UHGV-0109617

Genome information

Genome length 19,000 bps

CDS count 28

Completeness 59.13% (medium-quality)

geNomad score 0.9798

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109617
vOTU ID	vOTU-016145
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_252892
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	HMM-based
CheckV completeness	59.13% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	7
CheckV host markers	2
Recoded stop codon	No

Viral signal
geNomad score	0.9798
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	12.49
Jumbo phage	No

Genome content
Genome length	19,000 bps
GC content	37.93%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	28
CDS density	89.81%
Average CDS length	611.36 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109617_1	Structural annotation	PF17548	NA	NA
UHGV-0109617_10	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0109617_10	Structural annotation	PF03175, MF_04055, NF004417, COG0417	NA	NA
UHGV-0109617_12	KOfam	K06412	spoVG; stage V sporulation protein G	NA
UHGV-0109617_12	UniRef90	UniRef90_A0A2H0CCY5	Septation protein spoVG	NA
UHGV-0109617_12	eggNOG-mapper	1089553.Tph_c07250	Could be involved in septation	NA
UHGV-0109617_12	Pfam	PF04026	SpoVG	SpoVG
UHGV-0109617_12	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-0109617_12	Structural annotation	PF04026, MF_00819, NF009749, COG2088	NA	NA
UHGV-0109617_13	Structural annotation	PF12708, TIGR04247, COG3420	NA	NA
UHGV-0109617_16	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0109617_16	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-0109617_17	PHROG	phrog_2038	upper collar connector	connector
UHGV-0109617_17	eggNOG-mapper	338473.A6XAD7_9CAUD	Phage Connector (GP10)	NA
UHGV-0109617_17	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0109617_17	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0109617_18	PHROG	phrog_2248	tail protein	tail
UHGV-0109617_18	UniRef90	UniRef90_A0A843HU95	Caud_tail_N domain-containing protein	NA
UHGV-0109617_18	eggNOG-mapper	1309583.M4W9Q4_9CAUD	NA	NA
UHGV-0109617_18	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0109617_18	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0109617_18	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0109617_19	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0109617_19	PHROG	phrog_14988	peptidase	other
UHGV-0109617_19	UniRef90	UniRef90_A0A4Q0U6L7	Peptidase_M23 domain-containing protein (Fragment)	NA
UHGV-0109617_19	eggNOG-mapper	907931.AEIZ01000001_gene425	Peptidase family M23	NA
UHGV-0109617_19	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0109617_19	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0109617_19	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-0109617_20	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0109617_20	UniRef90	UniRef90_J9H241	Major head protein	NA
UHGV-0109617_20	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-0109617_20	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0109617_24	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0109617_24	PHROG	phrog_3578	metallo-endopeptidase	other
UHGV-0109617_24	UniRef90	UniRef90_A0A348SZW4	Peptidase_M23 domain-containing protein	NA
UHGV-0109617_24	eggNOG-mapper	293614.A1C_05580	COG0739 Membrane proteins related to metalloendopeptidases	NA
UHGV-0109617_24	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0109617_24	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0109617_24	Structural annotation	PF01551, NF040883	NA	NA
UHGV-0109617_25	PHROG	phrog_199	holin	lysis
UHGV-0109617_25	UniRef90	UniRef90_A0A843HL15	Phage holin family protein	NA
UHGV-0109617_25	eggNOG-mapper	877414.ATWA01000062_gene1614	Bacteriophage holin family	NA
UHGV-0109617_25	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0109617_25	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0109617_25	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0109617_26	PHROG	phrog_2150	terminase	head and packaging
UHGV-0109617_26	UniRef90	UniRef90_A0A355RJE0	DNA encapsidation protein	NA
UHGV-0109617_26	eggNOG-mapper	10753.B7SSN7_BPNF	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0109617_26	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0109617_26	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0109617_27	KOfam	K18904	nodT, ameC; outer membrane protein, multidrug efflux system	NA
UHGV-0109617_27	UniRef90	UniRef90_A0A7C5XTD9	TolC family protein	NA
UHGV-0109617_27	eggNOG-mapper	657309.BXY_04840	Efflux transporter, outer membrane factor lipoprotein, NodT family	NA
UHGV-0109617_27	Pfam	PF02321	Outer membrane efflux protein	OEP
UHGV-0109617_27	COG	COG1538	Outer membrane protein TolC	NA
UHGV-0109617_28	eggNOG-mapper	483215.BACFIN_06966	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family	NA
UHGV-0109617_28	COG	COG0845	Multidrug efflux pump subunit AcrA (membrane-fusion protein)	NA