UHGV-0109685

Genome information

Genome length 30,446 bps

CDS count 45

Completeness 77.37% (medium-quality)

geNomad score 0.9793

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109685
vOTU ID	vOTU-037416
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_244256
BioSample	SAMEA3708811
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	77.37% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	18
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9793
Virus hallmark genes (geNomad)	13
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	47.66
Jumbo phage	No

Genome content
Genome length	30,446 bps
GC content	50.43%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	45
CDS density	92.11%
Average CDS length	627.87 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109685_1	PHROG	phrog_17147	NA	unknown function
UHGV-0109685_1	eggNOG-mapper	411459.RUMOBE_01720	NA	NA
UHGV-0109685_2	PHROG	phrog_16573	NA	unknown function
UHGV-0109685_2	UniRef90	UniRef90_A5ZRU3	BppU_N domain-containing protein	NA
UHGV-0109685_2	eggNOG-mapper	411459.RUMOBE_01721	NA	NA
UHGV-0109685_2	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0109685_2	Structural annotation	PF10651, NF010435	NA	NA
UHGV-0109685_3	PHROG	phrog_11105	NA	unknown function
UHGV-0109685_4	PHROG	phrog_18110	NA	unknown function
UHGV-0109685_4	UniRef90	UniRef90_UPI001D08457A	phage tail protein	NA
UHGV-0109685_4	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-0109685_4	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0109685_4	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0109685_4	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0109685_4	COG	COG4926	Phage-related protein	NA
UHGV-0109685_4	Structural annotation	PF06605, PF18994, TIGR01665, COG4926	NA	NA
UHGV-0109685_5	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0109685_5	UniRef90	UniRef90_A0A174MA27	Phage-related protein	NA
UHGV-0109685_5	eggNOG-mapper	411459.RUMOBE_01724	phage tail	NA
UHGV-0109685_5	Pfam	PF20753	Phage tail C-terminal domain	DUF6558_C
UHGV-0109685_5	COG	COG4722	Phage-related protein YomH	NA
UHGV-0109685_5	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0109685_6	KOfam	K20254	PLIN4; perilipin-4	NA
UHGV-0109685_6	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0109685_6	UniRef90	UniRef90_A5ZRU7	Phage tail tape measure protein, TP901 family	NA
UHGV-0109685_6	eggNOG-mapper	411459.RUMOBE_01725	Phage tail tape measure protein, TP901 family	NA
UHGV-0109685_6	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0109685_6	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0109685_6	COG	COG5283	Phage-related tail protein	NA
UHGV-0109685_7	PHROG	phrog_4704	tail length tape measure protein	tail
UHGV-0109685_7	eggNOG-mapper	411459.RUMOBE_01725	Phage tail tape measure protein, TP901 family	NA
UHGV-0109685_7	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0109685_7	COG	COG5283	Phage-related tail protein	NA
UHGV-0109685_8	PHROG	phrog_25901	NA	unknown function
UHGV-0109685_8	eggNOG-mapper	411459.RUMOBE_01726	NA	NA
UHGV-0109685_9	PHROG	phrog_13494	NA	unknown function
UHGV-0109685_9	eggNOG-mapper	411459.RUMOBE_01727	NA	NA
UHGV-0109685_9	Structural annotation	PF16462	NA	NA
UHGV-0109685_10	PHROG	phrog_88	major tail protein	tail
UHGV-0109685_10	UniRef90	UniRef90_A0A174MD18	Phage major tail protein, phi13 family	NA
UHGV-0109685_10	eggNOG-mapper	411459.RUMOBE_01728	phage major tail protein, phi13 family	NA
UHGV-0109685_10	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0109685_10	COG	COG5492	NA	NA
UHGV-0109685_10	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0109685_11	PHROG	phrog_78	tail terminator	connector
UHGV-0109685_11	UniRef90	UniRef90_I2E8V8	Gp10	NA
UHGV-0109685_11	eggNOG-mapper	195103.CPF_1580	NA	NA
UHGV-0109685_11	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0109685_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0109685_12	UniRef90	UniRef90_A0A174MCG9	Phage protein, HK97 gp10 family	NA
UHGV-0109685_12	eggNOG-mapper	411459.RUMOBE_01730	Phage protein, HK97 gp10 family	NA
UHGV-0109685_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0109685_12	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0109685_13	PHROG	phrog_25	head closure Hc1	connector
UHGV-0109685_13	UniRef90	UniRef90_A0A174MCN9	Bacteriophage head-tail adaptor	NA
UHGV-0109685_13	eggNOG-mapper	411459.RUMOBE_01731	Phage head-tail adaptor	NA
UHGV-0109685_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0109685_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0109685_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0109685_14	UniRef90	UniRef90_A0A3R6UCP2	Phage gp6-like head-tail connector protein	NA
UHGV-0109685_14	eggNOG-mapper	411459.RUMOBE_01732	NA	NA
UHGV-0109685_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0109685_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0109685_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0109685_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-0109685_15	UniRef90	UniRef90_A0A174MCH2	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0109685_15	eggNOG-mapper	411459.RUMOBE_01733	phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0109685_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0109685_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0109685_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0109685_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0109685_16	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0109685_16	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0109685_16	UniRef90	UniRef90_A0A174M8P6	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0109685_16	eggNOG-mapper	411459.RUMOBE_01734	Belongs to the peptidase S14 family	NA
UHGV-0109685_16	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0109685_16	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0109685_16	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0109685_17	PHROG	phrog_12	portal protein	head and packaging
UHGV-0109685_17	UniRef90	UniRef90_A5ZRV7	Phage portal protein, HK97 family	NA
UHGV-0109685_17	eggNOG-mapper	411459.RUMOBE_01735	NA	NA
UHGV-0109685_17	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0109685_17	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0109685_17	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0109685_17	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0109685_18	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0109685_18	UniRef90	UniRef90_A5ZRV9	Putative phage terminase, large subunit	NA
UHGV-0109685_18	eggNOG-mapper	411459.RUMOBE_01737	NA	NA
UHGV-0109685_18	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0109685_18	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0109685_18	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0109685_18	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0109685_19	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0109685_19	UniRef90	UniRef90_A5ZRW0	Phage terminase, small subunit, P27 family	NA
UHGV-0109685_19	eggNOG-mapper	411459.RUMOBE_01738	phage terminase, small subunit	NA
UHGV-0109685_19	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0109685_19	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0109685_19	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0109685_19	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0109685_20	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109685_20	UniRef90	UniRef90_A0A3R7BR43	HNH endonuclease	NA
UHGV-0109685_20	eggNOG-mapper	411459.RUMOBE_01739	NA	NA
UHGV-0109685_20	Structural annotation	PF05766	NA	NA
UHGV-0109685_21	PHROG	phrog_1558	NA	unknown function
UHGV-0109685_21	UniRef90	UniRef90_I2E8Y5	Gp40	NA
UHGV-0109685_21	eggNOG-mapper	411459.RUMOBE_01740	NA	NA
UHGV-0109685_21	Structural annotation	PF08281, MF_00674, TIGR01636, COG2739	NA	NA
UHGV-0109685_22	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0109685_22	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0109685_22	UniRef90	UniRef90_A0A174RP97	Single-stranded DNA-binding protein	NA
UHGV-0109685_22	eggNOG-mapper	1256908.HMPREF0373_03133	Single-stranded DNA-binding protein	NA
UHGV-0109685_22	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0109685_22	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0109685_22	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0109685_22	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0109685_22	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0109685_25	Structural annotation	PF18350, MF_00369, COG2139	NA	NA
UHGV-0109685_27	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-0109685_28	PHROG	phrog_1315	NA	unknown function
UHGV-0109685_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0109685_30	PHROG	phrog_15982	NA	unknown function
UHGV-0109685_30	UniRef90	UniRef90_A5ZRX0	ParB domain-containing protein	NA
UHGV-0109685_30	eggNOG-mapper	411459.RUMOBE_01748	ParB-like nuclease domain	NA
UHGV-0109685_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0109685_30	Pfam	PF12961	NA	DUF3850
UHGV-0109685_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0109685_31	Structural annotation	PF10627	NA	NA
UHGV-0109685_32	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0109685_32	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0109685_32	UniRef90	UniRef90_A0A1Q6KU49	AAA_31 domain-containing protein	NA
UHGV-0109685_32	eggNOG-mapper	411470.RUMGNA_00210	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0109685_32	Pfam	PF13614	AAA domain	AAA_31
UHGV-0109685_32	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0109685_32	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0109685_33	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0109685_34	PHROG	phrog_824	NA	unknown function
UHGV-0109685_34	UniRef90	UniRef90_A0A412ELZ0	VRR-NUC domain-containing protein	NA
UHGV-0109685_34	eggNOG-mapper	411459.RUMOBE_01753	VRR-NUC domain	NA
UHGV-0109685_34	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0109685_35	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0109685_35	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0109685_35	eggNOG-mapper	411459.RUMOBE_01756	COG NOG14934 non supervised orthologous group	NA
UHGV-0109685_35	Structural annotation	PF21578	NA	NA
UHGV-0109685_41	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0109685_41	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109685_41	UniRef90	UniRef90_A0A417WEP2	Helix-turn-helix domain-containing protein	NA
UHGV-0109685_41	eggNOG-mapper	411470.RUMGNA_00191	DNA-binding helix-turn-helix protein	NA
UHGV-0109685_41	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0109685_41	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109685_41	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0109685_44	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-0109685_44	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109685_44	UniRef90	UniRef90_A0A412ELZ3	XRE family transcriptional regulator	NA
UHGV-0109685_44	eggNOG-mapper	411470.RUMGNA_00189	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0109685_44	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109685_44	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0109685_45	PHROG	phrog_37629	NA	unknown function
UHGV-0109685_45	eggNOG-mapper	411468.CLOSCI_01454	NA	NA