UHGV-0109639

Genome information

Genome length 36,456 bps

CDS count 56

Completeness 89.84% (medium-quality)

geNomad score 0.9576

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109639
vOTU ID	vOTU-042420
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_251471
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.84% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	24
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9576
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	69.97
Jumbo phage	No

Genome content
Genome length	36,456 bps
GC content	52.80%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	92.39%
Average CDS length	606.27 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109639_3	KOfam	K01143	exo; exodeoxyribonuclease (lambda-induced) [EC:3.1.11.3]	NA
UHGV-0109639_3	PHROG	phrog_149	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109639_3	UniRef90	UniRef90_A0A415CGP2	Exonuclease	NA
UHGV-0109639_3	eggNOG-mapper	1094556.MCY_00477	Exonuclease (EC 3.1.11.3) (P03697 of bacteriophage lambda)	NA
UHGV-0109639_3	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0109639_3	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0109639_3	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0109639_4	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0109639_4	UniRef90	UniRef90_A0A415CGJ4	Single-stranded DNA-binding protein	NA
UHGV-0109639_4	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0109639_4	Pfam	PF04404	ERF superfamily	ERF
UHGV-0109639_4	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0109639_4	Structural annotation	PF04404, MF_00984, TIGR00607, COG5055	NA	NA
UHGV-0109639_10	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0109639_10	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0109639_10	UniRef90	UniRef90_UPI00067109C6	helix-turn-helix transcriptional regulator	NA
UHGV-0109639_10	eggNOG-mapper	1203554.HMPREF1476_00235	Peptidase S24-like	NA
UHGV-0109639_10	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109639_10	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0109639_10	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0109639_10	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0109639_11	UniRef90	UniRef90_UPI0006717567	helix-turn-helix domain-containing protein	NA
UHGV-0109639_11	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109639_12	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0109639_14	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0109639_14	PHROG	phrog_5482	NA	unknown function
UHGV-0109639_14	UniRef90	UniRef90_R7IKC5	SF4 helicase domain-containing protein	NA
UHGV-0109639_14	eggNOG-mapper	398578.Daci_1933	DnaB-like helicase C terminal domain	NA
UHGV-0109639_14	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0109639_14	COG	COG0305	Replicative DNA helicase	NA
UHGV-0109639_14	Structural annotation	PF03796, MF_04154, NF004109, COG0305	NA	NA
UHGV-0109639_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0109639_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0109639_16	UniRef90	UniRef90_A0A388SB36	Single-stranded DNA-binding protein	NA
UHGV-0109639_16	eggNOG-mapper	1203554.HMPREF1476_02173	Single-strand binding protein family	NA
UHGV-0109639_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0109639_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0109639_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0109639_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0109639_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0109639_18	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0109639_18	UniRef90	UniRef90_A0A859R947	NA	NA
UHGV-0109639_18	eggNOG-mapper	469610.HMPREF0189_01101	NA	NA
UHGV-0109639_18	Structural annotation	PF06356, MF_04160, NF033179, COG1591	NA	NA
UHGV-0109639_19	Structural annotation	PF06530, NF006930, COG1595	NA	NA
UHGV-0109639_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0109639_22	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109639_22	UniRef90	UniRef90_R5PK02	Putative HNH endonuclease	NA
UHGV-0109639_22	eggNOG-mapper	1111454.HMPREF1250_0245	HNH nucleases	NA
UHGV-0109639_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0109639_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0109639_22	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0109639_23	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0109639_23	UniRef90	UniRef90_UPI000DE972B2	phage terminase small subunit P27 family	NA
UHGV-0109639_23	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0109639_23	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0109639_23	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0109639_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0109639_24	UniRef90	UniRef90_UPI0006710F9A	terminase large subunit	NA
UHGV-0109639_24	eggNOG-mapper	742821.HMPREF9464_01834	Terminase	NA
UHGV-0109639_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0109639_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0109639_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0109639_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0109639_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0109639_25	UniRef90	UniRef90_A0A5B7ZK00	Phage portal protein	NA
UHGV-0109639_25	eggNOG-mapper	742821.HMPREF9464_01833	Phage portal protein	NA
UHGV-0109639_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0109639_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0109639_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0109639_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0109639_26	KOfam	K06904	NA	NA
UHGV-0109639_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0109639_26	UniRef90	UniRef90_A0A411WLS5	HK97 family phage prohead protease	NA
UHGV-0109639_26	eggNOG-mapper	742821.HMPREF9464_01832	Caudovirus prohead serine protease	NA
UHGV-0109639_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0109639_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0109639_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0109639_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0109639_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0109639_27	UniRef90	UniRef90_A0A5B7ZMF6	Phage major capsid protein	NA
UHGV-0109639_27	eggNOG-mapper	1188794.I7HDH9_9CAUD	peptidase activity	NA
UHGV-0109639_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0109639_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0109639_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0109639_29	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0109639_29	UniRef90	UniRef90_A0A6L6YIV6	Phage gp6-like head-tail connector protein	NA
UHGV-0109639_29	eggNOG-mapper	557598.LHK_01771	Phage gp6-like head-tail connector protein	NA
UHGV-0109639_29	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0109639_29	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0109639_29	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0109639_30	PHROG	phrog_25	head closure Hc1	connector
UHGV-0109639_30	UniRef90	UniRef90_A0A2S8IL59	Head-tail adaptor protein	NA
UHGV-0109639_30	eggNOG-mapper	742821.HMPREF9464_01829	Phage head-tail joining protein	NA
UHGV-0109639_30	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0109639_30	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0109639_31	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0109639_31	eggNOG-mapper	1524467.IV04_21490	NA	NA
UHGV-0109639_31	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0109639_31	Structural annotation	TIGR01725	NA	NA
UHGV-0109639_32	PHROG	phrog_209	portal protein	head and packaging
UHGV-0109639_32	UniRef90	UniRef90_Q8HAC7	Sb11	NA
UHGV-0109639_32	eggNOG-mapper	175950.Q8HAC7_9CAUD	NA	NA
UHGV-0109639_32	Structural annotation	PF09646	NA	NA
UHGV-0109639_33	PHROG	phrog_165	tail sheath	tail
UHGV-0109639_33	UniRef90	UniRef90_A0A3D3SFM4	Phage tail protein	NA
UHGV-0109639_33	eggNOG-mapper	742821.HMPREF9464_01827	tail sheath	NA
UHGV-0109639_33	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0109639_33	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0109639_33	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0109639_33	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0109639_34	PHROG	phrog_185	tail tube protein	tail
UHGV-0109639_34	UniRef90	UniRef90_A0A524BF51	Phage tail protein	NA
UHGV-0109639_34	eggNOG-mapper	742821.HMPREF9464_01826	Phage tail tube protein	NA
UHGV-0109639_34	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0109639_34	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0109639_35	PHROG	phrog_166	tail protein	tail
UHGV-0109639_35	UniRef90	UniRef90_A0A5F1H649	Phage tail assembly protein	NA
UHGV-0109639_35	eggNOG-mapper	1224136.AMFN01000003_gene3617	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0109639_35	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0109639_35	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0109639_36	PHROG	phrog_2276	tail length tape measure protein	tail
UHGV-0109639_36	UniRef90	UniRef90_A0A6L6YME8	Phage tail tape measure protein	NA
UHGV-0109639_36	eggNOG-mapper	1122135.KB893169_gene2496	phage tail tape measure protein	NA
UHGV-0109639_36	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0109639_36	COG	COG5412	Phage-related protein	NA
UHGV-0109639_36	Structural annotation	TIGR01760	NA	NA
UHGV-0109639_37	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0109639_37	UniRef90	UniRef90_R7I967	DNA_circ_N domain-containing protein	NA
UHGV-0109639_37	eggNOG-mapper	742821.HMPREF9464_01823	DNA circularisation protein N-terminus	NA
UHGV-0109639_37	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0109639_37	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0109639_37	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0109639_39	PHROG	phrog_177	tail protein	tail
UHGV-0109639_39	UniRef90	UniRef90_R7I5A6	Phage tail protein putative	NA
UHGV-0109639_39	eggNOG-mapper	160488.PP_3863	tail protein	NA
UHGV-0109639_39	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0109639_39	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0109639_39	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0109639_40	UniRef90	UniRef90_UPI001F42D505	phage baseplate assembly protein V	NA
UHGV-0109639_40	eggNOG-mapper	1524467.IV04_21440	Bacteriophage Mu Gp45 protein	NA
UHGV-0109639_40	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0109639_40	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0109639_40	COG	COG4384	NA	NA
UHGV-0109639_40	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0109639_41	PHROG	phrog_180	tail protein	tail
UHGV-0109639_41	UniRef90	UniRef90_UPI000E511FD8	phage GP46 family protein	NA
UHGV-0109639_41	eggNOG-mapper	556268.OFAG_02347	Phage protein GP46	NA
UHGV-0109639_41	Pfam	PF07409	NA	GP46
UHGV-0109639_41	COG	COG4381	NA	NA
UHGV-0109639_41	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0109639_42	PHROG	phrog_6	baseplate protein	tail
UHGV-0109639_42	UniRef90	UniRef90_UPI000F604B2E	baseplate J/gp47 family protein	NA
UHGV-0109639_42	eggNOG-mapper	882.DVU_2851	Baseplate J-like protein	NA
UHGV-0109639_42	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0109639_42	COG	COG3299	NA	NA
UHGV-0109639_42	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0109639_43	PHROG	phrog_203	tail protein	tail
UHGV-0109639_43	UniRef90	UniRef90_UPI000F60B3C5	NA	NA
UHGV-0109639_43	eggNOG-mapper	1268068.PG5_42230	NA	NA
UHGV-0109639_43	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0109639_43	COG	COG3778	NA	NA
UHGV-0109639_43	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0109639_44	PHROG	phrog_9116	tail protein	tail
UHGV-0109639_44	UniRef90	UniRef90_UPI000F60BD24	phage tail protein	NA
UHGV-0109639_44	eggNOG-mapper	556268.OFAG_00131	Phage Tail Collar Domain	NA
UHGV-0109639_44	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0109639_44	COG	COG4675	Phage tail collar domain	NA
UHGV-0109639_44	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0109639_45	eggNOG-mapper	556268.OFAG_00131	Phage Tail Collar Domain	NA
UHGV-0109639_45	COG	COG4675	Phage tail collar domain	NA
UHGV-0109639_46	PHROG	phrog_4912	tail fiber assembly	tail
UHGV-0109639_46	UniRef90	UniRef90_UPI000F612056	phage tail assembly chaperone	NA
UHGV-0109639_46	eggNOG-mapper	762966.HMPREF9439_01057	Phage tail assembly chaperone protein	NA
UHGV-0109639_46	Pfam	PF16778	Phage tail assembly chaperone protein	Phage_tail_APC
UHGV-0109639_46	Structural annotation	PF16778	NA	NA
UHGV-0109639_48	PHROG	phrog_199	holin	lysis
UHGV-0109639_48	UniRef90	UniRef90_R7I745	Toxin secretion/phage lysis holin	NA
UHGV-0109639_48	eggNOG-mapper	742823.HMPREF9465_00190	Bacteriophage holin family	NA
UHGV-0109639_48	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0109639_48	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0109639_48	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0109639_50	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0109639_50	PHROG	phrog_7	endolysin	lysis
UHGV-0109639_50	UniRef90	UniRef90_R7I6I8	Lysozyme	NA
UHGV-0109639_50	eggNOG-mapper	406817.XNC1_2340	lysozyme	NA
UHGV-0109639_50	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0109639_50	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0109639_50	HAMAP	MF_04110	Endolysin	NA
UHGV-0109639_50	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0109639_53	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0109639_53	PHROG	phrog_7	endolysin	lysis
UHGV-0109639_53	UniRef90	UniRef90_UPI000F610005	lysozyme	NA
UHGV-0109639_53	eggNOG-mapper	1122599.AUGR01000011_gene4029	Phage lysozyme	NA
UHGV-0109639_53	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0109639_53	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0109639_53	HAMAP	MF_04110	Endolysin	NA
UHGV-0109639_53	Structural annotation	PF00959, MF_04110, COG3772	NA	NA
UHGV-0109639_55	KOfam	K12341	yadA; adhesin YadA	NA
UHGV-0109639_55	UniRef90	UniRef90_UPI000F614CAC	YadA-like family protein	NA
UHGV-0109639_55	eggNOG-mapper	591001.Acfer_1872	Coiled stalk of trimeric autotransporter adhesin	NA
UHGV-0109639_55	Pfam	PF05662	Coiled stalk of trimeric autotransporter adhesin	YadA_stalk
UHGV-0109639_55	Pfam	PF03895	YadA-like membrane anchor domain	YadA_anchor
UHGV-0109639_55	COG	COG5295	Autotransporter adhesin	NA
UHGV-0109639_55	Structural annotation	PF03895, PF00395, NF040983, COG5295	NA	NA
UHGV-0109639_56	KOfam	K07450	K07450; putative resolvase	NA
UHGV-0109639_56	PHROG	phrog_6620	transposase	integration and excision
UHGV-0109639_56	UniRef90	UniRef90_A0A388S9M6	IS607 family transposase	NA
UHGV-0109639_56	eggNOG-mapper	498761.HM1_1453	protein MJ0014 - Methanococcus jannaschii gi 1590824 gb AAB97992.1 (U67460) conserved	NA
UHGV-0109639_56	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0109639_56	NCBIFam	NF033518.0	IS607 family transposase	NA
UHGV-0109639_56	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0109639_56	Structural annotation	PF00239, PF12728, NF033518, COG2452	NA	NA