UHGV-0109522

Genome information

Genome length 42,527 bps

CDS count 69

Completeness 96.24% (high-quality)

geNomad score 0.9715

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109522
vOTU ID	vOTU-067793
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_251273
BioSample	SAMEA3708810
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	96.24% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	26
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9715
Virus hallmark genes (geNomad)	16
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.53
Jumbo phage	No

Genome content
Genome length	42,527 bps
GC content	43.45%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	69
CDS density	90.31%
Average CDS length	562.52 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109522_1	PHROG	phrog_2655	excisionase	integration and excision
UHGV-0109522_1	UniRef90	UniRef90_A0A413QU59	HTH_59 domain-containing protein	NA
UHGV-0109522_1	eggNOG-mapper	1111454.HMPREF1250_0298	NA	NA
UHGV-0109522_1	Pfam	PF20038	Helix-turn-helix domain	HTH_59
UHGV-0109522_1	Structural annotation	PF20038, TIGR01764	NA	NA
UHGV-0109522_4	PHROG	phrog_18996	NA	unknown function
UHGV-0109522_4	eggNOG-mapper	864563.HMPREF9166_1229	NA	NA
UHGV-0109522_5	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0109522_5	PHROG	phrog_435	endolysin	lysis
UHGV-0109522_5	UniRef90	UniRef90_UPI00073F3E30	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0109522_5	eggNOG-mapper	1273103.NM10_01663	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0109522_5	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0109522_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0109522_5	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0109522_6	PHROG	phrog_199	holin	lysis
UHGV-0109522_6	UniRef90	UniRef90_G0VPG2	Prophage LambdaSa04 protein	NA
UHGV-0109522_6	eggNOG-mapper	1064535.MELS_1118	Bacteriophage holin family	NA
UHGV-0109522_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0109522_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0109522_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0109522_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0109522_9	KOfam	K14059	int; integrase	NA
UHGV-0109522_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0109522_9	UniRef90	UniRef90_UPI00073F14CF	site-specific integrase	NA
UHGV-0109522_9	eggNOG-mapper	1273103.NM10_01678	Phage integrase family	NA
UHGV-0109522_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0109522_9	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0109522_9	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0109522_13	eggNOG-mapper	1273103.NM10_08099	NA	NA
UHGV-0109522_13	Structural annotation	NF012201	NA	NA
UHGV-0109522_14	PHROG	phrog_31660	tail fiber protein	tail
UHGV-0109522_14	UniRef90	UniRef90_A0A1G9QX40	Mtd_N domain-containing protein	NA
UHGV-0109522_14	eggNOG-mapper	1306174.JODP01000006_gene3223	NA	NA
UHGV-0109522_14	Pfam	PF18454	Major tropism determinant N-terminal domain	Mtd_N
UHGV-0109522_14	Structural annotation	PF18454	NA	NA
UHGV-0109522_15	PHROG	phrog_2824	virion structural protein	head and packaging
UHGV-0109522_15	eggNOG-mapper	679935.Alfi_2723	exo-alpha-(2->6)-sialidase activity	NA
UHGV-0109522_15	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-0109522_16	eggNOG-mapper	1273103.NM10_08079	NA	NA
UHGV-0109522_16	Structural annotation	PF10651, NF038186	NA	NA
UHGV-0109522_17	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0109522_17	UniRef90	UniRef90_UPI00073E2901	phage tail protein	NA
UHGV-0109522_17	eggNOG-mapper	1273103.NM10_08074	Phage tail-collar fibre protein	NA
UHGV-0109522_17	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0109522_17	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0109522_17	Structural annotation	PF12571	NA	NA
UHGV-0109522_18	PHROG	phrog_48	tail protein	tail
UHGV-0109522_18	UniRef90	UniRef90_UPI00073F9104	phage tail protein I	NA
UHGV-0109522_18	eggNOG-mapper	1273103.NM10_08069	Phage tail protein (Tail_P2_I)	NA
UHGV-0109522_18	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0109522_18	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0109522_18	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0109522_18	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0109522_19	PHROG	phrog_6	baseplate protein	tail
UHGV-0109522_19	UniRef90	UniRef90_UPI00073F5EDC	baseplate J/gp47 family protein	NA
UHGV-0109522_19	eggNOG-mapper	1273103.NM10_08064	Baseplate J-like protein	NA
UHGV-0109522_19	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0109522_19	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0109522_19	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0109522_20	KOfam	K06903	NA	NA
UHGV-0109522_20	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0109522_20	UniRef90	UniRef90_UPI00073E7AC3	GPW/gp25 family protein	NA
UHGV-0109522_20	eggNOG-mapper	1064535.MELS_1110	GPW Gp25 family protein	NA
UHGV-0109522_20	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0109522_20	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0109522_20	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0109522_21	KOfam	K06906	NA	NA
UHGV-0109522_21	PHROG	phrog_76	tail protein	tail
UHGV-0109522_21	UniRef90	UniRef90_UPI00073E6B6B	phage tail protein	NA
UHGV-0109522_21	eggNOG-mapper	1064535.MELS_1109	Phage P2 GpU	NA
UHGV-0109522_21	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0109522_21	COG	COG3499	NA	NA
UHGV-0109522_21	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0109522_22	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0109522_22	UniRef90	UniRef90_UPI0009F81E55	phage baseplate assembly protein	NA
UHGV-0109522_22	eggNOG-mapper	1273103.NM10_08049	Phage baseplate assembly protein V	NA
UHGV-0109522_22	Pfam	PF18946	GpV Apex motif	Apex
UHGV-0109522_22	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0109522_22	Structural annotation	PF05606, MF_00216, TIGR01644, COG4540	NA	NA
UHGV-0109522_23	KOfam	K06905	NA	NA
UHGV-0109522_23	PHROG	phrog_52	tail protein	tail
UHGV-0109522_23	UniRef90	UniRef90_UPI001CD5459F	transcriptional regulator	NA
UHGV-0109522_23	eggNOG-mapper	1273103.NM10_08044	COG3500 Phage protein D	NA
UHGV-0109522_23	COG	COG3500	NA	NA
UHGV-0109522_23	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0109522_24	PHROG	phrog_46	tail protein	tail
UHGV-0109522_24	UniRef90	UniRef90_UPI00073F972F	tail protein X	NA
UHGV-0109522_24	eggNOG-mapper	411463.EUBVEN_00435	Phage Tail Protein X	NA
UHGV-0109522_24	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0109522_24	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0109522_24	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0109522_25	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0109522_25	UniRef90	UniRef90_UPI000ACA7156	phage tail tape measure protein	NA
UHGV-0109522_25	eggNOG-mapper	1064535.MELS_1105	Phage-related minor tail protein	NA
UHGV-0109522_25	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0109522_25	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0109522_25	COG	COG5283	Phage-related tail protein	NA
UHGV-0109522_25	Structural annotation	PF10145, MF_04138, TIGR01760, COG5280	NA	NA
UHGV-0109522_27	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0109522_27	UniRef90	UniRef90_UPI001E3696E8	phage tail assembly protein	NA
UHGV-0109522_27	eggNOG-mapper	349161.Dred_1214	NA	NA
UHGV-0109522_27	Structural annotation	PF10109	NA	NA
UHGV-0109522_28	KOfam	K06908	NA	NA
UHGV-0109522_28	PHROG	phrog_55	head closure	connector
UHGV-0109522_28	UniRef90	UniRef90_UPI00073F2DD0	phage major tail tube protein	NA
UHGV-0109522_28	eggNOG-mapper	1064535.MELS_1103	tail tube protein	NA
UHGV-0109522_28	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0109522_28	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0109522_28	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0109522_29	KOfam	K06907	NA	NA
UHGV-0109522_29	PHROG	phrog_23	tail sheath	tail
UHGV-0109522_29	UniRef90	UniRef90_UPI00073F1176	phage tail protein	NA
UHGV-0109522_29	eggNOG-mapper	1064535.MELS_1102	COG3497 Phage tail sheath protein FI	NA
UHGV-0109522_29	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0109522_29	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0109522_30	eggNOG-mapper	1262914.BN533_01006	Product inferred by homology to UniProt	NA
UHGV-0109522_31	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0109522_31	eggNOG-mapper	1064535.MELS_1100	NA	NA
UHGV-0109522_31	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0109522_32	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0109522_32	UniRef90	UniRef90_UPI0018CF00C8	phage tail protein	NA
UHGV-0109522_32	eggNOG-mapper	97139.C824_00707	Prophage minor tail protein Z (GPZ)	NA
UHGV-0109522_32	Structural annotation	PF06763	NA	NA
UHGV-0109522_33	PHROG	phrog_2551	minor tail protein	tail
UHGV-0109522_33	UniRef90	UniRef90_A0A127SL33	ATP-binding sugar transporter from pro-phage	NA
UHGV-0109522_33	eggNOG-mapper	1273103.NM10_02242	NA	NA
UHGV-0109522_33	Structural annotation	PF13856	NA	NA
UHGV-0109522_35	PHROG	phrog_29	major head protein	head and packaging
UHGV-0109522_35	UniRef90	UniRef90_UPI00073E3456	major capsid protein	NA
UHGV-0109522_35	eggNOG-mapper	1064535.MELS_1096	Phage major capsid protein E	NA
UHGV-0109522_35	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0109522_35	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-0109522_36	PHROG	phrog_49	head decoration	head and packaging
UHGV-0109522_36	UniRef90	UniRef90_UPI00073F9C7C	head decoration protein	NA
UHGV-0109522_36	eggNOG-mapper	1064535.MELS_1095	Bacteriophage lambda head decoration protein D	NA
UHGV-0109522_36	Pfam	PF02924	Bacteriophage lambda head decoration protein D	HDPD
UHGV-0109522_36	Structural annotation	PF02924, COG5471	NA	NA
UHGV-0109522_37	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0109522_37	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0109522_37	UniRef90	UniRef90_UPI00073EB35F	Clp protease ClpP	NA
UHGV-0109522_37	eggNOG-mapper	1064535.MELS_1094	Clp protease	NA
UHGV-0109522_37	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0109522_37	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0109522_37	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0109522_38	PHROG	phrog_21	portal protein	head and packaging
UHGV-0109522_38	UniRef90	UniRef90_UPI00073F54DB	phage portal protein	NA
UHGV-0109522_38	eggNOG-mapper	1064535.MELS_1093	Phage portal protein	NA
UHGV-0109522_38	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0109522_38	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0109522_38	COG	COG5511	Phage capsid protein	NA
UHGV-0109522_38	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0109522_39	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0109522_39	UniRef90	UniRef90_UPI00073EF5B2	NA	NA
UHGV-0109522_39	eggNOG-mapper	936573.HMPREF1147_1716	NA	NA
UHGV-0109522_39	Pfam	PF19645	NA	DUF6148
UHGV-0109522_39	Structural annotation	PF19645	NA	NA
UHGV-0109522_40	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0109522_40	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0109522_40	UniRef90	UniRef90_A0A2S0M817	Terminase	NA
UHGV-0109522_40	eggNOG-mapper	1064535.MELS_1091	Phage terminase large subunit (GpA)	NA
UHGV-0109522_40	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0109522_40	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0109522_40	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0109522_40	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0109522_40	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0109522_41	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0109522_41	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0109522_41	UniRef90	UniRef90_A0A1M7YBS6	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0109522_41	eggNOG-mapper	1273103.NM10_02282	NA	NA
UHGV-0109522_41	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0109522_41	Structural annotation	PF07471, NF040990, COG4220	NA	NA
UHGV-0109522_42	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0109522_42	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0109522_43	PHROG	phrog_37395	NA	unknown function
UHGV-0109522_44	PHROG	phrog_32878	NA	unknown function
UHGV-0109522_44	Pfam	PF04448	NA	DUF551
UHGV-0109522_44	Structural annotation	NF041588	NA	NA
UHGV-0109522_46	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0109522_46	UniRef90	UniRef90_UPI000930BD90	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0109522_46	eggNOG-mapper	1226322.HMPREF1545_04070	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0109522_46	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0109522_46	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0109522_47	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0109522_47	eggNOG-mapper	1232428.CAVO010000003_gene1017	NA	NA
UHGV-0109522_47	Structural annotation	PF21578	NA	NA
UHGV-0109522_49	PHROG	phrog_15609	NA	unknown function
UHGV-0109522_49	UniRef90	UniRef90_UPI00073F64A5	NA	NA
UHGV-0109522_49	eggNOG-mapper	1232428.CAVO010000003_gene1018	NA	NA
UHGV-0109522_49	Pfam	PF11300	NA	DUF3102
UHGV-0109522_49	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0109522_49	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0109522_50	PHROG	phrog_8470	NA	unknown function
UHGV-0109522_50	UniRef90	UniRef90_UPI00073F3B84	PcfJ domain-containing protein	NA
UHGV-0109522_50	eggNOG-mapper	717606.PaecuDRAFT_3105	PcfJ-like protein	NA
UHGV-0109522_50	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0109522_52	PHROG	phrog_355	nucleoside 2-deoxyribosyltransferase	DNA, RNA and nucleotide metabolism
UHGV-0109522_52	UniRef90	UniRef90_UPI00082C1C00	NA	NA
UHGV-0109522_52	eggNOG-mapper	592028.GCWU000321_01357	NA	NA
UHGV-0109522_57	PHROG	phrog_1672	NA	unknown function
UHGV-0109522_57	UniRef90	UniRef90_S7HT72	NA	NA
UHGV-0109522_58	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109522_58	UniRef90	UniRef90_A0A2S0M9E4	HNH endonuclease	NA
UHGV-0109522_58	eggNOG-mapper	585503.HMPREF7545_1722	HNH endonuclease	NA
UHGV-0109522_58	Pfam	PF14279	HNH endonuclease	HNH_5
UHGV-0109522_58	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0109522_63	eggNOG-mapper	1027292.HMPREF9372_3404	NA	NA
UHGV-0109522_63	Structural annotation	PF11614, NF041740, COG5066	NA	NA
UHGV-0109522_65	UniRef90	UniRef90_UPI001412A513	helix-turn-helix transcriptional regulator	NA
UHGV-0109522_65	eggNOG-mapper	1211817.CCAT010000053_gene2103	Helix-turn-helix	NA
UHGV-0109522_65	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0109522_65	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0109522_66	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0109522_66	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109522_66	UniRef90	UniRef90_UPI001AE9F70F	helix-turn-helix domain-containing protein	NA
UHGV-0109522_66	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-0109522_66	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109522_66	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0109522_66	Structural annotation	PF01381, MF_00535, NF007257, COG1396	NA	NA
UHGV-0109522_68	UniRef90	UniRef90_A0A6N7W2D5	SWIM-type domain-containing protein	NA
UHGV-0109522_68	eggNOG-mapper	525254.HMPREF0072_1328	Swim zinc finger domain protein	NA
UHGV-0109522_69	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0109522_69	PHROG	phrog_95	integrase	integration and excision
UHGV-0109522_69	UniRef90	UniRef90_UPI0008A8C8AE	recombinase family protein	NA
UHGV-0109522_69	eggNOG-mapper	706434.HMPREF9429_00560	overlaps another CDS with the same product name	NA
UHGV-0109522_69	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0109522_69	Pfam	PF07508	Recombinase	Recombinase
UHGV-0109522_69	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0109522_69	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0109522_69	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA