UHGV-0109445

Genome information

Genome length 52,416 bps

CDS count 96

Completeness 90.98% (high-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109445
vOTU ID	vOTU-014799
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_251240
BioSample	SAMEA3708810
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	90.98% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	31.01
Jumbo phage	No

Genome content
Genome length	52,416 bps
GC content	48.03%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	96
CDS density	84.79%
Average CDS length	464.94 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109445_1	UniRef90	UniRef90_A0A8F0WD75	RNA polymerase sigma factor/Ubiquitin-like protein	NA
UHGV-0109445_1	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0109445_3	PHROG	phrog_7070	NA	unknown function
UHGV-0109445_3	eggNOG-mapper	1195072.M4HPW0_9CAUD	NA	NA
UHGV-0109445_7	Structural annotation	NF010188	NA	NA
UHGV-0109445_8	Structural annotation	PF07878	NA	NA
UHGV-0109445_10	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0109445_10	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0109445_10	UniRef90	UniRef90_A0A1C6BS15	Sporulation initiation inhibitor protein soj	NA
UHGV-0109445_10	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0109445_10	Pfam	PF13614	AAA domain	AAA_31
UHGV-0109445_10	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0109445_10	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0109445_11	PHROG	phrog_924	NA	unknown function
UHGV-0109445_11	eggNOG-mapper	1205683.CAKR01000013_gene1207	NA	NA
UHGV-0109445_11	Pfam	PF04448	NA	DUF551
UHGV-0109445_11	Structural annotation	NF041588	NA	NA
UHGV-0109445_12	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0109445_12	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0109445_12	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0109445_12	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0109445_12	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0109445_12	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0109445_12	Structural annotation	PF01051, PF21205, NF038290, COG5527	NA	NA
UHGV-0109445_13	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0109445_13	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109445_13	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0109445_13	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0109445_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109445_17	UniRef90	UniRef90_A0A1C6D4U5	Helix-turn-helix domain	NA
UHGV-0109445_17	eggNOG-mapper	693746.OBV_43290	addiction module antidote protein HigA	NA
UHGV-0109445_17	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0109445_17	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0109445_17	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0109445_18	PHROG	phrog_1468	transcriptional repressor	transcription regulation
UHGV-0109445_18	UniRef90	UniRef90_A0A8J6LUU7	XRE family transcriptional regulator	NA
UHGV-0109445_18	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0109445_18	Structural annotation	TIGR03070	NA	NA
UHGV-0109445_19	PHROG	phrog_4652	NA	unknown function
UHGV-0109445_19	UniRef90	UniRef90_A0A0P0DZ87	Cubilin	NA
UHGV-0109445_19	eggNOG-mapper	397290.C810_01459	NA	NA
UHGV-0109445_19	Structural annotation	TIGR02582, COG1604	NA	NA
UHGV-0109445_20	PHROG	phrog_15946	NA	unknown function
UHGV-0109445_20	eggNOG-mapper	1041147.AUFB01000014_gene330	NA	NA
UHGV-0109445_21	Structural annotation	PF10922	NA	NA
UHGV-0109445_22	Structural annotation	TIGR03826	NA	NA
UHGV-0109445_24	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0109445_24	Structural annotation	PF13443, TIGR02684, COG1476	NA	NA
UHGV-0109445_25	Structural annotation	PF14143	NA	NA
UHGV-0109445_26	eggNOG-mapper	272623.L157023	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes	NA
UHGV-0109445_26	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0109445_26	Structural annotation	PF04606, NF007241, COG3478	NA	NA
UHGV-0109445_27	PHROG	phrog_38771	NA	unknown function
UHGV-0109445_29	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0109445_29	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0109445_29	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0109445_29	Pfam	PF04404	ERF superfamily	ERF
UHGV-0109445_29	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0109445_30	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0109445_30	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0109445_30	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0109445_30	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0109445_30	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0109445_30	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0109445_30	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0109445_30	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0109445_30	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0109445_31	PHROG	phrog_4572	NA	unknown function
UHGV-0109445_31	eggNOG-mapper	397288.C806_00091	NA	NA
UHGV-0109445_32	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0109445_32	UniRef90	UniRef90_UPI001C00B13F	DNA cytosine methyltransferase	NA
UHGV-0109445_32	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0109445_32	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0109445_32	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-0109445_34	PHROG	phrog_35094	NA	unknown function
UHGV-0109445_34	eggNOG-mapper	457424.BFAG_02409	NA	NA
UHGV-0109445_36	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0109445_36	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0109445_36	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0109445_36	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0109445_38	Structural annotation	PF11998, COG5420	NA	NA
UHGV-0109445_42	PHROG	phrog_1934	NA	unknown function
UHGV-0109445_42	UniRef90	UniRef90_UPI001F1E6864	NA	NA
UHGV-0109445_42	eggNOG-mapper	718252.FP2_01030	COG NOG19595 non supervised orthologous group	NA
UHGV-0109445_42	Pfam	PF11672	zinc-finger-containing domain	DUF3268
UHGV-0109445_42	Structural annotation	PF11672	NA	NA
UHGV-0109445_43	Structural annotation	PF16677	NA	NA
UHGV-0109445_44	UniRef90	UniRef90_UPI0012DD33A2	restriction endonuclease subunit M	NA
UHGV-0109445_44	eggNOG-mapper	1121333.JMLH01000037_gene2007	restriction endonuclease	NA
UHGV-0109445_44	PADLOC	MTase_II_00176	Type II methyltransferase	RM
UHGV-0109445_44	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-0109445_45	PHROG	phrog_3136	NA	unknown function
UHGV-0109445_45	UniRef90	UniRef90_UPI001CBCD733	ASCH domain-containing protein	NA
UHGV-0109445_45	eggNOG-mapper	394503.Ccel_3165	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0109445_45	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0109445_45	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0109445_51	Structural annotation	NF041588	NA	NA
UHGV-0109445_54	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0109445_54	Structural annotation	PF14354	NA	NA
UHGV-0109445_55	PHROG	phrog_15768	NA	unknown function
UHGV-0109445_55	UniRef90	UniRef90_A0A6N7WKT0	NA	NA
UHGV-0109445_55	eggNOG-mapper	748224.HMPREF9436_03357	NA	NA
UHGV-0109445_55	Pfam	PF19808	NA	DUF6291
UHGV-0109445_55	Structural annotation	PF19808	NA	NA
UHGV-0109445_56	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0109445_56	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0109445_56	UniRef90	UniRef90_UPI001CBC4B63	AAA family ATPase	NA
UHGV-0109445_56	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0109445_56	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0109445_56	COG	COG0305	Replicative DNA helicase	NA
UHGV-0109445_56	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0109445_57	PHROG	phrog_1709	NA	unknown function
UHGV-0109445_57	eggNOG-mapper	1280686.AUKE01000002_gene1328	NA	NA
UHGV-0109445_60	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0109445_61	PHROG	phrog_15551	NA	unknown function
UHGV-0109445_61	UniRef90	UniRef90_E1A234	LPD11 domain-containing protein	NA
UHGV-0109445_61	eggNOG-mapper	879630.E1A234_9CAUD	NA	NA
UHGV-0109445_61	Pfam	PF18824	Large polyvalent protein-associated domain 11	LPD11
UHGV-0109445_61	Structural annotation	PF18824	NA	NA
UHGV-0109445_65	Structural annotation	PF09624, PF14263, MF_00791, NF038353, TIGR02588, COG4885	NA	NA
UHGV-0109445_67	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0109445_67	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0109445_67	UniRef90	UniRef90_A0A4Y5FE84	Antirepressor	NA
UHGV-0109445_67	eggNOG-mapper	947981.E9LUT0_9CAUD	DNA binding	NA
UHGV-0109445_67	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0109445_67	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0109445_67	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0109445_67	Structural annotation	PF09669, PF03374, TIGR02681, COG3646, COG3645	NA	NA
UHGV-0109445_68	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0109445_70	Structural annotation	PF20075	NA	NA
UHGV-0109445_71	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0109445_71	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0109445_71	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0109445_71	eggNOG-mapper	1410633.JHWR01000012_gene95	Resolvase, N terminal domain	NA
UHGV-0109445_71	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0109445_71	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0109445_71	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0109445_74	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0109445_74	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0109445_74	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0109445_74	COG	COG5410	NA	NA
UHGV-0109445_74	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0109445_76	PHROG	phrog_64	portal protein	head and packaging
UHGV-0109445_76	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0109445_76	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0109445_76	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0109445_76	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0109445_77	eggNOG-mapper	1064535.MELS_1945	NA	NA
UHGV-0109445_80	PHROG	phrog_29	major head protein	head and packaging
UHGV-0109445_80	UniRef90	UniRef90_A0A2Z4QBB4	Major capsid protein E	NA
UHGV-0109445_80	eggNOG-mapper	1347368.HG964404_gene4993	Phage major capsid protein E	NA
UHGV-0109445_80	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0109445_80	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0109445_81	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0109445_81	Structural annotation	TIGR01560	NA	NA
UHGV-0109445_82	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0109445_82	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0109445_83	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0109445_84	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0109445_85	UniRef90	UniRef90_UPI001D06C8CA	phage tail protein	NA
UHGV-0109445_85	eggNOG-mapper	1449342.JQMR01000001_gene990	Phage tail tube protein, TTP	NA
UHGV-0109445_85	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0109445_86	UniRef90	UniRef90_A0A496N7D3	NA	NA
UHGV-0109445_86	eggNOG-mapper	1123263.AUKY01000015_gene1618	NA	NA
UHGV-0109445_86	Pfam	PF16478	NA	DUF5055
UHGV-0109445_86	Structural annotation	PF16478	NA	NA
UHGV-0109445_87	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0109445_88	PHROG	phrog_28775	tail length tape measure protein	tail
UHGV-0109445_88	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0109445_88	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0109445_89	PHROG	phrog_1194	NA	unknown function
UHGV-0109445_89	Pfam	PF20458	NA	DUF6711
UHGV-0109445_89	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0109445_90	PHROG	phrog_13879	NA	unknown function
UHGV-0109445_90	UniRef90	UniRef90_A0A843H6J9	Dockerin type I repeat-containing protein	NA
UHGV-0109445_90	eggNOG-mapper	324057.Pjdr2_1554	NA	NA
UHGV-0109445_90	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0109445_91	PHROG	phrog_18725	NA	unknown function
UHGV-0109445_91	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0109445_92	PHROG	phrog_3279	tail fiber protein	tail
UHGV-0109445_93	PHROG	phrog_24267	NA	unknown function
UHGV-0109445_93	UniRef90	UniRef90_R5LPM8	Putative truncated prophage LambdaSa1 minor structural protein	NA
UHGV-0109445_93	eggNOG-mapper	742742.HMPREF9452_00376	tail collar domain protein	NA
UHGV-0109445_93	COG	COG4675	Phage tail collar domain	NA
UHGV-0109445_94	UniRef90	UniRef90_R7KBG5	Conserved domain protein	NA
UHGV-0109445_95	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0109445_95	Structural annotation	NF040910	NA	NA
UHGV-0109445_96	KOfam	K07273	acm; lysozyme	NA
UHGV-0109445_96	PHROG	phrog_291	endolysin	lysis
UHGV-0109445_96	UniRef90	UniRef90_A0A3D4VZ42	Endolysin (Fragment)	NA
UHGV-0109445_96	eggNOG-mapper	411483.FAEPRAA2165_00002	hydrolase, family 25	NA
UHGV-0109445_96	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0109445_96	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA