UHGV-0109638

Genome information

Genome length 32,537 bps

CDS count 50

Completeness 99.05% (high-quality)

geNomad score 0.9768

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109638
vOTU ID	vOTU-068657
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_251470
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.05% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9768
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	48.62
Jumbo phage	No

Genome content
Genome length	32,537 bps
GC content	44.69%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	50
CDS density	92.31%
Average CDS length	603.24 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109638_2	KOfam	K00986	ltrA; RNA-directed DNA polymerase [EC:2.7.7.49]	NA
UHGV-0109638_2	PHROG	phrog_1423	Reverse transcriptase	DNA, RNA and nucleotide metabolism
UHGV-0109638_2	UniRef90	UniRef90_A0A1C5MA91	Retron-type reverse transcriptase	NA
UHGV-0109638_2	eggNOG-mapper	1160721.RBI_I01568	Reverse transcriptase (RNA-dependent DNA polymerase)	NA
UHGV-0109638_2	PADLOC	icity0040	RT (reverse transcriptase)	CRISPR-CAS
UHGV-0109638_2	Pfam	PF00078	Reverse transcriptase (RNA-dependent DNA polymerase)	RVT_1
UHGV-0109638_2	COG	COG3344	Retron-type reverse transcriptase	NA
UHGV-0109638_2	Structural annotation	PF00078, MF_01390, TIGR04416, COG3344	NA	NA
UHGV-0109638_3	UniRef90	UniRef90_UPI00189E384C	four helix bundle protein	NA
UHGV-0109638_3	eggNOG-mapper	525254.HMPREF0072_1280	NA	NA
UHGV-0109638_3	Structural annotation	PF05635, NF008911	NA	NA
UHGV-0109638_4	PHROG	phrog_24060	NA	unknown function
UHGV-0109638_4	UniRef90	UniRef90_A0A7C9H8W0	NA	NA
UHGV-0109638_4	eggNOG-mapper	1235797.C816_02837	NA	NA
UHGV-0109638_4	Pfam	PF19789	NA	DUF6273
UHGV-0109638_4	Structural annotation	PF19789	NA	NA
UHGV-0109638_5	PHROG	phrog_19280	NA	unknown function
UHGV-0109638_5	UniRef90	UniRef90_A0A7C9H3D3	BppU_N domain-containing protein	NA
UHGV-0109638_5	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0109638_8	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0109638_8	UniRef90	UniRef90_A0A7C9HAK5	Prophage_tail domain-containing protein	NA
UHGV-0109638_8	eggNOG-mapper	1160721.RBI_I01574	Prophage endopeptidase tail	NA
UHGV-0109638_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0109638_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0109638_8	COG	COG4926	Phage-related protein	NA
UHGV-0109638_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0109638_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0109638_9	UniRef90	UniRef90_UPI00164BA811	phage tail family protein	NA
UHGV-0109638_9	eggNOG-mapper	1444306.JFZC01000034_gene2623	tail component	NA
UHGV-0109638_9	COG	COG4722	Phage-related protein YomH	NA
UHGV-0109638_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0109638_10	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0109638_10	UniRef90	UniRef90_A0A0M6WZJ0	PhageMin_Tail domain-containing protein	NA
UHGV-0109638_10	eggNOG-mapper	946235.CAER01000065_gene2435	Phage tail tape measure protein	NA
UHGV-0109638_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0109638_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0109638_10	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0109638_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0109638_11	eggNOG-mapper	411902.CLOBOL_03872	NA	NA
UHGV-0109638_12	eggNOG-mapper	411468.CLOSCI_00542	NA	NA
UHGV-0109638_12	Structural annotation	PF17388	NA	NA
UHGV-0109638_13	PHROG	phrog_2175	protein with Ig domain	other
UHGV-0109638_13	eggNOG-mapper	457421.CBFG_03714	NA	NA
UHGV-0109638_13	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0109638_14	eggNOG-mapper	411468.CLOSCI_00544	NA	NA
UHGV-0109638_14	Structural annotation	PF20765	NA	NA
UHGV-0109638_15	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0109638_15	UniRef90	UniRef90_A0A7C9LD40	HK97 gp10 family phage protein	NA
UHGV-0109638_15	eggNOG-mapper	411468.CLOSCI_00545	COG NOG18351 non supervised orthologous group	NA
UHGV-0109638_15	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0109638_15	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0109638_16	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0109638_16	UniRef90	UniRef90_UPI00189EBA11	phage head closure protein	NA
UHGV-0109638_16	eggNOG-mapper	491915.Aflv_0668	head-tail adaptor	NA
UHGV-0109638_16	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0109638_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0109638_17	PHROG	phrog_5223	neck protein	connector
UHGV-0109638_17	UniRef90	UniRef90_A0A7C9LAV1	DNA-packaging protein	NA
UHGV-0109638_17	eggNOG-mapper	397290.C810_00423	NA	NA
UHGV-0109638_18	UniRef90	UniRef90_A0A7C9LC86	SAP domain-containing protein	NA
UHGV-0109638_18	Pfam	PF02037	SAP domain	SAP
UHGV-0109638_18	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0109638_18	Structural annotation	PF14000	NA	NA
UHGV-0109638_19	PHROG	phrog_10	major head protein	head and packaging
UHGV-0109638_19	UniRef90	UniRef90_A0A7C9L2Y0	Phage major capsid protein	NA
UHGV-0109638_19	eggNOG-mapper	397290.C810_00421	phage major capsid protein, HK97 family	NA
UHGV-0109638_19	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0109638_19	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0109638_19	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0109638_19	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0109638_20	KOfam	K06904	NA	NA
UHGV-0109638_20	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0109638_20	UniRef90	UniRef90_A0A7C9L2H1	HK97 family phage prohead protease	NA
UHGV-0109638_20	eggNOG-mapper	397290.C810_00420	Phage prohead protease, HK97 family	NA
UHGV-0109638_20	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0109638_20	COG	COG3740	Phage head maturation protease	NA
UHGV-0109638_20	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0109638_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0109638_21	UniRef90	UniRef90_A0A7C9LEF5	Phage portal protein	NA
UHGV-0109638_21	eggNOG-mapper	411470.RUMGNA_02063	Phage portal protein	NA
UHGV-0109638_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0109638_21	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0109638_21	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0109638_22	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0109638_22	UniRef90	UniRef90_A0A7C9KZF1	Terminase large subunit	NA
UHGV-0109638_22	eggNOG-mapper	397290.C810_00418	Phage Terminase	NA
UHGV-0109638_22	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0109638_22	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0109638_22	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0109638_22	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0109638_23	PHROG	phrog_1066	NA	unknown function
UHGV-0109638_23	eggNOG-mapper	411470.RUMGNA_02061	NA	NA
UHGV-0109638_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0109638_24	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0109638_24	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109638_24	UniRef90	UniRef90_A0A7C9KZ74	HNH endonuclease	NA
UHGV-0109638_24	eggNOG-mapper	397290.C810_00416	HNH endonuclease	NA
UHGV-0109638_24	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0109638_24	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0109638_25	PHROG	phrog_1558	NA	unknown function
UHGV-0109638_25	UniRef90	UniRef90_UPI001EE9266C	sigma-70 region 4 domain-containing protein	NA
UHGV-0109638_25	eggNOG-mapper	411470.RUMGNA_02058	NA	NA
UHGV-0109638_25	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0109638_26	PHROG	phrog_8684	NA	unknown function
UHGV-0109638_26	UniRef90	UniRef90_A0A6L5YH53	YopX domain-containing protein	NA
UHGV-0109638_26	eggNOG-mapper	742740.HMPREF9474_03496	YopX protein	NA
UHGV-0109638_26	Pfam	PF09643	YopX protein	YopX
UHGV-0109638_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0109638_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0109638_27	eggNOG-mapper	397290.C810_01505	NA	NA
UHGV-0109638_29	eggNOG-mapper	411470.RUMGNA_02055	NA	NA
UHGV-0109638_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0109638_30	PHROG	phrog_15982	NA	unknown function
UHGV-0109638_30	UniRef90	UniRef90_A0A7C9HAH3	NA	NA
UHGV-0109638_30	eggNOG-mapper	411470.RUMGNA_02052	NA	NA
UHGV-0109638_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0109638_30	Pfam	PF12961	NA	DUF3850
UHGV-0109638_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0109638_30	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0109638_31	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0109638_31	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0109638_31	UniRef90	UniRef90_A0A7C9H418	AAA family ATPase	NA
UHGV-0109638_31	eggNOG-mapper	397288.C806_00082	AAA domain	NA
UHGV-0109638_31	Pfam	PF13614	AAA domain	AAA_31
UHGV-0109638_31	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0109638_31	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0109638_33	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0109638_33	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109638_33	UniRef90	UniRef90_A0A351Y966	XRE family transcriptional regulator	NA
UHGV-0109638_33	eggNOG-mapper	1304880.JAGB01000002_gene2045	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0109638_33	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109638_33	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0109638_33	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0109638_34	PHROG	phrog_824	NA	unknown function
UHGV-0109638_34	UniRef90	UniRef90_A0A7C9H491	VRR-NUC domain-containing protein	NA
UHGV-0109638_34	eggNOG-mapper	411470.RUMGNA_02049	VRR-NUC domain	NA
UHGV-0109638_34	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0109638_34	Structural annotation	PF08774	NA	NA
UHGV-0109638_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0109638_35	eggNOG-mapper	397290.C810_00404	NA	NA
UHGV-0109638_35	Structural annotation	PF21578	NA	NA
UHGV-0109638_36	PHROG	phrog_9958	NA	unknown function
UHGV-0109638_36	UniRef90	UniRef90_A0A7C9HA55	NA	NA
UHGV-0109638_36	Pfam	PF19789	NA	DUF6273
UHGV-0109638_36	Structural annotation	PF19789	NA	NA
UHGV-0109638_37	PHROG	phrog_26861	NA	unknown function
UHGV-0109638_37	UniRef90	UniRef90_A0A7C9LD13	Single-stranded DNA-binding protein	NA
UHGV-0109638_37	eggNOG-mapper	397290.C810_00400	single-stranded DNA binding	NA
UHGV-0109638_37	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0109638_37	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0109638_37	Structural annotation	PF00436, PF13567, MF_00984, NF004476, COG0629	NA	NA
UHGV-0109638_38	PHROG	phrog_20014	NA	unknown function
UHGV-0109638_38	eggNOG-mapper	1235798.C817_02590	NA	NA
UHGV-0109638_39	PHROG	phrog_6058	NA	unknown function
UHGV-0109638_39	UniRef90	UniRef90_A0A6B9SRW8	Putative Xis protein	NA
UHGV-0109638_39	eggNOG-mapper	411468.CLOSCI_01465	NA	NA
UHGV-0109638_39	Structural annotation	PF12728, NF033787	NA	NA
UHGV-0109638_41	Structural annotation	PF21662, NF038384, TIGR03090	NA	NA
UHGV-0109638_44	UniRef90	UniRef90_UPI000F05D0D4	NA	NA
UHGV-0109638_44	eggNOG-mapper	411470.RUMGNA_02039	NA	NA
UHGV-0109638_44	Pfam	PF10979	NA	DUF2786
UHGV-0109638_45	PHROG	phrog_38056	NA	unknown function
UHGV-0109638_48	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0109638_48	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0109638_48	UniRef90	UniRef90_A0A7C9H8R9	Helix-turn-helix domain-containing protein	NA
UHGV-0109638_48	eggNOG-mapper	641107.CDLVIII_1309	Helix-turn-helix XRE-family like proteins	NA
UHGV-0109638_48	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0109638_48	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109638_48	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0109638_49	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0109638_49	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109638_49	UniRef90	UniRef90_A0A7C9H3W9	Helix-turn-helix domain-containing protein	NA
UHGV-0109638_49	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-0109638_49	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0109638_49	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109638_50	KOfam	K14059	int; integrase	NA
UHGV-0109638_50	PHROG	phrog_1	integrase	integration and excision
UHGV-0109638_50	UniRef90	UniRef90_A0A7C9H3C8	Tyrosine-type recombinase/integrase	NA
UHGV-0109638_50	eggNOG-mapper	1235792.C808_01553	Phage integrase family	NA
UHGV-0109638_50	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0109638_50	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0109638_50	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA