UHGV-0109613

Genome information

Genome length 55,300 bps

CDS count 95

Completeness 100.00% (complete)

geNomad score 0.9819

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109613
vOTU ID	vOTU-045613
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_252910
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9819
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.8
Jumbo phage	No

Genome content
Genome length	55,300 bps
GC content	40.34%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	95
CDS density	87.85%
Average CDS length	514.64 bps
tRNA count	4
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109613_1	UniRef90	UniRef90_A0A1V5X6U7	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0109613_1	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0109613_1	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0109613_2	UniRef90	UniRef90_A0A6H1WYD4	DNA-binding protein	NA
UHGV-0109613_2	eggNOG-mapper	1511.CLOST_0069	NA	NA
UHGV-0109613_2	Structural annotation	PF07878, NF041793, COG4877	NA	NA
UHGV-0109613_3	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109613_3	UniRef90	UniRef90_A0A3Q9RLP4	Deoxyuridine 5'-triphosphate nucleotidohydrolase family protein	NA
UHGV-0109613_3	eggNOG-mapper	1129192.A0A0E3D9L6_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0109613_4	UniRef90	UniRef90_R6C0B6	Phage capsid scaffolding protein	NA
UHGV-0109613_5	PHROG	phrog_909	major head protein	head and packaging
UHGV-0109613_5	eggNOG-mapper	1232453.BAIF02000058_gene1627	NA	NA
UHGV-0109613_6	PHROG	phrog_29	major head protein	head and packaging
UHGV-0109613_6	UniRef90	UniRef90_UPI001BB87CDE	Major capsid protein	NA
UHGV-0109613_6	eggNOG-mapper	1298920.KI911353_gene2660	Phage major capsid protein E	NA
UHGV-0109613_6	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0109613_6	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0109613_7	Structural annotation	PF21169	NA	NA
UHGV-0109613_8	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0109613_9	PHROG	phrog_4105	NA	unknown function
UHGV-0109613_9	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0109613_10	PHROG	phrog_443	holin	lysis
UHGV-0109613_10	UniRef90	UniRef90_UPI000BA3B743	holin	NA
UHGV-0109613_10	eggNOG-mapper	411490.ANACAC_00704	Putative lactococcus lactis phage r1t holin	NA
UHGV-0109613_10	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0109613_10	Structural annotation	PF16945	NA	NA
UHGV-0109613_11	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0109613_12	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0109613_12	AcrCatalog	cluster_24841	NA	NA
UHGV-0109613_13	Structural annotation	PF05657	NA	NA
UHGV-0109613_14	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0109613_14	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0109613_17	PHROG	phrog_14030	NA	unknown function
UHGV-0109613_17	UniRef90	UniRef90_A0A3R6ARM6	Peptidoglycan-binding protein	NA
UHGV-0109613_17	eggNOG-mapper	1235793.C809_02691	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-0109613_17	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0109613_18	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0109613_18	UniRef90	UniRef90_A0A173UHS1	Phage-related protein	NA
UHGV-0109613_18	eggNOG-mapper	1211844.CBLM010000016_gene1482	tape measure	NA
UHGV-0109613_18	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0109613_18	Structural annotation	PF20155, MF_04138	NA	NA
UHGV-0109613_19	UniRef90	UniRef90_A0A173UG14	BIG2 domain-containing protein	NA
UHGV-0109613_19	eggNOG-mapper	1410624.JNKK01000088_gene2110	Bacterial Ig-like domain (group 2)	NA
UHGV-0109613_19	Structural annotation	PF02368, PF07233, NF038353, NF005261	NA	NA
UHGV-0109613_20	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0109613_20	UniRef90	UniRef90_UPI0009D7969F	transporter	NA
UHGV-0109613_20	eggNOG-mapper	1443125.Z962_p0009	BRO family, N-terminal domain	NA
UHGV-0109613_20	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0109613_20	COG	COG3617	Prophage antirepressor	NA
UHGV-0109613_20	Structural annotation	PF02498, COG3617	NA	NA
UHGV-0109613_21	PHROG	phrog_1194	NA	unknown function
UHGV-0109613_21	Pfam	PF20458	NA	DUF6711
UHGV-0109613_21	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0109613_22	PHROG	phrog_18190	NA	unknown function
UHGV-0109613_22	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0109613_22	eggNOG-mapper	397290.C810_05239	NA	NA
UHGV-0109613_22	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0109613_22	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0109613_23	PHROG	phrog_17196	kinase	other
UHGV-0109613_23	eggNOG-mapper	483218.BACPEC_01141	NA	NA
UHGV-0109613_23	Structural annotation	PF19537, PF13619, COG3536	NA	NA
UHGV-0109613_25	Pfam	PF09458	H-type lectin domain	H_lectin
UHGV-0109613_26	eggNOG-mapper	610130.Closa_0760	NA	NA
UHGV-0109613_27	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-0109613_27	Structural annotation	NF040910	NA	NA
UHGV-0109613_28	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0109613_28	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109613_28	UniRef90	UniRef90_A0A1Q6LL24	HTH cro/C1-type domain-containing protein	NA
UHGV-0109613_28	eggNOG-mapper	642492.Clole_0718	DNA-binding helix-turn-helix protein	NA
UHGV-0109613_28	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0109613_28	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109613_28	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109613_28	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0109613_30	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0109613_30	UniRef90	UniRef90_UPI001D00AF42	ORF6N domain-containing protein	NA
UHGV-0109613_30	eggNOG-mapper	926561.KB900622_gene670	ORF6N domain	NA
UHGV-0109613_30	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0109613_30	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0109613_30	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0109613_35	PHROG	phrog_26861	NA	unknown function
UHGV-0109613_35	UniRef90	UniRef90_A0A173RCS5	Single-stranded DNA-binding protein	NA
UHGV-0109613_35	eggNOG-mapper	483218.BACPEC_01931	Single-strand binding protein family	NA
UHGV-0109613_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0109613_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0109613_35	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0109613_36	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-0109613_36	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109613_36	UniRef90	UniRef90_A0A413Z5U6	AAA_23 domain-containing protein	NA
UHGV-0109613_36	eggNOG-mapper	1232453.BAIF02000057_gene1134	nuclear chromosome segregation	NA
UHGV-0109613_36	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0109613_36	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-0109613_37	eggNOG-mapper	1449126.JQKL01000024_gene2354	NA	NA
UHGV-0109613_40	eggNOG-mapper	1232453.BAIF02000057_gene1135	NA	NA
UHGV-0109613_42	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0109613_42	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0109613_42	UniRef90	UniRef90_A0A317UEK3	Recombinase RecT	NA
UHGV-0109613_42	eggNOG-mapper	1298920.KI911353_gene2727	RecT family	NA
UHGV-0109613_42	Pfam	PF03837	RecT family	RecT
UHGV-0109613_42	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-0109613_42	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0109613_42	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0109613_43	PHROG	phrog_25456	NA	unknown function
UHGV-0109613_44	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-0109613_44	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-0109613_44	UniRef90	UniRef90_A0A173REW9	Beta-lactamase superfamily domain	NA
UHGV-0109613_44	eggNOG-mapper	1144313.PMI10_00501	Metallo-beta-lactamase superfamily	NA
UHGV-0109613_44	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-0109613_44	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-0109613_44	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-0109613_47	PHROG	phrog_3377	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109613_47	UniRef90	UniRef90_A0A7U3T981	Helix-turn-helix DNA binding domain protein	NA
UHGV-0109613_47	eggNOG-mapper	1460635.JCM19038_3433	NA	NA
UHGV-0109613_48	PHROG	phrog_19106	NA	unknown function
UHGV-0109613_48	UniRef90	UniRef90_A0A412EKN4	GIY-YIG nuclease family protein	NA
UHGV-0109613_48	eggNOG-mapper	658655.HMPREF0988_00875	NA	NA
UHGV-0109613_48	Structural annotation	TIGR01453	NA	NA
UHGV-0109613_49	PHROG	phrog_11769	NA	unknown function
UHGV-0109613_49	UniRef90	UniRef90_A0A173RDT0	Phage replisome organizer, putative, N-terminal region	NA
UHGV-0109613_49	eggNOG-mapper	536232.CLM_1634	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0109613_49	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0109613_49	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0109613_49	Structural annotation	PF09681, TIGR01714, COG3388	NA	NA
UHGV-0109613_50	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0109613_50	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0109613_50	UniRef90	UniRef90_A0A173RD23	DNA helicase	NA
UHGV-0109613_50	eggNOG-mapper	1298920.KI911353_gene2061	Participates in initiation and elongation during chromosome replication	NA
UHGV-0109613_50	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0109613_50	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0109613_50	COG	COG0305	Replicative DNA helicase	NA
UHGV-0109613_50	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0109613_54	PHROG	phrog_22292	NA	unknown function
UHGV-0109613_55	eggNOG-mapper	483218.BACPEC_01162	sequence-specific DNA binding	NA
UHGV-0109613_55	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109613_56	PHROG	phrog_8684	NA	unknown function
UHGV-0109613_56	UniRef90	UniRef90_A0A1Q6ETU5	YopX domain-containing protein	NA
UHGV-0109613_56	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0109613_56	Pfam	PF09643	YopX protein	YopX
UHGV-0109613_56	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0109613_57	eggNOG-mapper	397290.C810_01514	NA	NA
UHGV-0109613_58	PHROG	phrog_20593	NA	unknown function
UHGV-0109613_60	PHROG	phrog_874	NA	unknown function
UHGV-0109613_60	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0109613_60	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0109613_60	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0109613_61	Structural annotation	PF11184	NA	NA
UHGV-0109613_66	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0109613_66	eggNOG-mapper	658655.HMPREF0988_00884	NA	NA
UHGV-0109613_66	AcrCatalog	cluster_47493	NA	NA
UHGV-0109613_66	Structural annotation	PF00145, MF_00341, COG0270	NA	NA
UHGV-0109613_67	UniRef90	UniRef90_A0A173RE24	Bacterial regulatory proteins, luxR family	NA
UHGV-0109613_67	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0109613_67	Structural annotation	PF00196, MF_00245, NF001067, COG2771	NA	NA
UHGV-0109613_68	KOfam	K14059	int; integrase	NA
UHGV-0109613_68	PHROG	phrog_1	integrase	integration and excision
UHGV-0109613_68	UniRef90	UniRef90_A0A173REA3	Site-specific tyrosine recombinase XerD	NA
UHGV-0109613_68	eggNOG-mapper	397291.C804_00897	Phage integrase family	NA
UHGV-0109613_68	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0109613_68	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0109613_68	Structural annotation	PF00589, PF02920, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0109613_70	eggNOG-mapper	658655.HMPREF0988_00919	NA	NA
UHGV-0109613_71	eggNOG-mapper	658655.HMPREF0988_00918	NA	NA
UHGV-0109613_72	PHROG	phrog_16490	NA	unknown function
UHGV-0109613_72	eggNOG-mapper	397290.C810_01328	NA	NA
UHGV-0109613_73	PHROG	phrog_20016	NA	unknown function
UHGV-0109613_73	UniRef90	UniRef90_A0A285PT46	Tumour necrosis factor-like domain	NA
UHGV-0109613_73	eggNOG-mapper	397290.C810_05214	NA	NA
UHGV-0109613_73	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0109613_74	eggNOG-mapper	658655.HMPREF0988_00915	NA	NA
UHGV-0109613_75	PHROG	phrog_1233	NA	unknown function
UHGV-0109613_75	eggNOG-mapper	658655.HMPREF0988_00914	NA	NA
UHGV-0109613_75	Structural annotation	PF13058	NA	NA
UHGV-0109613_81	PHROG	phrog_11100	NA	unknown function
UHGV-0109613_81	eggNOG-mapper	1283077.M1ICI7_9CAUD	NA	NA
UHGV-0109613_82	PHROG	phrog_31631	NA	unknown function
UHGV-0109613_84	eggNOG-mapper	658655.HMPREF0988_00895	NA	NA
UHGV-0109613_85	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0109613_85	UniRef90	UniRef90_UPI001D02B1F9	nucleoside triphosphate pyrophosphohydrolase family protein	NA
UHGV-0109613_85	eggNOG-mapper	428125.CLOLEP_01391	MazG nucleotide pyrophosphohydrolase domain	NA
UHGV-0109613_85	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0109613_85	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0109613_85	Structural annotation	PF03819, MF_01020, TIGR03188, COG1694	NA	NA
UHGV-0109613_86	eggNOG-mapper	411473.RUMCAL_02525	NA	NA
UHGV-0109613_88	UniRef90	UniRef90_UPI001D011ACB	zinc ribbon domain-containing protein	NA
UHGV-0109613_89	Structural annotation	PF04466	NA	NA
UHGV-0109613_93	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0109613_93	UniRef90	UniRef90_A0A8D9PG33	Terminase	NA
UHGV-0109613_93	eggNOG-mapper	1232453.BAIF02000058_gene1623	TIGRFAM Phage	NA
UHGV-0109613_93	COG	COG5410	NA	NA
UHGV-0109613_93	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0109613_94	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0109613_94	UniRef90	UniRef90_A0A410QFZ6	NA	NA
UHGV-0109613_94	eggNOG-mapper	994573.T472_0211085	sigma factor activity	NA
UHGV-0109613_94	Pfam	PF07374	NA	DUF1492
UHGV-0109613_94	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0109613_94	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-0109613_95	PHROG	phrog_64	portal protein	head and packaging
UHGV-0109613_95	UniRef90	UniRef90_A0A173UGW9	Phage portal protein, SPP1 family	NA
UHGV-0109613_95	eggNOG-mapper	1298920.KI911353_gene2663	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0109613_95	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0109613_95	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA