UHGV-0109438

Genome information

Genome length 45,108 bps

CDS count 67

Completeness 100.00% (complete)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109438
vOTU ID	vOTU-045611
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_255525
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.84
Jumbo phage	No

Genome content
Genome length	45,108 bps
GC content	46.57%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	67
CDS density	90.53%
Average CDS length	612.94 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109438_1	PHROG	phrog_5302	tail protein	tail
UHGV-0109438_1	eggNOG-mapper	935948.KE386495_gene1319	NA	NA
UHGV-0109438_4	PHROG	phrog_13879	NA	unknown function
UHGV-0109438_4	eggNOG-mapper	1122919.KB905559_gene1344	NA	NA
UHGV-0109438_4	Structural annotation	PF14594, PF21114, MF_00813, NF033848, TIGR02961, COG4379, COG4266	NA	NA
UHGV-0109438_5	PHROG	phrog_1194	NA	unknown function
UHGV-0109438_5	eggNOG-mapper	665956.HMPREF1032_03629	NA	NA
UHGV-0109438_5	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0109438_6	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0109438_6	UniRef90	UniRef90_A0A1C6GVH2	Phage-related protein	NA
UHGV-0109438_6	eggNOG-mapper	445972.ANACOL_01854	tape measure	NA
UHGV-0109438_6	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0109438_6	Structural annotation	PF08919	NA	NA
UHGV-0109438_8	Structural annotation	PF11836	NA	NA
UHGV-0109438_9	PHROG	phrog_1407	major tail protein	tail
UHGV-0109438_9	UniRef90	UniRef90_A0A8D9UH75	Major tail protein	NA
UHGV-0109438_9	eggNOG-mapper	997346.HMPREF9374_2640	Phage tail tube protein	NA
UHGV-0109438_9	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-0109438_9	COG	COG5437	Phage tail protein, TP901-1 family	NA
UHGV-0109438_9	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0109438_10	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0109438_10	Structural annotation	PF12691	NA	NA
UHGV-0109438_11	UniRef90	UniRef90_A0A8D9PDS5	Minor capsid protein	NA
UHGV-0109438_11	Structural annotation	PF11114, TIGR01725	NA	NA
UHGV-0109438_12	Structural annotation	PF10665, TIGR01563	NA	NA
UHGV-0109438_13	PHROG	phrog_477	head-tail adaptor Ad1	connector
UHGV-0109438_13	UniRef90	UniRef90_A0A8D9UHB0	Putative head tail connector protein	NA
UHGV-0109438_13	Pfam	PF20557	Putative DnaT-like ssDNA binding protein	DnaT_2
UHGV-0109438_13	Structural annotation	PF20557	NA	NA
UHGV-0109438_14	PHROG	phrog_247	major head protein	head and packaging
UHGV-0109438_14	UniRef90	UniRef90_A0A3D0LY55	Coat protein	NA
UHGV-0109438_14	eggNOG-mapper	1304866.K413DRAFT_3038	NA	NA
UHGV-0109438_14	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0109438_14	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0109438_15	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0109438_15	UniRef90	UniRef90_A0A8D9PDR7	Minor structural protein	NA
UHGV-0109438_15	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0109438_15	Structural annotation	PF06810	NA	NA
UHGV-0109438_16	eggNOG-mapper	641112.ACOK01000073_gene2912	NA	NA
UHGV-0109438_17	PHROG	phrog_9589	endolysin	lysis
UHGV-0109438_17	UniRef90	UniRef90_D3AIX8	Cell wall-binding repeat protein	NA
UHGV-0109438_17	eggNOG-mapper	1118060.CAGZ01000031_gene1348	CHAP domain	NA
UHGV-0109438_17	Pfam	PF05257	CHAP domain	CHAP
UHGV-0109438_17	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0109438_17	Structural annotation	PF10030, TIGR02594, COG3942	NA	NA
UHGV-0109438_18	Pfam	PF09479	Listeria-Bacteroides repeat domain (List_Bact_rpt)	Flg_new
UHGV-0109438_18	Structural annotation	PF18998, PF20328	NA	NA
UHGV-0109438_19	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0109438_20	PHROG	phrog_13589	NA	unknown function
UHGV-0109438_20	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-0109438_21	PHROG	phrog_31538	NA	unknown function
UHGV-0109438_22	PHROG	phrog_1084	NA	unknown function
UHGV-0109438_22	UniRef90	UniRef90_A0A7V3MME9	NA	NA
UHGV-0109438_22	eggNOG-mapper	910314.HMPREF9220_1078	NA	NA
UHGV-0109438_22	Structural annotation	PF16407, NF032891, COG5456	NA	NA
UHGV-0109438_23	PHROG	phrog_533	portal protein	head and packaging
UHGV-0109438_23	UniRef90	UniRef90_A0A8D9PDR4	Portal protein	NA
UHGV-0109438_23	eggNOG-mapper	86416.Clopa_2538	PFAM Phage portal protein, SPP1 Gp6-like	NA
UHGV-0109438_23	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0109438_23	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0109438_24	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0109438_24	PHROG	phrog_10250	NA	unknown function
UHGV-0109438_24	UniRef90	UniRef90_A0A8D9PDX0	Large terminase	NA
UHGV-0109438_24	eggNOG-mapper	1329516.JPST01000014_gene657	Phage terminase, large subunit	NA
UHGV-0109438_24	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0109438_24	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0109438_24	COG	COG1783	Phage terminase large subunit	NA
UHGV-0109438_24	Structural annotation	PF04466, PF17289, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0109438_28	Structural annotation	PF13973, TIGR00739, COG4481	NA	NA
UHGV-0109438_35	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0109438_35	PHROG	phrog_30550	NA	unknown function
UHGV-0109438_35	UniRef90	UniRef90_A0A1Y4W1Z7	Hydrolase_2 domain-containing protein	NA
UHGV-0109438_35	eggNOG-mapper	1519439.JPJG01000077_gene920	Cell Wall Hydrolase	NA
UHGV-0109438_35	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0109438_37	PHROG	phrog_6038	NA	unknown function
UHGV-0109438_38	UniRef90	UniRef90_A0A8D9PE04	Cyanate hydratase	NA
UHGV-0109438_40	PHROG	phrog_1218	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109438_40	Pfam	PF12705	PD-(D/E)XK nuclease superfamily	PDDEXK_1
UHGV-0109438_40	Structural annotation	PF12705, TIGR00372, COG2887	NA	NA
UHGV-0109438_41	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0109438_41	PHROG	phrog_37855	NA	unknown function
UHGV-0109438_41	UniRef90	UniRef90_A0A3B8JC42	Stage 0 sporulation protein A homolog (Fragment)	NA
UHGV-0109438_41	eggNOG-mapper	645991.Sgly_2090	May play the central regulatory role in sporulation. It may be an element of the effector pathway responsible for the activation of sporulation genes in response to nutritional stress. Spo0A may act in concert with spo0H (a sigma factor) to control the expression of some genes that are critical to the sporulation process	NA
UHGV-0109438_41	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0109438_41	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0109438_41	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0109438_42	PHROG	phrog_3489	NA	unknown function
UHGV-0109438_42	UniRef90	UniRef90_A0A8D9PE01	DNA-binding domain protein	NA
UHGV-0109438_42	Structural annotation	PF19157, NF002506	NA	NA
UHGV-0109438_43	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0109438_43	UniRef90	UniRef90_A0A8D9PDX3	AAA domain protein	NA
UHGV-0109438_43	eggNOG-mapper	1499967.BAYZ01000197_gene3023	plasmid maintenance	NA
UHGV-0109438_43	Pfam	PF13479	AAA domain	AAA_24
UHGV-0109438_43	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0109438_43	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0109438_44	KOfam	K09125	yhhQ; queuosine precursor transporter	NA
UHGV-0109438_44	PHROG	phrog_4899	NA	unknown function
UHGV-0109438_44	UniRef90	UniRef90_UPI000F068A5D	queuosine precursor transporter	NA
UHGV-0109438_44	eggNOG-mapper	1203606.HMPREF1526_02400	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage	NA
UHGV-0109438_44	Pfam	PF02592	Putative vitamin uptake transporter	Vut_1
UHGV-0109438_44	NCBIFam	TIGR00697.1	queuosine precursor transporter	NA
UHGV-0109438_44	COG	COG1738	NA	NA
UHGV-0109438_44	HAMAP	MF_02088	Probable queuosine precursor transporter	NA
UHGV-0109438_44	Structural annotation	PF02592, MF_02088, TIGR00697, COG1738	NA	NA
UHGV-0109438_45	PHROG	phrog_3724	NA	unknown function
UHGV-0109438_45	UniRef90	UniRef90_A0A3M8AMJ4	NA	NA
UHGV-0109438_45	eggNOG-mapper	1178540.BA70_16405	NA	NA
UHGV-0109438_45	Pfam	PF05037	NA	DUF669
UHGV-0109438_45	Structural annotation	PF05037, NF011800	NA	NA
UHGV-0109438_46	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0109438_46	PHROG	phrog_18685	NA	unknown function
UHGV-0109438_46	UniRef90	UniRef90_A0A8D9PDW5	DNA directed DNA polymerase	NA
UHGV-0109438_46	eggNOG-mapper	360911.EAT1b_0006	DNA primase activity	NA
UHGV-0109438_46	PADLOC	drt-cluster192	DRT	DRT
UHGV-0109438_46	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0109438_46	Pfam	PF13662	Toprim domain	Toprim_4
UHGV-0109438_46	Pfam	PF00493	MCM P-loop domain	MCM
UHGV-0109438_46	COG	COG1241	DNA replicative helicase MCM subunit Mcm2, Cdc46/Mcm family	NA
UHGV-0109438_46	Structural annotation	PF00493, PF01807, PF13155, PF14947, MF_00974, MF_01314, NF040949, TIGR01391, COG1241	NA	NA
UHGV-0109438_47	UniRef90	UniRef90_A0A8D9UHA8	AspA family protein	NA
UHGV-0109438_47	Structural annotation	PF21100, MF_01911, NF040642, COG0640	NA	NA
UHGV-0109438_48	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0109438_48	UniRef90	UniRef90_A0A7C6S799	Nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0109438_48	eggNOG-mapper	445335.CBN_1220	MazG nucleotide pyrophosphohydrolase	NA
UHGV-0109438_48	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0109438_48	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0109438_48	Structural annotation	PF01503, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0109438_49	PHROG	phrog_236	nucleotide kinase	other
UHGV-0109438_49	UniRef90	UniRef90_A0A7C6S6P5	NA	NA
UHGV-0109438_49	eggNOG-mapper	447909.A6M9A0_9VIRU	NA	NA
UHGV-0109438_49	Pfam	PF11753	NA	DUF3310
UHGV-0109438_50	PHROG	phrog_19058	NA	unknown function
UHGV-0109438_50	UniRef90	UniRef90_A0A7T8IX45	DNA guanine transglycosylase	NA
UHGV-0109438_50	eggNOG-mapper	996637.SGM_5178	NA	NA
UHGV-0109438_50	Structural annotation	PF20314, MF_00168, TIGR00449, COG0343	NA	NA
UHGV-0109438_51	KOfam	K00601	E2.1.2.2; phosphoribosylglycinamide formyltransferase [EC:2.1.2.2]	NA
UHGV-0109438_51	UniRef90	UniRef90_A0A2D6F056	Formyl_trans_N domain-containing protein	NA
UHGV-0109438_51	eggNOG-mapper	765869.BDW_11080	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate	NA
UHGV-0109438_51	Pfam	PF00551	Formyl transferase	Formyl_trans_N
UHGV-0109438_51	COG	COG0299	Folate-dependent phosphoribosylglycinamide formyltransferase PurN	NA
UHGV-0109438_51	Structural annotation	PF00551, MF_01930, TIGR00655, COG0299	NA	NA
UHGV-0109438_52	KOfam	K02335	polA; DNA polymerase I [EC:2.7.7.7]	NA
UHGV-0109438_52	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0109438_52	UniRef90	UniRef90_A0A7C6W992	DNA polymerase I	NA
UHGV-0109438_52	eggNOG-mapper	935948.KE386495_gene2287	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity	NA
UHGV-0109438_52	PADLOC	drt-cluster58	DRT	DRT
UHGV-0109438_52	Pfam	PF01612	3'-5' exonuclease	DNA_pol_A_exo1
UHGV-0109438_52	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-0109438_52	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-0109438_52	Structural annotation	PF00476, PF01612, MF_04101, NF004397, COG0749	NA	NA
UHGV-0109438_53	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0109438_53	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0109438_53	UniRef90	UniRef90_A0A8D9PDR8	Chromatin remodeling complex ATPase	NA
UHGV-0109438_53	eggNOG-mapper	1238237.CP10139811_0639	SNF2 family	NA
UHGV-0109438_53	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0109438_53	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0109438_53	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0109438_53	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0109438_53	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0109438_55	UniRef90	UniRef90_A0A8D9PDZ3	Holliday junction resolvase	NA
UHGV-0109438_55	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0109438_57	PHROG	phrog_20016	NA	unknown function
UHGV-0109438_57	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0109438_57	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0109438_58	PHROG	phrog_16490	NA	unknown function
UHGV-0109438_58	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0109438_60	PHROG	phrog_21718	NA	unknown function
UHGV-0109438_60	UniRef90	UniRef90_A0A8D9PDT7	Membrane fusogenic activity protein	NA
UHGV-0109438_60	eggNOG-mapper	476272.RUMHYD_01768	NA	NA
UHGV-0109438_61	UniRef90	UniRef90_A0A8D9PDT6	Transcriptional regulatory protein	NA
UHGV-0109438_62	UniRef90	UniRef90_A0A8D9PDZ2	Insulin receptor	NA
UHGV-0109438_64	PHROG	phrog_4105	NA	unknown function
UHGV-0109438_64	eggNOG-mapper	742733.HMPREF9469_05011	NA	NA
UHGV-0109438_65	UniRef90	UniRef90_R6I1X1	COPII coat assembly protein SEC16 (Protein transport protein SEC16)	NA
UHGV-0109438_65	eggNOG-mapper	552398.HMPREF0866_01159	NA	NA
UHGV-0109438_67	PHROG	phrog_5302	tail protein	tail
UHGV-0109438_67	eggNOG-mapper	665950.HMPREF1025_01337	Phage tail-collar fibre protein	NA
UHGV-0109438_67	COG	COG5301	Phage-related tail fiber protein	NA