage prohead protease	NA
UHGV-0109387_20	eggNOG-mapper	1304866.K413DRAFT_1224	Phage prohead protease, HK97 family	NA
UHGV-0109387_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0109387_20	COG	COG3740	Phage head maturation protease	NA
UHGV-0109387_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0109387_21	PHROG	phrog_10	major head protein	head and packaging
UHGV-0109387_21	UniRef90	UniRef90_A0A352UR30	Phage major capsid protein	NA
UHGV-0109387_21	eggNOG-mapper	397288.C806_00073	phage major capsid protein, HK97 family	NA
UHGV-0109387_21	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0109387_21	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0109387_21	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0109387_21	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0109387_22	PHROG	phrog_3281	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0109387_22	UniRef90	UniRef90_A0A352UR29	SAP domain-containing protein	NA
UHGV-0109387_22	Pfam	PF02037	SAP domain	SAP
UHGV-0109387_22	Structural annotation	PF07498	NA	NA
UHGV-0109387_23	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0109387_23	UniRef90	UniRef90_UPI0019610EBA	head-tail connector protein	NA
UHGV-0109387_23	eggNOG-mapper	397288.C806_00072	Phage gp6-like head-tail connector protein	NA
UHGV-0109387_23	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0109387_23	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0109387_23	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0109387_24	PHROG	phrog_25	head closure Hc1	connector
UHGV-0109387_24	UniRef90	UniRef90_A0A352UR27	Head-tail adaptor protein	NA
UHGV-0109387_24	eggNOG-mapper	935948.KE386495_gene1331	Phage head-tail joining protein	NA
UHGV-0109387_24	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0109387_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0109387_24	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0109387_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0109387_25	UniRef90	UniRef90_UPI0019610B0B	HK97 gp10 family phage protein	NA
UHGV-0109387_25	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-0109387_26	PHROG	phrog_525	NA	unknown function
UHGV-0109387_26	Pfam	PF20765	NA	DUF6838
UHGV-0109387_26	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-0109387_27	PHROG	phrog_1480	tail sheath	tail
UHGV-0109387_27	UniRef90	UniRef90_A0A352UR24	Phage tail sheath protein	NA
UHGV-0109387_27	eggNOG-mapper	1195236.CTER_0289	Phage tail sheath C-terminal domain	NA
UHGV-0109387_27	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0109387_27	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0109387_27	Structural annotation	PF10758, COG3497	NA	NA
UHGV-0109387_28	PHROG	phrog_365	tail protein	tail
UHGV-0109387_28	UniRef90	UniRef90_A0A352UR23	Phage portal protein	NA
UHGV-0109387_28	eggNOG-mapper	1195236.CTER_0288	Phage tail tube protein	NA
UHGV-0109387_28	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0109387_28	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0109387_29	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0109387_29	UniRef90	UniRef90_UPI0012672CCD	XkdN-like protein	NA
UHGV-0109387_29	eggNOG-mapper	332101.JIBU02000023_gene4806	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0109387_29	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0109387_29	Structural annotation	PF08890	NA	NA
UHGV-0109387_31	PHROG	phrog_33570	NA	unknown function
UHGV-0109387_31	UniRef90	UniRef90_A0A352UR20	TMP_3 domain-containing protein	NA
UHGV-0109387_31	eggNOG-mapper	756499.Desde_4119	tape measure	NA
UHGV-0109387_31	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0109387_31	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0109387_31	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0109387_31	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0109387_32	PHROG	phrog_380	endolysin	lysis
UHGV-0109387_32	UniRef90	UniRef90_A0A352UR19	LysM domain-containing protein	NA
UHGV-0109387_32	eggNOG-mapper	1286171.EAL2_c11150	LysM domain	NA
UHGV-0109387_32	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0109387_32	Pfam	PF01476	LysM domain	LysM
UHGV-0109387_32	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0109387_32	Structural annotation	PF21821, MF_02014, TIGR02126, NF010723, COG3499	NA	NA
UHGV-0109387_33	PHROG	phrog_400	tail protein	tail
UHGV-0109387_33	UniRef90	UniRef90_A0A7S7J193	Alpha/beta hydrolase	NA
UHGV-0109387_33	eggNOG-mapper	756499.Desde_4121	NLP P60 protein	NA
UHGV-0109387_33	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0109387_33	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0109387_34	PHROG	phrog_579	NA	unknown function
UHGV-0109387_34	UniRef90	UniRef90_UPI001961C6CF	NA	NA
UHGV-0109387_34	eggNOG-mapper	1230342.CTM_14433	NA	NA
UHGV-0109387_34	Pfam	PF10844	NA	DUF2577
UHGV-0109387_34	Structural annotation	PF10844, TIGR00523	NA	NA
UHGV-0109387_35	PHROG	phrog_120	baseplate protein	tail
UHGV-0109387_35	UniRef90	UniRef90_A0A352UR16	DNA-packaging protein	NA
UHGV-0109387_35	eggNOG-mapper	1151292.QEW_1754	NA	NA
UHGV-0109387_35	Pfam	PF10934	NA	DUF2634
UHGV-0109387_35	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0109387_36	PHROG	phrog_6	baseplate protein	tail
UHGV-0109387_36	UniRef90	UniRef90_A0A352UR15	Baseplate J protein	NA
UHGV-0109387_36	eggNOG-mapper	756499.Desde_4124	Baseplate J-like protein	NA
UHGV-0109387_36	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0109387_36	COG	COG3299	NA	NA
UHGV-0109387_36	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0109387_37	PHROG	phrog_521	tail protein	tail
UHGV-0109387_37	UniRef90	UniRef90_A0A352UR14	Phage portal protein	NA
UHGV-0109387_37	eggNOG-mapper	1291050.JAGE01000001_gene2937	NA	NA
UHGV-0109387_37	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0109387_37	COG	COG3778	NA	NA
UHGV-0109387_37	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA
UHGV-0109387_38	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0109387_39	PHROG	phrog_937	hemolysin	other
UHGV-0109387_39	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0109387_41	PHROG	phrog_13256	NA	unknown function
UHGV-0109387_41	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0109387_42	KOfam	K17733	cwlK; peptidoglycan LD-endopeptidase CwlK [EC:3.4.-.-]	NA
UHGV-0109387_42	PHROG	phrog_6523	endolysin	lysis
UHGV-0109387_42	UniRef90	UniRef90_A0A0X8VE59	Peptidoglycan L-alanyl-D-glutamate endopeptidase CwlK	NA
UHGV-0109387_42	eggNOG-mapper	642492.Clole_2733	D-alanyl-D-alanine carboxypeptidase	NA
UHGV-0109387_42	Pfam	PF13539	D-alanyl-D-alanine carboxypeptidase	Peptidase_M15_4
UHGV-0109387_42	COG	COG1876	LD-carboxypeptidase LdcB, LAS superfamily	NA
UHGV-0109387_42	Structural annotation	PF02557, NF007557, COG2173	NA	NA
UHGV-0109387_43	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0109387_43	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0109387_43	UniRef90	UniRef90_A0A1C1A8I5	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0109387_43	eggNOG-mapper	871963.Desdi_3340	PFAM D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0109387_43	PADLOC	MTase_II_00052	Type II methyltransferase	RM
UHGV-0109387_43	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0109387_43	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0109387_43	COG	COG0338	DNA-adenine methylase	NA
UHGV-0109387_43	Structural annotation	PF02086, MF_01872, TIGR00571, COG0338	NA	NA