UHGV-0109497

Genome information

Genome length 32,803 bps

CDS count 47

Completeness 72.72% (medium-quality)

geNomad score 0.9757

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109497
vOTU ID	vOTU-038132
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_245022
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	72.72% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	27
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9757
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	57.29
Jumbo phage	No

Genome content
Genome length	32,803 bps
GC content	56.47%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	47
CDS density	93.83%
Average CDS length	659.43 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109497_2	KOfam	K14059	int; integrase	NA
UHGV-0109497_2	PHROG	phrog_1	integrase	integration and excision
UHGV-0109497_2	UniRef90	UniRef90_A0A3E2XZ68	Site-specific integrase	NA
UHGV-0109497_2	eggNOG-mapper	1203606.HMPREF1526_02099	Belongs to the 'phage' integrase family	NA
UHGV-0109497_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0109497_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0109497_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0109497_2	Structural annotation	PF00589, MF_01808, NF002331, COG4973	NA	NA
UHGV-0109497_3	eggNOG-mapper	1286171.EAL2_c05530	NA	NA
UHGV-0109497_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0109497_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0109497_4	UniRef90	UniRef90_A0A417ISZ5	Helix-turn-helix domain-containing protein	NA
UHGV-0109497_4	eggNOG-mapper	1123230.ARQJ01000006_gene2611	Peptidase S24-like	NA
UHGV-0109497_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109497_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0109497_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0109497_4	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-0109497_5	UniRef90	UniRef90_A0A417IT45	NA	NA
UHGV-0109497_5	eggNOG-mapper	562981.HMPREF0428_01421	NA	NA
UHGV-0109497_5	Pfam	PF05339	NA	DUF739
UHGV-0109497_5	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0109497_5	Structural annotation	PF05339, NF002773, COG1476	NA	NA
UHGV-0109497_6	Structural annotation	PF11112	NA	NA
UHGV-0109497_9	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-0109497_9	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109497_9	UniRef90	UniRef90_UPI001D0E8FB8	AAA family ATPase	NA
UHGV-0109497_9	eggNOG-mapper	1203606.HMPREF1526_00309	nuclear chromosome segregation	NA
UHGV-0109497_9	Pfam	PF13476	AAA domain	AAA_23
UHGV-0109497_9	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0109497_9	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0109497_10	PHROG	phrog_862	NA	unknown function
UHGV-0109497_10	eggNOG-mapper	279238.Saro_3022	NA	NA
UHGV-0109497_10	Structural annotation	PF05037, COG2965	NA	NA
UHGV-0109497_11	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0109497_11	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0109497_11	UniRef90	UniRef90_A0A3E2XZ56	MBL fold metallo-hydrolase	NA
UHGV-0109497_11	eggNOG-mapper	1203606.HMPREF1526_00311	Metallo-beta-lactamase superfamily	NA
UHGV-0109497_11	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0109497_11	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0109497_11	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0109497_13	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0109497_13	UniRef90	UniRef90_A0A316QIB2	Replication terminator protein	NA
UHGV-0109497_13	eggNOG-mapper	889378.Spiaf_1591	NA	NA
UHGV-0109497_14	PHROG	phrog_1029	NA	unknown function
UHGV-0109497_14	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0109497_14	eggNOG-mapper	1298920.KI911353_gene2718	NA	NA
UHGV-0109497_14	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0109497_15	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0109497_15	UniRef90	UniRef90_A0A3E2XXV5	NA	NA
UHGV-0109497_15	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0109497_15	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0109497_15	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0109497_16	UniRef90	UniRef90_UPI001C0154AC	CFAP298 family protein	NA
UHGV-0109497_16	Pfam	PF13936	Helix-turn-helix domain	HTH_38
UHGV-0109497_16	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0109497_16	Structural annotation	PF19575, PF06056, NF040595	NA	NA
UHGV-0109497_21	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0109497_21	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0109497_21	UniRef90	UniRef90_UPI001C028A15	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0109497_21	eggNOG-mapper	1408437.JNJN01000032_gene2312	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0109497_21	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0109497_21	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0109497_21	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0109497_21	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0109497_23	PHROG	phrog_478	site-specific recombination directionality factor RDF	integration and excision
UHGV-0109497_23	UniRef90	UniRef90_R6R5K5	Protein 64 protein	NA
UHGV-0109497_23	eggNOG-mapper	478749.BRYFOR_08526	NA	NA
UHGV-0109497_24	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0109497_24	UniRef90	UniRef90_A0A7X7XZK5	NA	NA
UHGV-0109497_24	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-0109497_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0109497_24	Structural annotation	PF07374, MF_00674, TIGR02984, COG2739	NA	NA
UHGV-0109497_25	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0109497_25	UniRef90	UniRef90_A0A417BYR0	Helix-turn-helix domain-containing protein	NA
UHGV-0109497_25	eggNOG-mapper	1408437.JNJN01000045_gene597	HNH endonuclease	NA
UHGV-0109497_25	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0109497_25	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0109497_25	Structural annotation	PF07141	NA	NA
UHGV-0109497_26	PHROG	phrog_30251	terminase large subunit	head and packaging
UHGV-0109497_26	UniRef90	UniRef90_A0A845MZ56	Phage terminase large subunit	NA
UHGV-0109497_26	eggNOG-mapper	1408437.JNJN01000045_gene596	TIGRFAM Phage	NA
UHGV-0109497_26	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0109497_26	COG	COG5410	NA	NA
UHGV-0109497_26	Structural annotation	PF17289, PF03237, MF_04147, NF033889, COG5410, COG5362	NA	NA
UHGV-0109497_27	PHROG	phrog_64	portal protein	head and packaging
UHGV-0109497_27	UniRef90	UniRef90_A0A417BZ11	Phage portal protein	NA
UHGV-0109497_27	eggNOG-mapper	1408437.JNJN01000045_gene595	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0109497_27	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0109497_27	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-0109497_27	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0109497_28	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0109497_28	UniRef90	UniRef90_A0A3E2XXY5	Phage_Mu_F domain-containing protein	NA
UHGV-0109497_28	eggNOG-mapper	1408437.JNJN01000045_gene594	head morphogenesis protein, SPP1 gp7 family	NA
UHGV-0109497_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0109497_28	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0109497_28	COG	COG2369	NA	NA
UHGV-0109497_28	Structural annotation	PF04233, PF18825, TIGR01641, COG2369	NA	NA
UHGV-0109497_29	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0109497_29	UniRef90	UniRef90_UPI0004E27E71	phage scaffolding protein	NA
UHGV-0109497_29	eggNOG-mapper	1408437.JNJN01000045_gene593	Phage minor structural protein GP20	NA
UHGV-0109497_29	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0109497_29	Structural annotation	PF06810	NA	NA
UHGV-0109497_30	PHROG	phrog_212	major head protein	head and packaging
UHGV-0109497_30	UniRef90	UniRef90_A0A3E2XZN2	Phage capsid protein	NA
UHGV-0109497_30	eggNOG-mapper	1408437.JNJN01000045_gene592	NA	NA
UHGV-0109497_30	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0109497_31	eggNOG-mapper	935836.JAEL01000086_gene51	NA	NA
UHGV-0109497_32	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0109497_32	UniRef90	UniRef90_A0A6N2R673	Phage gp6-like head-tail connector protein	NA
UHGV-0109497_32	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-0109497_32	Structural annotation	PF05135	NA	NA
UHGV-0109497_33	PHROG	phrog_615	head-tail adaptor	connector
UHGV-0109497_33	UniRef90	UniRef90_UPI001F0965FE	ABC transporter ATP-binding protein	NA
UHGV-0109497_33	eggNOG-mapper	1408437.JNJN01000045_gene589	NA	NA
UHGV-0109497_33	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-0109497_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0109497_34	UniRef90	UniRef90_A0A3E2XZ40	HK97 gp10 family phage protein	NA
UHGV-0109497_34	eggNOG-mapper	743719.PaelaDRAFT_2404	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0109497_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0109497_34	Structural annotation	PF04883, TIGR01725, COG5005	NA	NA
UHGV-0109497_35	PHROG	phrog_525	NA	unknown function
UHGV-0109497_35	UniRef90	UniRef90_T3D6E7	Putative phage protein	NA
UHGV-0109497_35	eggNOG-mapper	1408437.JNJN01000045_gene587	NA	NA
UHGV-0109497_35	Pfam	PF20765	NA	DUF6838
UHGV-0109497_35	Structural annotation	PF20765, COG5003	NA	NA
UHGV-0109497_36	PHROG	phrog_966	NA	unknown function
UHGV-0109497_36	eggNOG-mapper	1408437.JNJN01000045_gene586	NA	NA
UHGV-0109497_37	PHROG	phrog_279	tail sheath	tail
UHGV-0109497_37	UniRef90	UniRef90_A0A3E2XXT6	Phage tail protein	NA
UHGV-0109497_37	eggNOG-mapper	1408437.JNJN01000045_gene585	Phage tail sheath C-terminal domain	NA
UHGV-0109497_37	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-0109497_37	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0109497_37	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0109497_37	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-0109497_38	PHROG	phrog_365	tail protein	tail
UHGV-0109497_38	UniRef90	UniRef90_UPI00164A7994	phage tail tube protein	NA
UHGV-0109497_38	eggNOG-mapper	1408437.JNJN01000045_gene584	Phage tail tube protein	NA
UHGV-0109497_38	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-0109497_38	Structural annotation	PF09393, TIGR02241, COG3498	NA	NA
UHGV-0109497_39	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-0109497_39	UniRef90	UniRef90_A0A3E2XXX4	Phage portal protein	NA
UHGV-0109497_39	eggNOG-mapper	1408437.JNJN01000045_gene583	Phage XkdN-like tail assembly chaperone protein, TAC	NA
UHGV-0109497_39	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-0109497_39	Structural annotation	PF08890, COG4518	NA	NA
UHGV-0109497_40	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-0109497_40	UniRef90	UniRef90_A0A417BYU2	TMP_3 domain-containing protein	NA
UHGV-0109497_40	eggNOG-mapper	1408437.JNJN01000045_gene581	tape measure	NA
UHGV-0109497_40	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0109497_40	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0109497_40	COG	COG5281	Phage-related minor tail protein	NA
UHGV-0109497_40	Structural annotation	PF20155, COG3941	NA	NA
UHGV-0109497_41	PHROG	phrog_380	endolysin	lysis
UHGV-0109497_41	UniRef90	UniRef90_A0A417HNW8	LysM domain-containing protein	NA
UHGV-0109497_41	eggNOG-mapper	1408437.JNJN01000045_gene580	LysM domain	NA
UHGV-0109497_41	Pfam	PF01476	LysM domain	LysM
UHGV-0109497_41	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA
UHGV-0109497_41	Structural annotation	PF21821, TIGR02126, COG3499	NA	NA
UHGV-0109497_42	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0109497_42	PHROG	phrog_400	tail protein	tail
UHGV-0109497_42	UniRef90	UniRef90_A0A417IT88	Peptidase_M23 domain-containing protein	NA
UHGV-0109497_42	eggNOG-mapper	1408437.JNJN01000045_gene579	PFAM Phage late control gene D protein (GPD)	NA
UHGV-0109497_42	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0109497_42	COG	COG4193	Beta- N-acetylglucosaminidase	NA
UHGV-0109497_42	Structural annotation	PF01551, PF05954, MF_02071, NF040883, NF033848, TIGR00413, COG0739, COG4379, COG3584	NA	NA
UHGV-0109497_43	PHROG	phrog_579	NA	unknown function
UHGV-0109497_43	UniRef90	UniRef90_A0A417TSE7	NA	NA
UHGV-0109497_43	eggNOG-mapper	1567012.A0A0A7RTJ2_9VIRU	NA	NA
UHGV-0109497_43	Pfam	PF10844	NA	DUF2577
UHGV-0109497_43	Structural annotation	PF10844	NA	NA
UHGV-0109497_44	PHROG	phrog_120	baseplate protein	tail
UHGV-0109497_44	UniRef90	UniRef90_A0A3E2XZ30	NA	NA
UHGV-0109497_44	eggNOG-mapper	1408437.JNJN01000045_gene577	NA	NA
UHGV-0109497_44	Pfam	PF10934	NA	DUF2634
UHGV-0109497_44	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0109497_44	Structural annotation	PF10934, TIGR03357, COG3628	NA	NA
UHGV-0109497_45	PHROG	phrog_1608	tail protein	tail
UHGV-0109497_45	UniRef90	UniRef90_A0A3E2XXS7	Phage tail protein	NA
UHGV-0109497_45	eggNOG-mapper	1408437.JNJN01000045_gene576	Baseplate J-like protein	NA
UHGV-0109497_45	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0109497_45	COG	COG3299	NA	NA
UHGV-0109497_45	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0109497_46	PHROG	phrog_521	tail protein	tail
UHGV-0109497_46	UniRef90	UniRef90_A0A396Q625	NA	NA
UHGV-0109497_46	eggNOG-mapper	1408437.JNJN01000045_gene575	NA	NA
UHGV-0109497_46	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0109497_46	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0109497_46	Structural annotation	PF10076, TIGR02242, COG3778	NA	NA