UHGV-0109531

Genome information

Genome length 43,498 bps

CDS count 75

Completeness 99.90% (high-quality)

geNomad score 0.9797

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109531
vOTU ID	vOTU-062738
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_240011
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9797
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	42.78
Jumbo phage	No

Genome content
Genome length	43,498 bps
GC content	39.02%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	75
CDS density	91.42%
Average CDS length	535.40 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109531_2	PHROG	phrog_20593	NA	unknown function
UHGV-0109531_4	PHROG	phrog_874	NA	unknown function
UHGV-0109531_4	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0109531_4	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0109531_4	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0109531_6	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0109531_6	UniRef90	UniRef90_A0A2H4JC51	Putative 3'-phosphoadenosine 5'-phosphosulfatesulfotransferase/FAD synthetase-related enzyme	NA
UHGV-0109531_6	eggNOG-mapper	693746.OBV_43240	NA	NA
UHGV-0109531_6	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0109531_6	Structural annotation	PF01507, MF_00064, TIGR00434, COG0175	NA	NA
UHGV-0109531_7	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0109531_7	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0109531_7	UniRef90	UniRef90_A0A1Q6KI63	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0109531_7	eggNOG-mapper	397290.C810_05213	C-5 cytosine-specific DNA methylase	NA
UHGV-0109531_7	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0109531_7	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0109531_7	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0109531_7	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0109531_7	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0109531_8	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0109531_8	PHROG	phrog_17284	NA	unknown function
UHGV-0109531_8	UniRef90	UniRef90_A0A412KFA2	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0109531_8	eggNOG-mapper	482234.SCAZ3_10455	C-5 cytosine-specific DNA methylase	NA
UHGV-0109531_8	PADLOC	oMTase_00023	orphan methyltransferase	RM
UHGV-0109531_8	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0109531_8	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0109531_9	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0109531_9	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0109531_9	UniRef90	UniRef90_A0A1Q6KUL6	PAPS_reduct domain-containing protein	NA
UHGV-0109531_9	eggNOG-mapper	1232452.BAIB02000007_gene1640	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0109531_9	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0109531_9	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0109531_9	Structural annotation	PF01507, MF_00063, NF010369, COG0175	NA	NA
UHGV-0109531_12	UniRef90	UniRef90_A0A412KFA7	ABC transporter ATP-binding protein	NA
UHGV-0109531_14	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0109531_14	UniRef90	UniRef90_A0A3R5WW48	XRE family transcriptional regulator	NA
UHGV-0109531_14	eggNOG-mapper	1235799.C818_04243	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0109531_14	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0109531_14	Structural annotation	PF13443, NF000090, COG3655	NA	NA
UHGV-0109531_18	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109531_18	UniRef90	UniRef90_A0A4Q2LHE8	GLYCOSYL_HYDROL_F22_1 domain-containing protein	NA
UHGV-0109531_18	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0109531_19	PHROG	phrog_33130	NA	unknown function
UHGV-0109531_19	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0109531_19	Structural annotation	PF10922	NA	NA
UHGV-0109531_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0109531_20	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0109531_20	UniRef90	UniRef90_A0A3R5WSV0	Terminase_3 domain-containing protein	NA
UHGV-0109531_20	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0109531_20	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0109531_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0109531_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0109531_20	Structural annotation	PF04466, PF17288, PF03592, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0109531_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0109531_21	UniRef90	UniRef90_A0A3R5WTT1	Phage capsid protein	NA
UHGV-0109531_21	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0109531_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0109531_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0109531_23	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0109531_23	eggNOG-mapper	1449050.JNLE01000003_gene3886	NA	NA
UHGV-0109531_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0109531_23	Structural annotation	PF11114	NA	NA
UHGV-0109531_24	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0109531_24	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0109531_24	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-0109531_24	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0109531_24	COG	COG2369	NA	NA
UHGV-0109531_24	Structural annotation	PF06152	NA	NA
UHGV-0109531_26	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0109531_27	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0109531_28	PHROG	phrog_16490	NA	unknown function
UHGV-0109531_28	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0109531_29	PHROG	phrog_20016	NA	unknown function
UHGV-0109531_29	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0109531_29	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0109531_29	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0109531_30	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0109531_31	PHROG	phrog_1233	NA	unknown function
UHGV-0109531_31	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0109531_31	Structural annotation	PF20352, COG2856	NA	NA
UHGV-0109531_33	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0109531_33	UniRef90	UniRef90_UPI000E538A87	phage scaffolding protein	NA
UHGV-0109531_33	eggNOG-mapper	476272.RUMHYD_01775	COG NOG36366 non supervised orthologous group	NA
UHGV-0109531_33	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0109531_34	PHROG	phrog_544	major head protein	head and packaging
UHGV-0109531_34	UniRef90	UniRef90_A0A395X7A1	S-l_SbsC_C domain-containing protein	NA
UHGV-0109531_34	eggNOG-mapper	476272.RUMHYD_01776	NA	NA
UHGV-0109531_34	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0109531_35	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0109531_35	eggNOG-mapper	1235790.C805_00076	NA	NA
UHGV-0109531_36	PHROG	phrog_3366	NA	unknown function
UHGV-0109531_36	eggNOG-mapper	1235790.C805_00078	NA	NA
UHGV-0109531_36	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0109531_37	Structural annotation	PF12691	NA	NA
UHGV-0109531_38	PHROG	phrog_3099	NA	unknown function
UHGV-0109531_38	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0109531_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0109531_39	UniRef90	UniRef90_A0A412KF72	RNA polymerase subunit sigma	NA
UHGV-0109531_39	Structural annotation	PF10666	NA	NA
UHGV-0109531_40	PHROG	phrog_706	NA	unknown function
UHGV-0109531_40	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0109531_40	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0109531_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0109531_40	Structural annotation	PF06854	NA	NA
UHGV-0109531_41	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0109531_41	eggNOG-mapper	1280689.AUJC01000003_gene976	phage tail tape measure protein	NA
UHGV-0109531_41	COG	COG5283	Phage-related tail protein	NA
UHGV-0109531_42	PHROG	phrog_1194	NA	unknown function
UHGV-0109531_42	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-0109531_42	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0109531_43	PHROG	phrog_13879	NA	unknown function
UHGV-0109531_43	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-0109531_43	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0109531_45	PHROG	phrog_18725	NA	unknown function
UHGV-0109531_45	eggNOG-mapper	1226322.HMPREF1545_00062	NA	NA
UHGV-0109531_48	PHROG	phrog_4105	NA	unknown function
UHGV-0109531_48	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0109531_49	PHROG	phrog_1129	holin	lysis
UHGV-0109531_49	UniRef90	UniRef90_A0A412KF76	Holin	NA
UHGV-0109531_49	eggNOG-mapper	1256908.HMPREF0373_00463	Phage holin family Hol44, in holin superfamily V	NA
UHGV-0109531_49	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0109531_49	Structural annotation	PF06946	NA	NA
UHGV-0109531_50	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0109531_50	PHROG	phrog_435	endolysin	lysis
UHGV-0109531_50	UniRef90	UniRef90_A0A1Q6KI91	SPOR domain-containing protein	NA
UHGV-0109531_50	eggNOG-mapper	33035.JPJF01000090_gene96	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	NA
UHGV-0109531_50	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0109531_50	Pfam	PF05036	SPOR domain	SPOR
UHGV-0109531_50	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0109531_50	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0109531_51	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0109531_51	PHROG	phrog_95	integrase	integration and excision
UHGV-0109531_51	UniRef90	UniRef90_A0A1Q6KI87	Resolvase/invertase-type recombinase catalytic domain-containing protein	NA
UHGV-0109531_51	eggNOG-mapper	180332.JTGN01000010_gene4488	Resolvase, N terminal domain	NA
UHGV-0109531_51	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0109531_51	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0109531_51	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0109531_51	Structural annotation	PF00239, PF13408, PF14235, NF041201, COG1961, COG1579	NA	NA
UHGV-0109531_52	PHROG	phrog_8545	superinfection exclusion Sie-like	moron, auxiliary metabolic gene and host takeover
UHGV-0109531_52	UniRef90	UniRef90_A0A0V8QJ55	zinc_ribbon_2 domain-containing protein	NA
UHGV-0109531_52	eggNOG-mapper	1304866.K413DRAFT_0836	tRNA_anti-like	NA
UHGV-0109531_52	Pfam	PF12869	tRNA_anti-like	tRNA_anti-like
UHGV-0109531_52	Structural annotation	PF12869, PF10571, MF_01959, TIGR03943, COG5235	NA	NA
UHGV-0109531_54	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0109531_54	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109531_54	UniRef90	UniRef90_A0A3R5Z350	XRE family transcriptional regulator	NA
UHGV-0109531_54	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-0109531_54	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0109531_54	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109531_54	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109531_54	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0109531_57	eggNOG-mapper	1235802.C823_04724	NA	NA
UHGV-0109531_58	Structural annotation	PF11127	NA	NA
UHGV-0109531_60	Structural annotation	PF15513, NF007469	NA	NA
UHGV-0109531_62	PHROG	phrog_14970	NA	unknown function
UHGV-0109531_62	eggNOG-mapper	1235798.C817_00385	double-strand break repair protein	NA
UHGV-0109531_62	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0109531_62	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0109531_62	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0109531_63	PHROG	phrog_398	NA	unknown function
UHGV-0109531_63	UniRef90	UniRef90_A0A4P8IGL9	NA	NA
UHGV-0109531_63	eggNOG-mapper	33035.JPJF01000122_gene2462	Putative HNHc nuclease	NA
UHGV-0109531_63	Pfam	PF16784	Putative HNHc nuclease	HNHc_6
UHGV-0109531_63	Structural annotation	PF16784	NA	NA
UHGV-0109531_65	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0109531_65	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0109531_65	UniRef90	UniRef90_A0A412FH46	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0109531_65	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0109531_65	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0109531_65	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0109531_65	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0109531_66	PHROG	phrog_186	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0109531_66	UniRef90	UniRef90_UPI0009E28958	DnaD domain protein	NA
UHGV-0109531_66	eggNOG-mapper	1071400.LBUCD034_0926	DnaD domain protein	NA
UHGV-0109531_66	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0109531_66	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0109531_67	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0109531_67	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0109531_67	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0109531_67	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0109531_67	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0109531_67	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0109531_67	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0109531_70	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-0109531_71	PHROG	phrog_8684	NA	unknown function
UHGV-0109531_71	UniRef90	UniRef90_A0A6L6XDP0	YopX domain-containing protein	NA
UHGV-0109531_71	eggNOG-mapper	1121097.JCM15093_2710	YopX protein	NA
UHGV-0109531_71	Pfam	PF09643	YopX protein	YopX
UHGV-0109531_71	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0109531_71	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0109531_72	UniRef90	UniRef90_R7BIL7	Putative DNA topoisomerase I	NA
UHGV-0109531_72	eggNOG-mapper	744980.TRICHSKD4_3375	NA	NA
UHGV-0109531_74	PHROG	phrog_874	NA	unknown function
UHGV-0109531_74	UniRef90	UniRef90_UPI0018F57B3A	ASCH domain-containing protein	NA
UHGV-0109531_74	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0109531_74	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA