UHGV-0109713

Genome information

Genome length 41,954 bps

CDS count 55

Completeness 100.00% (complete)

geNomad score 0.9659

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109713
vOTU ID	vOTU-045614
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_258501
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	19
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9659
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	67.15
Jumbo phage	No

Genome content
Genome length	41,954 bps
GC content	28.17%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	90.59%
Average CDS length	693.33 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109713_1	PHROG	phrog_9996	NA	unknown function
UHGV-0109713_1	UniRef90	UniRef90_UPI0011071500	replication-relaxation family protein	NA
UHGV-0109713_1	Pfam	PF13814	Replication-relaxation	Replic_Relax
UHGV-0109713_1	Structural annotation	PF13814, MF_01819, NF041423, COG1733	NA	NA
UHGV-0109713_2	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0109713_2	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0109713_2	UniRef90	UniRef90_A0A267MQD1	FtsK domain-containing protein	NA
UHGV-0109713_2	eggNOG-mapper	742743.HMPREF9453_00743	FtsK SpoIIIE family protein	NA
UHGV-0109713_2	PADLOC	SspH_00004	SspH	SSP
UHGV-0109713_2	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0109713_2	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0109713_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0109713_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0109713_3	UniRef90	UniRef90_UPI0011073ABB	recombinase family protein	NA
UHGV-0109713_3	eggNOG-mapper	1151292.QEW_0309	Resolvase, N terminal domain	NA
UHGV-0109713_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0109713_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0109713_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0109713_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0109713_3	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0109713_4	KOfam	K07727	K07727; putative transcriptional regulator	NA
UHGV-0109713_4	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0109713_4	UniRef90	UniRef90_UPI0011069CE3	helix-turn-helix domain-containing protein	NA
UHGV-0109713_4	eggNOG-mapper	742741.HMPREF9475_00399	Helix-turn-helix XRE-family like proteins	NA
UHGV-0109713_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109713_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0109713_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0109713_6	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0109713_6	UniRef90	UniRef90_UPI0011061316	helix-turn-helix domain-containing protein	NA
UHGV-0109713_6	eggNOG-mapper	411468.CLOSCI_01457	Helix-turn-helix XRE-family like proteins	NA
UHGV-0109713_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109713_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109713_6	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0109713_9	UniRef90	UniRef90_UPI001105B88F	Rho termination factor N-terminal domain-containing protein	NA
UHGV-0109713_9	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-0109713_11	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0109713_11	UniRef90	UniRef90_A0A1I5LZL1	Relaxase/Mobilisation nuclease domain-containing protein	NA
UHGV-0109713_11	eggNOG-mapper	1196322.A370_05744	NA	NA
UHGV-0109713_11	Structural annotation	PF21578	NA	NA
UHGV-0109713_12	PHROG	phrog_1455	NA	unknown function
UHGV-0109713_12	eggNOG-mapper	1280692.AUJL01000009_gene2996	NA	NA
UHGV-0109713_12	Pfam	PF21793	NA	DUF6877
UHGV-0109713_13	PHROG	phrog_824	NA	unknown function
UHGV-0109713_13	UniRef90	UniRef90_UPI001105A33E	VRR-NUC domain-containing protein	NA
UHGV-0109713_13	eggNOG-mapper	411468.CLOSCI_00556	VRR_NUC	NA
UHGV-0109713_13	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0109713_14	PHROG	phrog_1974	NA	unknown function
UHGV-0109713_14	UniRef90	UniRef90_A0A371ISD9	Nucleoid-associated protein	NA
UHGV-0109713_14	eggNOG-mapper	1301100.HG529375_gene4038	37-kD nucleoid-associated bacterial protein	NA
UHGV-0109713_14	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-0109713_14	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-0109713_14	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-0109713_15	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0109713_15	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0109713_15	UniRef90	UniRef90_UPI001AE15354	phage antirepressor KilAC domain-containing protein	NA
UHGV-0109713_15	eggNOG-mapper	1415775.U729_2580	BRO family, N-terminal domain	NA
UHGV-0109713_15	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0109713_15	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0109713_15	COG	COG3617	Prophage antirepressor	NA
UHGV-0109713_15	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0109713_17	PHROG	phrog_5164	NA	unknown function
UHGV-0109713_17	Structural annotation	PF06892	NA	NA
UHGV-0109713_20	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0109713_20	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0109713_20	UniRef90	UniRef90_UPI0011060A1D	single-stranded DNA-binding protein	NA
UHGV-0109713_20	eggNOG-mapper	445973.CLOBAR_00026	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0109713_20	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0109713_20	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0109713_20	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0109713_20	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0109713_20	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0109713_23	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-0109713_23	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0109713_23	UniRef90	UniRef90_A0A415HVL0	Helicase	NA
UHGV-0109713_23	eggNOG-mapper	592028.GCWU000321_01359	DEAD-like helicases superfamily	NA
UHGV-0109713_23	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0109713_23	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0109713_23	Structural annotation	PF00176, MF_00661, TIGR04095, COG1061	NA	NA
UHGV-0109713_24	KOfam	K18960	gp49; recombination endonuclease VII	NA
UHGV-0109713_24	PHROG	phrog_2914	endonuclease VII	DNA, RNA and nucleotide metabolism
UHGV-0109713_24	UniRef90	UniRef90_UPI0009F941E5	endonuclease VII domain-containing protein	NA
UHGV-0109713_24	eggNOG-mapper	110457.Q9MBZ1_9CAUD	endonuclease activity	NA
UHGV-0109713_24	Pfam	PF02945	Recombination endonuclease VII	Endonuclease_7
UHGV-0109713_24	Structural annotation	PF02945	NA	NA
UHGV-0109713_25	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0109713_25	UniRef90	UniRef90_A0A496P830	Helicase (Fragment)	NA
UHGV-0109713_25	eggNOG-mapper	592028.GCWU000321_01359	DEAD-like helicases superfamily	NA
UHGV-0109713_25	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0109713_25	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0109713_25	Structural annotation	PF16203, MF_00967	NA	NA
UHGV-0109713_26	KOfam	K24451	zim; modification methylase	NA
UHGV-0109713_26	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0109713_26	UniRef90	UniRef90_A0A374BT14	Methyltransferase	NA
UHGV-0109713_26	eggNOG-mapper	1120971.AUCA01000053_gene371	DNA methylase	NA
UHGV-0109713_26	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-0109713_26	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0109713_26	COG	COG0863	DNA modification methylase	NA
UHGV-0109713_26	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0109713_28	Structural annotation	PF18482	NA	NA
UHGV-0109713_29	PHROG	phrog_98	NA	unknown function
UHGV-0109713_29	UniRef90	UniRef90_A0A1C5YXI2	YopX protein	NA
UHGV-0109713_29	eggNOG-mapper	545697.HMPREF0216_02825	YopX protein	NA
UHGV-0109713_29	Pfam	PF09643	YopX protein	YopX
UHGV-0109713_29	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0109713_29	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0109713_30	eggNOG-mapper	573061.Clocel_3576	NA	NA
UHGV-0109713_31	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0109713_31	UniRef90	UniRef90_A0A316S5Y3	Sigma70_r4 domain-containing protein	NA
UHGV-0109713_31	eggNOG-mapper	1151292.QEW_0398	sigma factor activity	NA
UHGV-0109713_31	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0109713_31	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0109713_31	Structural annotation	PF05263, TIGR01636	NA	NA
UHGV-0109713_32	PHROG	phrog_9079	NA	unknown function
UHGV-0109713_32	eggNOG-mapper	445973.CLOBAR_02450	NA	NA
UHGV-0109713_34	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109713_34	UniRef90	UniRef90_UPI000543E00A	HNH endonuclease	NA
UHGV-0109713_34	eggNOG-mapper	768486.EHR_09545	HNH nucleases	NA
UHGV-0109713_34	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0109713_35	PHROG	phrog_1271	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109713_35	UniRef90	UniRef90_UPI0014858467	HNH endonuclease	NA
UHGV-0109713_35	eggNOG-mapper	634956.Geoth_0783	HNH endonuclease	NA
UHGV-0109713_35	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0109713_35	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0109713_36	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0109713_36	UniRef90	UniRef90_UPI0003D5A199	phage terminase small subunit P27 family	NA
UHGV-0109713_36	eggNOG-mapper	1121342.AUCO01000002_gene887	Phage terminase, small subunit	NA
UHGV-0109713_36	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0109713_36	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0109713_36	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0109713_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0109713_37	UniRef90	UniRef90_UPI0011061D03	terminase large subunit	NA
UHGV-0109713_37	eggNOG-mapper	1211817.CCAT010000053_gene2129	Phage Terminase	NA
UHGV-0109713_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0109713_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0109713_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0109713_37	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0109713_38	PHROG	phrog_12	portal protein	head and packaging
UHGV-0109713_38	UniRef90	UniRef90_UPI00148519DF	phage portal protein	NA
UHGV-0109713_38	eggNOG-mapper	86416.Clopa_0339	Phage portal protein	NA
UHGV-0109713_38	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0109713_38	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0109713_38	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0109713_38	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0109713_39	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0109713_39	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0109713_39	UniRef90	UniRef90_A0A1I3QH58	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0109713_39	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0109713_39	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0109713_39	Pfam	PF21349	Rubrerythrin, rubredoxin-like domain	RUBY_RBDX
UHGV-0109713_39	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0109713_39	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0109713_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-0109713_40	UniRef90	UniRef90_UPI001107332E	phage major capsid protein	NA
UHGV-0109713_40	eggNOG-mapper	349161.Dred_2604	Phage capsid family	NA
UHGV-0109713_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0109713_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0109713_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0109713_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0109713_41	PHROG	phrog_749	NA	unknown function
UHGV-0109713_41	UniRef90	UniRef90_A0A1I3QJG6	Phage gp6-like head-tail connector protein	NA
UHGV-0109713_42	PHROG	phrog_5635	head-tail adaptor	connector
UHGV-0109713_42	UniRef90	UniRef90_UPI0011070497	phage head closure protein	NA
UHGV-0109713_42	eggNOG-mapper	1220589.CD32_01710	NA	NA
UHGV-0109713_42	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0109713_42	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0109713_43	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0109713_44	PHROG	phrog_5509	neck protein	connector
UHGV-0109713_44	eggNOG-mapper	936140.AEOT01000014_gene1361	NA	NA
UHGV-0109713_44	Structural annotation	TIGR01725, COG5005	NA	NA
UHGV-0109713_45	UniRef90	UniRef90_A0A316S919	Phage tail protein	NA
UHGV-0109713_45	eggNOG-mapper	1384484.AEQU_1175	NA	NA
UHGV-0109713_45	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-0109713_46	eggNOG-mapper	1121866.AUGK01000006_gene886	NA	NA
UHGV-0109713_47	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-0109713_47	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0109713_47	UniRef90	UniRef90_UPI0011074901	phage tail tape measure protein	NA
UHGV-0109713_47	eggNOG-mapper	397290.C810_00429	Phage-related minor tail protein	NA
UHGV-0109713_47	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0109713_47	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0109713_47	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0109713_48	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0109713_48	UniRef90	UniRef90_A0A1C5VG03	Phage-related protein	NA
UHGV-0109713_48	eggNOG-mapper	573061.Clocel_3532	tail component	NA
UHGV-0109713_48	COG	COG4722	Phage-related protein YomH	NA
UHGV-0109713_48	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0109713_49	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0109713_49	PHROG	phrog_7043	tail protein	tail
UHGV-0109713_49	UniRef90	UniRef90_UPI0011CA3AC4	SH3 domain-containing protein	NA
UHGV-0109713_49	eggNOG-mapper	1292035.H476_1004	Prophage endopeptidase tail	NA
UHGV-0109713_49	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0109713_49	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0109713_49	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0109713_49	COG	COG4926	Phage-related protein	NA
UHGV-0109713_49	Structural annotation	PF14594, PF08239, PF19081, PF13229, TIGR01665, NF040678, COG4926, COG4991, COG0791	NA	NA
UHGV-0109713_50	PHROG	phrog_16573	NA	unknown function
UHGV-0109713_50	UniRef90	UniRef90_R5XQW1	Putative lipase/acylhydrolase domain-containing protein	NA
UHGV-0109713_50	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0109713_52	PHROG	phrog_1193	hemolysin	other
UHGV-0109713_52	UniRef90	UniRef90_UPI0018AB0AA6	hemolysin XhlA family protein	NA
UHGV-0109713_52	eggNOG-mapper	445335.CBN_3060	Haemolysin XhlA	NA
UHGV-0109713_52	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0109713_53	UniRef90	UniRef90_UPI000983D253	phage holin	NA
UHGV-0109713_53	eggNOG-mapper	272626.lin1702	Bacteriophage holin	NA
UHGV-0109713_53	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0109713_53	COG	COG5546	NA	NA
UHGV-0109713_54	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0109713_54	PHROG	phrog_3088	amidase	lysis
UHGV-0109713_54	UniRef90	UniRef90_A0A1C5YVD6	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0109713_54	eggNOG-mapper	445973.CLOBAR_01731	Ami_3	NA
UHGV-0109713_54	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0109713_54	Pfam	PF19087	NA	DUF5776
UHGV-0109713_54	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0109713_54	Structural annotation	PF01510, PF18342, NF008758, NF033202, COG5632	NA	NA
UHGV-0109713_55	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0109713_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0109713_55	UniRef90	UniRef90_W1UDF0	Tyrosine recombinase XerC (Fragment)	NA
UHGV-0109713_55	eggNOG-mapper	632245.CLP_2897	Belongs to the 'phage' integrase family	NA
UHGV-0109713_55	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0109713_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0109713_55	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0109713_55	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA