UHGV-0109752

Genome information

Genome length 35,890 bps

CDS count 51

Completeness 92.65% (high-quality)

geNomad score 0.9763

Prediction confidence Confident

Genome information
Genome ID	UHGV-0109752
vOTU ID	vOTU-008158
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_250554
BioSample	SAMEA3708899
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	92.65% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	17
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9763
Virus hallmark genes (geNomad)	9
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	20.19
Jumbo phage	No

Genome content
Genome length	35,890 bps
GC content	37.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	51
CDS density	93.29%
Average CDS length	660.53 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0109752_1	KOfam	K06334	cotJC; spore coat protein JC	NA
UHGV-0109752_1	eggNOG-mapper	515620.EUBELI_00515	NA	NA
UHGV-0109752_1	COG	COG3546	Mn-containing catalase (includes spore coat protein CotJC)	NA
UHGV-0109752_3	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0109752_3	PHROG	phrog_95	integrase	integration and excision
UHGV-0109752_3	UniRef90	UniRef90_A0A413YU13	Recombinase family protein	NA
UHGV-0109752_3	eggNOG-mapper	411462.DORLON_00823	Resolvase, N terminal domain	NA
UHGV-0109752_3	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0109752_3	Pfam	PF07508	Recombinase	Recombinase
UHGV-0109752_3	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0109752_3	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0109752_3	Structural annotation	PF00239, PF07508, PF13408, NF041201, COG1961	NA	NA
UHGV-0109752_4	eggNOG-mapper	1378168.N510_03179	SWIM zinc finger	NA
UHGV-0109752_4	Pfam	PF04434	SWIM zinc finger	SWIM
UHGV-0109752_5	PHROG	phrog_87	metallo-protease	other
UHGV-0109752_5	UniRef90	UniRef90_A0A3R6AQ03	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0109752_5	eggNOG-mapper	397288.C806_00132	Zn peptidase	NA
UHGV-0109752_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0109752_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0109752_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0109752_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0109752_6	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0109752_6	UniRef90	UniRef90_UPI00189C4EFE	helix-turn-helix transcriptional regulator	NA
UHGV-0109752_6	eggNOG-mapper	1298920.KI911353_gene526	Helix-turn-helix XRE-family like proteins	NA
UHGV-0109752_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0109752_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0109752_6	Structural annotation	PF01381, MF_02017, NF007257, COG1396	NA	NA
UHGV-0109752_7	UniRef90	UniRef90_UPI000E52936A	helix-turn-helix domain-containing protein	NA
UHGV-0109752_7	eggNOG-mapper	887929.HMP0721_1290	Helix-turn-helix domain of resolvase	NA
UHGV-0109752_7	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-0109752_10	Structural annotation	NF037954	NA	NA
UHGV-0109752_15	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0109752_15	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0109752_15	eggNOG-mapper	742741.HMPREF9475_00404	NA	NA
UHGV-0109752_15	Structural annotation	PF21578	NA	NA
UHGV-0109752_16	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0109752_16	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0109752_16	UniRef90	UniRef90_A0A413YU26	RNase H type-1 domain-containing protein	NA
UHGV-0109752_16	eggNOG-mapper	411902.CLOBOL_05701	RNase H	NA
UHGV-0109752_16	Pfam	PF00075	RNase H	RNase_H
UHGV-0109752_16	COG	COG0328	Ribonuclease HI	NA
UHGV-0109752_16	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0109752_17	Structural annotation	PF02179, NF011863	NA	NA
UHGV-0109752_18	PHROG	phrog_7566	NA	unknown function
UHGV-0109752_18	eggNOG-mapper	1235800.C819_00511	NA	NA
UHGV-0109752_20	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0109752_20	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0109752_20	UniRef90	UniRef90_A0A356C6C6	DNA methylase N-4	NA
UHGV-0109752_20	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0109752_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0109752_20	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0109752_20	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0109752_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0109752_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0109752_21	UniRef90	UniRef90_A0A356C6K5	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0109752_21	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-0109752_21	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-0109752_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0109752_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0109752_21	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0109752_24	UniRef90	UniRef90_UPI001D072F7E	NA	NA
UHGV-0109752_24	eggNOG-mapper	1235790.C805_00035	NA	NA
UHGV-0109752_25	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0109752_25	UniRef90	UniRef90_R5ZJF1	HNH endonuclease	NA
UHGV-0109752_25	eggNOG-mapper	610130.Closa_0730	HNH endonuclease	NA
UHGV-0109752_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0109752_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0109752_28	PHROG	phrog_625	NA	unknown function
UHGV-0109752_28	UniRef90	UniRef90_A0A413YU40	ASCH domain-containing protein	NA
UHGV-0109752_28	eggNOG-mapper	397290.C810_01502	NA	NA
UHGV-0109752_28	Structural annotation	PF12961, COG2028	NA	NA
UHGV-0109752_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0109752_29	UniRef90	UniRef90_UPI0009BB8B35	RNA polymerase subunit sigma-24	NA
UHGV-0109752_29	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0109752_29	Structural annotation	PF02996	NA	NA
UHGV-0109752_30	PHROG	phrog_2538	terminase small subunit	head and packaging
UHGV-0109752_30	UniRef90	UniRef90_A0A1C5UE81	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-0109752_30	eggNOG-mapper	320843.Q4ZBS0_9CAUD	DNA packaging	NA
UHGV-0109752_30	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-0109752_30	Structural annotation	PF13022	NA	NA
UHGV-0109752_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0109752_31	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0109752_31	UniRef90	UniRef90_A0A413YU24	Terminase	NA
UHGV-0109752_31	eggNOG-mapper	1391647.AVSV01000003_gene1802	Phage terminase, large subunit, PBSX family	NA
UHGV-0109752_31	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0109752_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-0109752_31	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0109752_32	PHROG	phrog_533	portal protein	head and packaging
UHGV-0109752_32	UniRef90	UniRef90_A0A413YU90	Phage portal protein	NA
UHGV-0109752_32	eggNOG-mapper	33035.JPJF01000093_gene2257	NA	NA
UHGV-0109752_32	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0109752_33	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0109752_33	UniRef90	UniRef90_A0A3D5LQU4	Minor capsid protein	NA
UHGV-0109752_33	eggNOG-mapper	742740.HMPREF9474_03503	Phage minor capsid protein 2	NA
UHGV-0109752_33	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0109752_33	COG	COG2369	NA	NA
UHGV-0109752_33	Structural annotation	PF06152	NA	NA
UHGV-0109752_35	PHROG	phrog_872	NA	unknown function
UHGV-0109752_35	eggNOG-mapper	397290.C810_05225	NA	NA
UHGV-0109752_35	dbAPIS	APIS052	NA	NA
UHGV-0109752_36	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0109752_36	eggNOG-mapper	1304866.K413DRAFT_0806	NA	NA
UHGV-0109752_37	PHROG	phrog_422	major head protein	head and packaging
UHGV-0109752_37	UniRef90	UniRef90_W0U896	Phage major capsid protein	NA
UHGV-0109752_37	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-0109752_37	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0109752_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0109752_39	eggNOG-mapper	1304866.K413DRAFT_0783	NA	NA
UHGV-0109752_40	PHROG	phrog_8710	NA	unknown function
UHGV-0109752_40	eggNOG-mapper	742740.HMPREF9474_03508	NA	NA
UHGV-0109752_40	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0109752_41	eggNOG-mapper	742740.HMPREF9474_03509	NA	NA
UHGV-0109752_42	PHROG	phrog_2595	head-tail connector protein	connector
UHGV-0109752_42	UniRef90	UniRef90_UPI001D068DAC	minor capsid protein	NA
UHGV-0109752_42	eggNOG-mapper	742740.HMPREF9474_03510	NA	NA
UHGV-0109752_42	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0109752_42	Structural annotation	PF12691, COG5003	NA	NA
UHGV-0109752_43	PHROG	phrog_820	major tail protein	tail
UHGV-0109752_43	UniRef90	UniRef90_T3DDR1	Phage major tail 2 family protein	NA
UHGV-0109752_43	eggNOG-mapper	1151292.QEW_2426	NA	NA
UHGV-0109752_43	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0109752_44	PHROG	phrog_8300	NA	unknown function
UHGV-0109752_44	eggNOG-mapper	1151292.QEW_2425	NA	NA
UHGV-0109752_44	Structural annotation	PF06896	NA	NA
UHGV-0109752_45	PHROG	phrog_8355	NA	unknown function
UHGV-0109752_45	UniRef90	UniRef90_UPI0006BBA9AA	Gp15 family bacteriophage protein	NA
UHGV-0109752_45	eggNOG-mapper	1151292.QEW_2424	NA	NA
UHGV-0109752_46	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0109752_46	UniRef90	UniRef90_R6TDK7	Phage-related protein-like protein	NA
UHGV-0109752_46	eggNOG-mapper	33035.JPJF01000093_gene2243	phage tail tape measure protein	NA
UHGV-0109752_46	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0109752_46	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0109752_47	PHROG	phrog_1194	NA	unknown function
UHGV-0109752_47	eggNOG-mapper	33035.JPJF01000093_gene2242	NA	NA
UHGV-0109752_47	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0109752_48	PHROG	phrog_1401	NA	unknown function
UHGV-0109752_48	UniRef90	UniRef90_UPI00129D2DCF	NA	NA
UHGV-0109752_48	eggNOG-mapper	1294142.CINTURNW_1705	NA	NA
UHGV-0109752_48	Structural annotation	PF07761	NA	NA
UHGV-0109752_49	PHROG	phrog_6616	tail protein	tail
UHGV-0109752_49	UniRef90	UniRef90_A0A356C4L7	Peptidase S74 domain-containing protein	NA
UHGV-0109752_49	eggNOG-mapper	1294142.CINTURNW_1706	Phage minor structural protein	NA
UHGV-0109752_49	COG	COG4926	Phage-related protein	NA
UHGV-0109752_49	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0109752_51	PHROG	phrog_199	holin	lysis
UHGV-0109752_51	UniRef90	UniRef90_A0A3B8UJ75	Holin	NA
UHGV-0109752_51	eggNOG-mapper	483218.BACPEC_01140	Bacteriophage holin family	NA
UHGV-0109752_51	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0109752_51	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0109752_51	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0109752_51	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA