UHGV-0109537

Genome information

Genome length 36,089 bps

CDS count 52

Completeness 95.54% (high-quality)

geNomad score 0.9774

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109537
vOTU ID	vOTU-062739
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_240028
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	95.54% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9774
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	37.8
Jumbo phage	No

Genome content
Genome length	36,089 bps
GC content	44.52%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	52
CDS density	91.45%
Average CDS length	638.31 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109537_1	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0109537_1	PHROG	phrog_3088	amidase	lysis
UHGV-0109537_1	UniRef90	UniRef90_A0A416ZS17	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0109537_1	eggNOG-mapper	478749.BRYFOR_07564	n-acetylmuramoyl-l-alanine amidase	NA
UHGV-0109537_1	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0109537_1	COG	COG3087	Cell division protein FtsN	NA
UHGV-0109537_1	Structural annotation	PF01510, PF18342, MF_04111, NF008758, COG5632	NA	NA
UHGV-0109537_2	PHROG	phrog_199	holin	lysis
UHGV-0109537_2	UniRef90	UniRef90_A0A416ZS05	Holin	NA
UHGV-0109537_2	eggNOG-mapper	411460.RUMTOR_02100	NA	NA
UHGV-0109537_2	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0109537_2	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0109537_2	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0109537_4	PHROG	phrog_585	NA	unknown function
UHGV-0109537_4	UniRef90	UniRef90_A0A416ZS00	NA	NA
UHGV-0109537_4	eggNOG-mapper	871963.Desdi_0124	NA	NA
UHGV-0109537_4	Pfam	PF10711	NA	DUF2513
UHGV-0109537_4	Structural annotation	PF10711, TIGR03433, COG3355	NA	NA
UHGV-0109537_7	UniRef90	UniRef90_UPI0013141798	ribbon-helix-helix protein, CopG family	NA
UHGV-0109537_7	Pfam	PF01402	Ribbon-helix-helix protein, copG family	RHH_1
UHGV-0109537_7	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0109537_11	PHROG	phrog_28673	tail protein	tail
UHGV-0109537_11	eggNOG-mapper	1540090.A0A0A0RS40_9CAUD	NA	NA
UHGV-0109537_11	Structural annotation	PF10651, PF14606	NA	NA
UHGV-0109537_12	PHROG	phrog_19695	NA	unknown function
UHGV-0109537_12	eggNOG-mapper	411462.DORLON_00772	NA	NA
UHGV-0109537_12	Structural annotation	PF19714	NA	NA
UHGV-0109537_13	PHROG	phrog_24267	NA	unknown function
UHGV-0109537_13	UniRef90	UniRef90_R5HGH3	Phage minor structural protein	NA
UHGV-0109537_13	eggNOG-mapper	526218.Sterm_2930	NA	NA
UHGV-0109537_14	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0109537_14	PHROG	phrog_14030	NA	unknown function
UHGV-0109537_14	UniRef90	UniRef90_UPI0013140944	phage tail tip lysozyme	NA
UHGV-0109537_14	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0109537_14	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0109537_14	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0109537_14	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0109537_14	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0109537_15	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0109537_15	UniRef90	UniRef90_A0A373N0D4	Prophage_tail domain-containing protein	NA
UHGV-0109537_15	eggNOG-mapper	33035.JPJF01000023_gene3230	Phage minor structural protein	NA
UHGV-0109537_15	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0109537_15	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0109537_15	COG	COG4926	Phage-related protein	NA
UHGV-0109537_15	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0109537_16	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0109537_16	UniRef90	UniRef90_A0A844KEE5	Phage tail protein	NA
UHGV-0109537_16	eggNOG-mapper	1232452.BAIB02000007_gene1615	phage tail	NA
UHGV-0109537_16	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0109537_16	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0109537_16	COG	COG4722	Phage-related protein YomH	NA
UHGV-0109537_16	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0109537_17	KOfam	K11499	CENPF; centromere protein F	NA
UHGV-0109537_17	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0109537_17	UniRef90	UniRef90_A0A373N0I0	Phage tail tape measure protein	NA
UHGV-0109537_17	eggNOG-mapper	742740.HMPREF9474_01203	Phage tail tape measure protein, TP901 family	NA
UHGV-0109537_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0109537_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0109537_17	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0109537_19	PHROG	phrog_88	major tail protein	tail
UHGV-0109537_19	UniRef90	UniRef90_A0A416ZS16	Phage tail protein	NA
UHGV-0109537_19	eggNOG-mapper	1201292.DR75_1633	NA	NA
UHGV-0109537_19	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0109537_19	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0109537_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0109537_20	UniRef90	UniRef90_D4M595	Phage protein, HK97 gp10 family	NA
UHGV-0109537_20	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0109537_20	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0109537_21	PHROG	phrog_78	tail terminator	connector
UHGV-0109537_21	Structural annotation	PF05657	NA	NA
UHGV-0109537_22	UniRef90	UniRef90_UPI00189B1559	phage head closure protein	NA
UHGV-0109537_22	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0109537_22	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0109537_23	PHROG	phrog_749	NA	unknown function
UHGV-0109537_24	PHROG	phrog_10	major head protein	head and packaging
UHGV-0109537_24	UniRef90	UniRef90_A0A373N0L7	Phage major capsid protein	NA
UHGV-0109537_24	eggNOG-mapper	1232452.BAIB02000007_gene1625	Phage capsid family	NA
UHGV-0109537_24	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0109537_24	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0109537_24	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0109537_24	Structural annotation	PF05065, TIGR01554, COG4653	NA	NA
UHGV-0109537_25	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0109537_25	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0109537_25	UniRef90	UniRef90_A0A416ZS51	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0109537_25	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0109537_25	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0109537_25	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0109537_25	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0109537_26	PHROG	phrog_12	portal protein	head and packaging
UHGV-0109537_26	UniRef90	UniRef90_A0A416ZRW1	Phage portal protein	NA
UHGV-0109537_26	eggNOG-mapper	1232452.BAIB02000007_gene1627	Phage portal protein, HK97 family	NA
UHGV-0109537_26	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0109537_26	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0109537_26	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0109537_27	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0109537_27	UniRef90	UniRef90_A0A373MZZ0	Terminase large subunit	NA
UHGV-0109537_27	eggNOG-mapper	1232452.BAIB02000007_gene1629	Phage terminase-like protein large subunit	NA
UHGV-0109537_27	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0109537_27	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0109537_27	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0109537_27	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0109537_28	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0109537_28	UniRef90	UniRef90_A0A371IJQ7	RNA polymerase subunit sigma-70	NA
UHGV-0109537_28	eggNOG-mapper	349161.Dred_2608	NA	NA
UHGV-0109537_28	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0109537_28	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0109537_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0109537_29	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109537_29	UniRef90	UniRef90_A0A373N028	HNH endonuclease	NA
UHGV-0109537_29	eggNOG-mapper	1232452.BAIB02000007_gene1631	HNH nucleases	NA
UHGV-0109537_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0109537_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0109537_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0109537_30	UniRef90	UniRef90_A0A373MZQ3	NA	NA
UHGV-0109537_30	eggNOG-mapper	658655.HMPREF0988_02569	sigma factor activity	NA
UHGV-0109537_30	Pfam	PF07374	NA	DUF1492
UHGV-0109537_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0109537_30	Structural annotation	PF07374, MF_00674, NF007227, COG1342	NA	NA
UHGV-0109537_33	PHROG	phrog_16351	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0109537_33	UniRef90	UniRef90_A0A894KBW2	LexA_DNA_bind domain-containing protein	NA
UHGV-0109537_33	eggNOG-mapper	658655.HMPREF0988_00866	NA	NA
UHGV-0109537_34	PHROG	phrog_98	NA	unknown function
UHGV-0109537_34	UniRef90	UniRef90_A0A3G8F867	YopX domain-containing protein	NA
UHGV-0109537_34	eggNOG-mapper	565653.EGBG_00901	YopX protein	NA
UHGV-0109537_34	Pfam	PF09643	YopX protein	YopX
UHGV-0109537_34	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0109537_36	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0109537_36	Structural annotation	PF02796, NF040595	NA	NA
UHGV-0109537_38	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0109537_38	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0109537_38	UniRef90	UniRef90_A0A373N003	Single-stranded DNA-binding protein	NA
UHGV-0109537_38	eggNOG-mapper	1256908.HMPREF0373_03133	Single-stranded DNA-binding protein	NA
UHGV-0109537_38	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0109537_38	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0109537_38	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0109537_38	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0109537_38	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0109537_39	UniRef90	UniRef90_A0A373N0F2	Winged helix-turn-helix transcriptional regulator	NA
UHGV-0109537_39	Pfam	PF13412	Winged helix-turn-helix DNA-binding	HTH_24
UHGV-0109537_39	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0109537_39	Structural annotation	PF01726, MF_00732, NF041852, COG0640	NA	NA
UHGV-0109537_40	PHROG	phrog_15077	NA	unknown function
UHGV-0109537_40	UniRef90	UniRef90_A5ZPN2	NA	NA
UHGV-0109537_40	eggNOG-mapper	97139.C824_05986	NA	NA
UHGV-0109537_40	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0109537_41	PHROG	phrog_8470	NA	unknown function
UHGV-0109537_41	UniRef90	UniRef90_UPI001D086F83	PcfJ domain-containing protein	NA
UHGV-0109537_41	eggNOG-mapper	1235792.C808_03081	PcfJ-like protein	NA
UHGV-0109537_41	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0109537_41	Structural annotation	PF14284	NA	NA
UHGV-0109537_42	eggNOG-mapper	1235792.C808_00065	NA	NA
UHGV-0109537_43	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0109537_43	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0109537_43	UniRef90	UniRef90_A0A373MZB7	RNase H type-1 domain-containing protein	NA
UHGV-0109537_43	eggNOG-mapper	1268635.Loa_01114	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0109537_43	Pfam	PF00075	RNase H	RNase_H
UHGV-0109537_43	COG	COG0328	Ribonuclease HI	NA
UHGV-0109537_43	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0109537_44	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0109537_44	eggNOG-mapper	1280698.AUJS01000007_gene1013	NA	NA
UHGV-0109537_44	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0109537_47	PHROG	phrog_36464	NA	unknown function
UHGV-0109537_47	eggNOG-mapper	1235798.C817_05488	NA	NA
UHGV-0109537_49	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0109537_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109537_49	UniRef90	UniRef90_A0A416ZRZ3	XRE family transcriptional regulator	NA
UHGV-0109537_49	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0109537_49	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0109537_49	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109537_49	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0109537_51	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0109537_51	PHROG	phrog_38135	NA	unknown function
UHGV-0109537_51	UniRef90	UniRef90_A0A416ZS49	NA	NA
UHGV-0109537_51	eggNOG-mapper	1280686.AUKE01000005_gene2337	NA	NA
UHGV-0109537_51	Pfam	PF14020	NA	DUF4236
UHGV-0109537_51	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0109537_51	Structural annotation	PF14020	NA	NA
UHGV-0109537_52	KOfam	K14059	int; integrase	NA
UHGV-0109537_52	PHROG	phrog_1	integrase	integration and excision
UHGV-0109537_52	UniRef90	UniRef90_A0A373N009	Site-specific integrase	NA
UHGV-0109537_52	eggNOG-mapper	33035.JPJF01000071_gene4457	Phage integrase family	NA
UHGV-0109537_52	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0109537_52	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0109537_52	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA