UHGV-0109724

Genome information

Genome length 43,074 bps

CDS count 62

Completeness 89.42% (medium-quality)

geNomad score 0.9547

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109724
vOTU ID	vOTU-021759
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_257833
BioSample	SAMEA3708833
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.42% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9547
Virus hallmark genes (geNomad)	18
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	32.06
Jumbo phage	No

Genome content
Genome length	43,074 bps
GC content	37.24%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	62
CDS density	91.95%
Average CDS length	643.40 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109724_1	KOfam	K14059	int; integrase	NA
UHGV-0109724_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0109724_1	UniRef90	UniRef90_UPI001897E1C8	site-specific integrase	NA
UHGV-0109724_1	eggNOG-mapper	693746.OBV_41260	Belongs to the 'phage' integrase family	NA
UHGV-0109724_1	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0109724_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0109724_1	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0109724_1	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0109724_2	PHROG	phrog_20233	NA	unknown function
UHGV-0109724_2	eggNOG-mapper	1203606.HMPREF1526_01932	NA	NA
UHGV-0109724_3	PHROG	phrog_87	metallo-protease	other
UHGV-0109724_3	UniRef90	UniRef90_A0A316RCR6	Peptidase_M78 domain-containing protein	NA
UHGV-0109724_3	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-0109724_3	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0109724_3	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0109724_3	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0109724_4	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0109724_4	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0109724_4	UniRef90	UniRef90_R5R078	HTH cro/C1-type domain-containing protein	NA
UHGV-0109724_4	eggNOG-mapper	536233.CLO_1401	transcriptional regulator	NA
UHGV-0109724_4	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0109724_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109724_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109724_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0109724_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0109724_5	UniRef90	UniRef90_UPI0018E38DB7	helix-turn-helix domain-containing protein	NA
UHGV-0109724_5	eggNOG-mapper	997350.HMPREF9129_1691	PFAM Helix-turn-helix	NA
UHGV-0109724_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109724_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109724_8	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0109724_8	eggNOG-mapper	1235800.C819_00515	NA	NA
UHGV-0109724_8	Structural annotation	PF21578, NF041486	NA	NA
UHGV-0109724_9	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0109724_9	eggNOG-mapper	903814.ELI_3133	NA	NA
UHGV-0109724_11	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0109724_11	UniRef90	UniRef90_R6ISF1	NA	NA
UHGV-0109724_11	eggNOG-mapper	1029823.AFIE01000007_gene1906	NA	NA
UHGV-0109724_11	Pfam	PF06356	NA	DUF1064
UHGV-0109724_11	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0109724_12	PHROG	phrog_24518	NA	unknown function
UHGV-0109724_12	eggNOG-mapper	1519439.JPJG01000077_gene922	NA	NA
UHGV-0109724_13	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0109724_14	PHROG	phrog_8470	NA	unknown function
UHGV-0109724_14	UniRef90	UniRef90_A0A890FBA8	PcfJ domain-containing protein	NA
UHGV-0109724_14	eggNOG-mapper	1356854.N007_04730	PcfJ-like protein	NA
UHGV-0109724_14	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0109724_14	Structural annotation	PF14284	NA	NA
UHGV-0109724_15	PHROG	phrog_15609	NA	unknown function
UHGV-0109724_15	eggNOG-mapper	641112.ACOK01000073_gene2872	NA	NA
UHGV-0109724_15	Pfam	PF11300	NA	DUF3102
UHGV-0109724_15	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0109724_16	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0109724_16	PHROG	phrog_1	integrase	integration and excision
UHGV-0109724_16	UniRef90	UniRef90_A0A143XML8	Tyrosine recombinase XerD	NA
UHGV-0109724_16	eggNOG-mapper	883096.HMPREF9699_01296	Belongs to the 'phage' integrase family	NA
UHGV-0109724_16	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0109724_16	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0109724_16	Structural annotation	PF00589, PF13495, MF_02055, NF040815, COG4974	NA	NA
UHGV-0109724_17	KOfam	K03427	hsdM; type I restriction enzyme M protein [EC:2.1.1.72]	NA
UHGV-0109724_17	PHROG	phrog_5696	NA	unknown function
UHGV-0109724_17	UniRef90	UniRef90_A0A316QTS6	N6_Mtase domain-containing protein	NA
UHGV-0109724_17	eggNOG-mapper	948106.AWZT01000012_gene1459	N-6 DNA Methylase	NA
UHGV-0109724_17	Pfam	PF02384	N-6 DNA Methylase	N6_Mtase
UHGV-0109724_17	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0109724_18	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0109724_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0109724_18	UniRef90	UniRef90_A0A4P8IFI3	Integrase	NA
UHGV-0109724_18	eggNOG-mapper	696281.Desru_3585	Belongs to the 'phage' integrase family	NA
UHGV-0109724_18	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0109724_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0109724_18	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0109724_18	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0109724_19	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109724_19	UniRef90	UniRef90_R6H304	AP2 domain-containing protein	NA
UHGV-0109724_19	eggNOG-mapper	632245.CLP_1610	NA	NA
UHGV-0109724_19	Structural annotation	PF17375	NA	NA
UHGV-0109724_25	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0109724_25	UniRef90	UniRef90_A0A7U9S1Q6	Sigma70_r4_2 domain-containing protein	NA
UHGV-0109724_25	eggNOG-mapper	478749.BRYFOR_07530	NA	NA
UHGV-0109724_25	Structural annotation	PF07374, MF_00245, TIGR02984, COG2739	NA	NA
UHGV-0109724_26	KOfam	K04078	groES, HSPE1; chaperonin GroES	NA
UHGV-0109724_26	PHROG	phrog_3188	co-chaperonin GroES	other
UHGV-0109724_26	UniRef90	UniRef90_UPI000C06CB4D	co-chaperone GroES	NA
UHGV-0109724_26	eggNOG-mapper	760011.Spico_0631	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter	NA
UHGV-0109724_26	Pfam	PF00166	Chaperonin 10 Kd subunit	Cpn10
UHGV-0109724_26	COG	COG0234	Co-chaperonin GroES (HSP10)	NA
UHGV-0109724_26	Structural annotation	PF00166, MF_00580, NF001531, COG0234	NA	NA
UHGV-0109724_29	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0109724_29	UniRef90	UniRef90_E5VKE3	SLIT-ROBO Rho GTPase-activating protein 3	NA
UHGV-0109724_29	eggNOG-mapper	1235835.C814_01177	NA	NA
UHGV-0109724_29	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-0109724_29	Structural annotation	PF07471, TIGR01764, COG4220	NA	NA
UHGV-0109724_30	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0109724_30	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0109724_30	UniRef90	UniRef90_A0A3D5LV46	Terminase	NA
UHGV-0109724_30	eggNOG-mapper	138119.DSY2184	Phage terminase large subunit (GpA)	NA
UHGV-0109724_30	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0109724_30	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0109724_30	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0109724_30	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0109724_30	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0109724_31	PHROG	phrog_118	head-tail adaptor	connector
UHGV-0109724_31	UniRef90	UniRef90_A0A316SI17	Peptidylprolyl isomerase	NA
UHGV-0109724_31	eggNOG-mapper	411470.RUMGNA_00226	NA	NA
UHGV-0109724_31	Structural annotation	PF19645	NA	NA
UHGV-0109724_32	PHROG	phrog_21	portal protein	head and packaging
UHGV-0109724_32	UniRef90	UniRef90_E5VKE0	Lambda family phage portal protein	NA
UHGV-0109724_32	eggNOG-mapper	887325.HMPREF0381_0384	Phage portal protein, lambda family	NA
UHGV-0109724_32	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0109724_32	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0109724_32	COG	COG5511	Phage capsid protein	NA
UHGV-0109724_32	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0109724_33	KOfam	K06904	NA	NA
UHGV-0109724_33	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0109724_33	UniRef90	UniRef90_UPI0005509110	HK97 family phage prohead protease	NA
UHGV-0109724_33	eggNOG-mapper	1211817.CCAT010000013_gene3185	Caudovirus prohead serine protease	NA
UHGV-0109724_33	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0109724_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0109724_33	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0109724_34	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0109724_34	UniRef90	UniRef90_A0A413BFL7	Mu-like_gpT domain-containing protein	NA
UHGV-0109724_34	eggNOG-mapper	887325.HMPREF0381_0386	serine-type endopeptidase activity	NA
UHGV-0109724_34	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0109724_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0109724_34	Structural annotation	COG4397	NA	NA
UHGV-0109724_35	PHROG	phrog_122	head decoration	head and packaging
UHGV-0109724_35	UniRef90	UniRef90_A0A2A7AQS9	DNA breaking-rejoining protein	NA
UHGV-0109724_35	eggNOG-mapper	887325.HMPREF0381_0387	NA	NA
UHGV-0109724_35	Pfam	PF09956	NA	DUF2190
UHGV-0109724_35	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0109724_36	PHROG	phrog_34087	NA	unknown function
UHGV-0109724_36	eggNOG-mapper	887325.HMPREF0381_0388	NA	NA
UHGV-0109724_37	PHROG	phrog_2551	minor tail protein	tail
UHGV-0109724_37	eggNOG-mapper	411470.RUMGNA_00232	ATP-binding sugar transporter from pro-phage	NA
UHGV-0109724_37	Structural annotation	PF13856	NA	NA
UHGV-0109724_38	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0109724_38	UniRef90	UniRef90_UPI001C3BDE3A	Phage tail protein	NA
UHGV-0109724_38	eggNOG-mapper	478749.BRYFOR_07541	NA	NA
UHGV-0109724_38	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0109724_38	Structural annotation	PF06763	NA	NA
UHGV-0109724_39	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0109724_39	eggNOG-mapper	97139.C824_03375	NA	NA
UHGV-0109724_39	Structural annotation	PF08873	NA	NA
UHGV-0109724_40	KOfam	K06907	NA	NA
UHGV-0109724_40	PHROG	phrog_23	tail sheath	tail
UHGV-0109724_40	UniRef90	UniRef90_A0A173WPQ5	Phage tail sheath protein	NA
UHGV-0109724_40	eggNOG-mapper	887325.HMPREF0381_0393	COG3497 Phage tail sheath protein FI	NA
UHGV-0109724_40	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0109724_40	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0109724_41	KOfam	K06908	NA	NA
UHGV-0109724_41	PHROG	phrog_55	head closure	connector
UHGV-0109724_41	UniRef90	UniRef90_E6LKA9	Putative phage major tail tube protein	NA
UHGV-0109724_41	eggNOG-mapper	887325.HMPREF0381_0394	Phage tail tube protein FII	NA
UHGV-0109724_41	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0109724_41	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0109724_41	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0109724_42	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0109724_42	UniRef90	UniRef90_UPI0013794F6E	phage tail assembly protein	NA
UHGV-0109724_42	eggNOG-mapper	693746.OBV_22800	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0109724_42	Structural annotation	PF10109	NA	NA
UHGV-0109724_43	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0109724_43	UniRef90	UniRef90_A0A1M7SMG0	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0109724_43	eggNOG-mapper	478749.BRYFOR_07547	Phage tail tape measure protein, TP901 family	NA
UHGV-0109724_43	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0109724_43	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0109724_43	COG	COG5283	Phage-related tail protein	NA
UHGV-0109724_43	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0109724_44	UniRef90	UniRef90_A0A7X5D9R3	Phage tail protein	NA
UHGV-0109724_44	eggNOG-mapper	411463.EUBVEN_00435	Phage Tail Protein X	NA
UHGV-0109724_44	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0109724_44	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0109724_45	KOfam	K06905	NA	NA
UHGV-0109724_45	PHROG	phrog_52	tail protein	tail
UHGV-0109724_45	UniRef90	UniRef90_UPI001EE59FE1	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-0109724_45	eggNOG-mapper	411470.RUMGNA_00242	COG3500 Phage protein D	NA
UHGV-0109724_45	COG	COG3500	NA	NA
UHGV-0109724_45	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0109724_46	UniRef90	UniRef90_A0A3P6JP86	Phage baseplate assembly protein V	NA
UHGV-0109724_46	eggNOG-mapper	411470.RUMGNA_00243	Baseplate assembly protein	NA
UHGV-0109724_46	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0109724_47	PHROG	phrog_76	tail protein	tail
UHGV-0109724_47	UniRef90	UniRef90_A0A6L9HIG7	Phage tail protein	NA
UHGV-0109724_47	eggNOG-mapper	693746.OBV_22760	Phage P2 GpU	NA
UHGV-0109724_47	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0109724_47	COG	COG3499	NA	NA
UHGV-0109724_47	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0109724_48	UniRef90	UniRef90_UPI0018CF747C	GPW/gp25 family protein	NA
UHGV-0109724_48	eggNOG-mapper	1501230.ET33_26370	GPW Gp25 family protein	NA
UHGV-0109724_48	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0109724_49	PHROG	phrog_6	baseplate protein	tail
UHGV-0109724_49	UniRef90	UniRef90_UPI00156E2580	baseplate J/gp47 family protein	NA
UHGV-0109724_49	eggNOG-mapper	411470.RUMGNA_00246	NA	NA
UHGV-0109724_49	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0109724_49	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0109724_49	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0109724_50	PHROG	phrog_14404	baseplate protein	tail
UHGV-0109724_50	UniRef90	UniRef90_UPI00143A9FBF	phage tail protein I	NA
UHGV-0109724_50	eggNOG-mapper	478749.BRYFOR_07554	Phage tail protein (Tail_P2_I)	NA
UHGV-0109724_50	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0109724_50	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0109724_50	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0109724_50	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0109724_51	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0109724_51	eggNOG-mapper	1122172.KB890259_gene1398	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-0109724_51	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0109724_51	Structural annotation	PF12571, PF08931	NA	NA
UHGV-0109724_53	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0109724_54	PHROG	phrog_4105	NA	unknown function
UHGV-0109724_54	eggNOG-mapper	397288.C806_00115	NA	NA
UHGV-0109724_55	PHROG	phrog_18218	NA	unknown function
UHGV-0109724_55	eggNOG-mapper	1378168.N510_02472	NA	NA
UHGV-0109724_56	UniRef90	UniRef90_A0A3D4CAN7	SH3b domain-containing protein	NA
UHGV-0109724_56	eggNOG-mapper	717606.PaecuDRAFT_1762	Papain-like cysteine protease AvrRpt2	NA
UHGV-0109724_56	Pfam	PF13529	Peptidase_C39 like family	Peptidase_C39_2
UHGV-0109724_56	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0109724_56	COG	COG0768	Cell division protein FtsI, peptidoglycan transpeptidase (Penicillin-binding protein 2)	NA
UHGV-0109724_56	Structural annotation	PF03412, PF08239, NF040678, COG3807, COG3271	NA	NA
UHGV-0109724_57	PHROG	phrog_10678	NA	unknown function
UHGV-0109724_58	eggNOG-mapper	411459.RUMOBE_01706	NA	NA
UHGV-0109724_58	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109724_60	PHROG	phrog_297	holin	lysis
UHGV-0109724_60	UniRef90	UniRef90_A0A355L4A9	Peptidase C51 domain-containing protein	NA
UHGV-0109724_60	eggNOG-mapper	1179226.AJXO01000046_gene2104	CHAP domain	NA
UHGV-0109724_60	Pfam	PF05257	CHAP domain	CHAP
UHGV-0109724_60	COG	COG1388	LysM repeat	NA
UHGV-0109724_60	Structural annotation	PF06940, TIGR02594, COG3942	NA	NA
UHGV-0109724_62	PHROG	phrog_1863	NA	unknown function
UHGV-0109724_62	eggNOG-mapper	1203606.HMPREF1526_02027	NA	NA