UHGV-0109658

Genome information

Genome length 39,178 bps

CDS count 56

Completeness 93.76% (high-quality)

geNomad score 0.9788

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109658
vOTU ID	vOTU-065639
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_235480
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	93.76% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	22
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9788
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	66.32
Jumbo phage	No

Genome content
Genome length	39,178 bps
GC content	39.32%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	56
CDS density	90.65%
Average CDS length	636.54 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109658_1	KOfam	K14059	int; integrase	NA
UHGV-0109658_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0109658_1	UniRef90	UniRef90_A0A6L6L8L1	Tyrosine-type recombinase/integrase	NA
UHGV-0109658_1	eggNOG-mapper	1304866.K413DRAFT_1180	Belongs to the 'phage' integrase family	NA
UHGV-0109658_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0109658_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0109658_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0109658_1	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0109658_2	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0109658_2	PHROG	phrog_16726	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109658_2	UniRef90	UniRef90_A0A3R6CIB5	HNH endonuclease	NA
UHGV-0109658_2	eggNOG-mapper	386415.NT01CX_1757	HNH endonuclease	NA
UHGV-0109658_2	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0109658_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0109658_2	Structural annotation	PF01844, NF040563, COG1403	NA	NA
UHGV-0109658_3	PHROG	phrog_87	metallo-protease	other
UHGV-0109658_3	UniRef90	UniRef90_A0A3R5ZQW8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0109658_3	eggNOG-mapper	1235802.C823_04751	IrrE N-terminal-like domain	NA
UHGV-0109658_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0109658_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0109658_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0109658_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109658_4	UniRef90	UniRef90_A0A3A6GF44	XRE family transcriptional regulator	NA
UHGV-0109658_4	eggNOG-mapper	1235802.C823_04750	Helix-turn-helix XRE-family like proteins	NA
UHGV-0109658_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109658_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109658_4	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0109658_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109658_5	UniRef90	UniRef90_UPI00156E2D91	helix-turn-helix domain-containing protein	NA
UHGV-0109658_5	eggNOG-mapper	655812.HMPREF0061_0222	Helix-turn-helix XRE-family like proteins	NA
UHGV-0109658_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109658_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109658_5	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0109658_7	UniRef90	UniRef90_UPI001C033D96	helix-turn-helix domain-containing protein	NA
UHGV-0109658_7	Structural annotation	PF13443, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0109658_8	Structural annotation	PF11127	NA	NA
UHGV-0109658_10	PHROG	phrog_1499	NA	unknown function
UHGV-0109658_10	UniRef90	UniRef90_A0A316M6R3	AAA_23 domain-containing protein	NA
UHGV-0109658_10	eggNOG-mapper	742733.HMPREF9469_01850	DNA recombination	NA
UHGV-0109658_10	PADLOC	AAA_15	NA	NA
UHGV-0109658_10	Pfam	PF13476	AAA domain	AAA_23
UHGV-0109658_10	COG	COG0497	DNA repair ATPase RecN	NA
UHGV-0109658_10	Structural annotation	PF11398, MF_00365, NF008121, COG0497	NA	NA
UHGV-0109658_11	PHROG	phrog_561	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0109658_11	UniRef90	UniRef90_A0A6N7W7U3	Recombinase RecT	NA
UHGV-0109658_11	eggNOG-mapper	33035.JPJF01000071_gene4462	NA	NA
UHGV-0109658_11	Structural annotation	TIGR01913, COG3723	NA	NA
UHGV-0109658_12	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109658_12	UniRef90	UniRef90_A0A174WPU3	Prophage Lp1 protein 19	NA
UHGV-0109658_12	eggNOG-mapper	742733.HMPREF9469_01848	NA	NA
UHGV-0109658_12	Pfam	PF12684	NA	DUF3799
UHGV-0109658_12	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0109658_12	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0109658_13	PHROG	phrog_7566	NA	unknown function
UHGV-0109658_13	UniRef90	UniRef90_A0A373CFM5	ClpX-type ZB domain-containing protein	NA
UHGV-0109658_13	eggNOG-mapper	1304866.K413DRAFT_3017	NA	NA
UHGV-0109658_14	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0109658_14	UniRef90	UniRef90_UPI0018A6ABED	Rha family transcriptional regulator	NA
UHGV-0109658_14	eggNOG-mapper	536232.CLM_1619	ORF6C domain	NA
UHGV-0109658_14	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0109658_14	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0109658_14	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0109658_14	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0109658_14	Structural annotation	PF10552, PF09669, TIGR02681, COG3646	NA	NA
UHGV-0109658_15	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0109658_15	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0109658_15	UniRef90	UniRef90_A0A6N3H631	Endodeoxyribonuclease RusA	NA
UHGV-0109658_15	eggNOG-mapper	1399942.U3PDU0_9CAUD	magnesium ion binding	NA
UHGV-0109658_15	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0109658_16	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0109658_16	UniRef90	UniRef90_A0A174WT25	Replication initiator A domain-containing protein	NA
UHGV-0109658_16	eggNOG-mapper	742733.HMPREF9469_01845	NA	NA
UHGV-0109658_16	Structural annotation	PF10771, MF_01177, TIGR01714, COG5529	NA	NA
UHGV-0109658_17	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0109658_17	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0109658_17	UniRef90	UniRef90_A0A1Q6KIH9	IstB_IS21 domain-containing protein	NA
UHGV-0109658_17	eggNOG-mapper	742733.HMPREF9469_01844	IstB-like ATP binding protein	NA
UHGV-0109658_17	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0109658_17	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0109658_17	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0109658_22	UniRef90	UniRef90_A0A0F0C7A4	NA	NA
UHGV-0109658_22	eggNOG-mapper	476272.RUMHYD_03348	NA	NA
UHGV-0109658_23	PHROG	phrog_8684	NA	unknown function
UHGV-0109658_23	UniRef90	UniRef90_A0A6L6XDP0	YopX domain-containing protein	NA
UHGV-0109658_23	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0109658_23	Pfam	PF09643	YopX protein	YopX
UHGV-0109658_23	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0109658_23	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0109658_25	PHROG	phrog_874	NA	unknown function
UHGV-0109658_25	UniRef90	UniRef90_A0A6N7W7Q7	ASCH domain-containing protein	NA
UHGV-0109658_25	eggNOG-mapper	411468.CLOSCI_00298	NA	NA
UHGV-0109658_25	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0109658_27	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0109658_27	UniRef90	UniRef90_A0A6L6XK67	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0109658_27	eggNOG-mapper	1410650.JHWL01000037_gene617	sulfate reduction	NA
UHGV-0109658_27	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0109658_27	Structural annotation	PF01507, MF_00063, NF002537, COG0175	NA	NA
UHGV-0109658_29	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0109658_29	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0109658_29	UniRef90	UniRef90_A0A3R6CGB9	Phosphoadenosine phosphosulfate reductase	NA
UHGV-0109658_29	eggNOG-mapper	1235802.C823_04696	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0109658_29	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0109658_29	Structural annotation	PF01507, MF_00063, NF010367, COG0175	NA	NA
UHGV-0109658_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0109658_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0109658_30	UniRef90	UniRef90_A0A1C5S2H5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0109658_30	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0109658_30	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0109658_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0109658_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0109658_30	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0109658_33	PHROG	phrog_23933	NA	unknown function
UHGV-0109658_33	UniRef90	UniRef90_R7JBB8	Adenosylmethionine-8-amino-7-oxononanoate aminotransferase	NA
UHGV-0109658_33	eggNOG-mapper	1415775.U729_2603	NA	NA
UHGV-0109658_33	Structural annotation	PF00211, NF033576, COG2114	NA	NA
UHGV-0109658_34	eggNOG-mapper	483218.BACPEC_01222	NA	NA
UHGV-0109658_35	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0109658_35	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-0109658_35	UniRef90	UniRef90_UPI00164AF8F0	terminase small subunit	NA
UHGV-0109658_35	eggNOG-mapper	1304866.K413DRAFT_3033	terminase, small subunit	NA
UHGV-0109658_35	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0109658_35	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0109658_35	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0109658_35	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-0109658_36	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0109658_36	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0109658_36	UniRef90	UniRef90_R7N5K9	Terminase_3 domain-containing protein	NA
UHGV-0109658_36	eggNOG-mapper	1235790.C805_00040	Phage terminase large subunit	NA
UHGV-0109658_36	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0109658_36	COG	COG1783	Phage terminase large subunit	NA
UHGV-0109658_36	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0109658_37	PHROG	phrog_533	portal protein	head and packaging
UHGV-0109658_37	UniRef90	UniRef90_A0A3E3HWH0	Phage portal protein	NA
UHGV-0109658_37	eggNOG-mapper	645991.Sgly_0336	NA	NA
UHGV-0109658_37	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0109658_38	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0109658_38	UniRef90	UniRef90_UPI00164C8416	polymorphic toxin type 50 domain-containing protein	NA
UHGV-0109658_38	eggNOG-mapper	1292035.H476_1017	NA	NA
UHGV-0109658_38	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0109658_38	COG	COG2369	NA	NA
UHGV-0109658_38	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0109658_40	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0109658_40	UniRef90	UniRef90_UPI00164B0393	phage scaffolding protein	NA
UHGV-0109658_40	eggNOG-mapper	411460.RUMTOR_02088	COG NOG36366 non supervised orthologous group	NA
UHGV-0109658_40	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0109658_40	Structural annotation	PF06810	NA	NA
UHGV-0109658_41	PHROG	phrog_212	major head protein	head and packaging
UHGV-0109658_41	UniRef90	UniRef90_A0A412FGZ1	Phage capsid protein	NA
UHGV-0109658_41	eggNOG-mapper	318464.IO99_00580	NA	NA
UHGV-0109658_41	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-0109658_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0109658_43	PHROG	phrog_3366	NA	unknown function
UHGV-0109658_43	Pfam	PF20536	NA	DUF6751
UHGV-0109658_43	Structural annotation	PF20536, TIGR02126	NA	NA
UHGV-0109658_44	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0109658_44	UniRef90	UniRef90_UPI001A9B9821	capsid protein	NA
UHGV-0109658_44	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-0109658_44	Structural annotation	PF11114	NA	NA
UHGV-0109658_45	PHROG	phrog_3266	tail completion	connector
UHGV-0109658_45	Structural annotation	PF12691	NA	NA
UHGV-0109658_46	PHROG	phrog_3099	NA	unknown function
UHGV-0109658_46	eggNOG-mapper	1125725.HMPREF1325_1337	NA	NA
UHGV-0109658_46	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0109658_47	Structural annotation	PF20378	NA	NA
UHGV-0109658_48	PHROG	phrog_706	NA	unknown function
UHGV-0109658_48	UniRef90	UniRef90_A0A1C5VU91	Bacteriophage Gp15 protein	NA
UHGV-0109658_48	eggNOG-mapper	1125725.HMPREF1325_1338	Bacteriophage Gp15 protein	NA
UHGV-0109658_48	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0109658_48	Structural annotation	PF06854	NA	NA
UHGV-0109658_49	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0109658_49	eggNOG-mapper	1123309.AQYB01000018_gene819	Phage tail tape measure protein TP901	NA
UHGV-0109658_49	COG	COG5412	Phage-related protein	NA
UHGV-0109658_49	Structural annotation	MF_04138, COG5281	NA	NA
UHGV-0109658_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0109658_50	UniRef90	UniRef90_A0A1I3HK03	Phage tail protein	NA
UHGV-0109658_50	eggNOG-mapper	411470.RUMGNA_02077	COG NOG18823 non supervised orthologous group	NA
UHGV-0109658_50	COG	COG4722	Phage-related protein YomH	NA
UHGV-0109658_50	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0109658_51	PHROG	phrog_538	minor tail protein	tail
UHGV-0109658_51	UniRef90	UniRef90_A0A1I3HJS7	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0109658_51	eggNOG-mapper	1121087.AUCK01000002_gene2497	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0109658_51	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0109658_51	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0109658_52	PHROG	phrog_1220	head protein	head and packaging
UHGV-0109658_52	eggNOG-mapper	1211817.CCAT010000079_gene1381	COG NOG18825 non supervised orthologous group	NA
UHGV-0109658_52	Structural annotation	PF20747, PF07210, TIGR04134, COG2512	NA	NA
UHGV-0109658_54	PHROG	phrog_1863	NA	unknown function
UHGV-0109658_54	eggNOG-mapper	693746.OBV_18260	NA	NA
UHGV-0109658_55	PHROG	phrog_443	holin	lysis
UHGV-0109658_55	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0109658_55	eggNOG-mapper	626523.GCWU000342_01012	Putative lactococcus lactis phage r1t holin	NA
UHGV-0109658_55	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0109658_55	Structural annotation	PF16945	NA	NA
UHGV-0109658_56	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0109658_56	PHROG	phrog_7	endolysin	lysis
UHGV-0109658_56	UniRef90	UniRef90_A0A3R6HYB3	Lysozyme	NA
UHGV-0109658_56	eggNOG-mapper	693746.OBV_20240	Phage lysozyme	NA
UHGV-0109658_56	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0109658_56	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0109658_56	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0109658_56	HAMAP	MF_04110	Endolysin	NA
UHGV-0109658_56	Structural annotation	PF01471, PF00959, MF_04110, COG3772, COG3409	NA	NA