UHGV-0110047

Genome information

Genome length 44,378 bps

CDS count 79

Completeness 100.00% (complete)

geNomad score 0.9825

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110047
vOTU ID	vOTU-002852
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253867
BioSample	SAMEA3708791
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	11
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9825
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	14.77
Jumbo phage	No

Genome content
Genome length	44,378 bps
GC content	52.26%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	89.99%
Average CDS length	510.15 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110047_1	UniRef90	UniRef90_A0A7M1RTM1	RNA polymerase sigma factor/ubiquitin-like protein	NA
UHGV-0110047_1	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-0110047_4	KOfam	K19167	abiQ; protein AbiQ	NA
UHGV-0110047_4	PHROG	phrog_9764	NA	unknown function
UHGV-0110047_4	UniRef90	UniRef90_A0A845R8D8	Type III toxin-antitoxin system ToxN/AbiQ family toxin	NA
UHGV-0110047_4	eggNOG-mapper	1519439.JPJG01000060_gene1906	Toxin ToxN, type III toxin-antitoxin system	NA
UHGV-0110047_4	PADLOC	AbiQ	AbiQ	Abi
UHGV-0110047_4	Pfam	PF13958	Toxin ToxN, type III toxin-antitoxin system	ToxN_toxin
UHGV-0110047_4	Structural annotation	PF13958	NA	NA
UHGV-0110047_5	UniRef90	UniRef90_A0A1C6JAI6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0110047_5	Structural annotation	PF16509, MF_00245, NF001066, COG2739	NA	NA
UHGV-0110047_6	KOfam	K11062	entD; probable enterotoxin D	NA
UHGV-0110047_6	PHROG	phrog_1794	amidase	lysis
UHGV-0110047_6	UniRef90	UniRef90_A0A3D4VSU2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0110047_6	eggNOG-mapper	397290.C810_00440	Ami_2	NA
UHGV-0110047_6	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0110047_6	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0110047_6	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0110047_7	PHROG	phrog_13256	NA	unknown function
UHGV-0110047_7	eggNOG-mapper	1226322.HMPREF1545_00166	NA	NA
UHGV-0110047_10	PHROG	phrog_937	hemolysin	other
UHGV-0110047_10	eggNOG-mapper	1519439.JPJG01000023_gene533	NA	NA
UHGV-0110047_11	KOfam	K03651	cpdA; 3',5'-cyclic-AMP phosphodiesterase [EC:3.1.4.53]	NA
UHGV-0110047_11	PHROG	phrog_7158	NA	unknown function
UHGV-0110047_11	UniRef90	UniRef90_A0A1E8F0N5	3',5'-cyclic adenosine monophosphate phosphodiesterase CpdA	NA
UHGV-0110047_11	eggNOG-mapper	411462.DORLON_00771	NA	NA
UHGV-0110047_11	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0110047_11	Structural annotation	PF02368, PF09423, MF_00575, NF003743, NF005261, COG5492	NA	NA
UHGV-0110047_12	PHROG	phrog_19976	tail assembly protein	tail
UHGV-0110047_12	eggNOG-mapper	877414.ATWA01000062_gene1616	NA	NA
UHGV-0110047_12	Structural annotation	PF10651, NF033814	NA	NA
UHGV-0110047_15	PHROG	phrog_32308	NA	unknown function
UHGV-0110047_15	eggNOG-mapper	1122918.KB907248_gene4487	NA	NA
UHGV-0110047_15	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0110047_16	PHROG	phrog_1194	NA	unknown function
UHGV-0110047_16	eggNOG-mapper	1121333.JMLH01000047_gene1008	NA	NA
UHGV-0110047_16	Pfam	PF20458	NA	DUF6711
UHGV-0110047_16	Structural annotation	PF20458, TIGR02126, COG5437	NA	NA
UHGV-0110047_17	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0110047_17	UniRef90	UniRef90_A0A173WM72	Phage-related protein	NA
UHGV-0110047_17	eggNOG-mapper	1123263.AUKY01000015_gene1620	Phage tail tape measure protein TP901	NA
UHGV-0110047_17	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0110047_18	eggNOG-mapper	1121333.JMLH01000047_gene1011	NA	NA
UHGV-0110047_19	UniRef90	UniRef90_UPI001D0975F6	NA	NA
UHGV-0110047_20	eggNOG-mapper	1298920.KI911353_gene2652	NA	NA
UHGV-0110047_20	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0110047_21	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0110047_22	eggNOG-mapper	476272.RUMHYD_01963	NA	NA
UHGV-0110047_23	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0110047_24	UniRef90	UniRef90_A0A1V5X694	Phage gp6-like head-tail connector protein	NA
UHGV-0110047_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0110047_24	Structural annotation	TIGR01560	NA	NA
UHGV-0110047_25	PHROG	phrog_544	major head protein	head and packaging
UHGV-0110047_25	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-0110047_25	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0110047_28	PHROG	phrog_6577	NA	unknown function
UHGV-0110047_28	UniRef90	UniRef90_A0A3D3Y4T2	Phage_Mu_F domain-containing protein	NA
UHGV-0110047_28	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0110047_28	COG	COG2369	NA	NA
UHGV-0110047_28	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0110047_29	PHROG	phrog_64	portal protein	head and packaging
UHGV-0110047_29	UniRef90	UniRef90_A0A3D3Y472	Phage portal protein	NA
UHGV-0110047_29	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0110047_29	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0110047_29	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0110047_30	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0110047_30	UniRef90	UniRef90_UPI000419A6BC	phage terminase large subunit	NA
UHGV-0110047_30	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0110047_30	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0110047_30	COG	COG5410	NA	NA
UHGV-0110047_30	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0110047_31	UniRef90	UniRef90_A0A318EMC2	DNA-packaging protein gp3	NA
UHGV-0110047_31	eggNOG-mapper	877421.AUJT01000054_gene66	NA	NA
UHGV-0110047_31	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0110047_32	PHROG	phrog_33872	NA	unknown function
UHGV-0110047_33	Structural annotation	PF10723	NA	NA
UHGV-0110047_36	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-0110047_36	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-0110047_36	UniRef90	UniRef90_A0A3D3Y6X7	FtsK domain-containing protein	NA
UHGV-0110047_36	eggNOG-mapper	1121445.ATUZ01000013_gene1292	PFAM cell divisionFtsK SpoIIIE	NA
UHGV-0110047_36	PADLOC	SspH_00004	SspH	SSP
UHGV-0110047_36	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-0110047_36	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-0110047_36	Structural annotation	PF01580, MF_00350, TIGR03925, COG4128	NA	NA
UHGV-0110047_38	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0110047_38	eggNOG-mapper	536233.CLO_1822	NA	NA
UHGV-0110047_38	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0110047_39	Pfam	PF13384	Homeodomain-like domain	HTH_23
UHGV-0110047_40	UniRef90	UniRef90_K1SN71	HTH_30 domain-containing protein	NA
UHGV-0110047_40	COG	COG3835	Sugar diacid utilization regulator CdaR	NA
UHGV-0110047_41	Structural annotation	PF10013	NA	NA
UHGV-0110047_42	UniRef90	UniRef90_UPI001A9B9FB4	FAD-dependent thymidylate synthase	NA
UHGV-0110047_42	eggNOG-mapper	742735.HMPREF9467_00909	NA	NA
UHGV-0110047_42	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0110047_42	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0110047_43	PHROG	phrog_31336	NA	unknown function
UHGV-0110047_43	UniRef90	UniRef90_A0A5C7LKL9	NA	NA
UHGV-0110047_43	eggNOG-mapper	1357732.A0A059PYA6_9CAUD	NA	NA
UHGV-0110047_43	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0110047_43	Structural annotation	PF18909	NA	NA
UHGV-0110047_44	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0110047_44	PHROG	phrog_67	DNA methyltransferase	other
UHGV-0110047_44	UniRef90	UniRef90_A0A2U1CFM2	Methyltransferase	NA
UHGV-0110047_44	eggNOG-mapper	411468.CLOSCI_00299	DNA methylase	NA
UHGV-0110047_44	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0110047_44	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0110047_44	COG	COG0863	DNA modification methylase	NA
UHGV-0110047_44	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0110047_46	UniRef90	UniRef90_UPI001C10265C	NA	NA
UHGV-0110047_46	Pfam	PF04448	NA	DUF551
UHGV-0110047_46	Structural annotation	NF041588	NA	NA
UHGV-0110047_53	PHROG	phrog_38832	NA	unknown function
UHGV-0110047_53	eggNOG-mapper	665956.HMPREF1032_03087	NA	NA
UHGV-0110047_54	PHROG	phrog_3136	NA	unknown function
UHGV-0110047_54	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0110047_54	eggNOG-mapper	642492.Clole_1416	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-0110047_54	Pfam	PF04266	ASCH domain	ASCH
UHGV-0110047_54	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0110047_54	Structural annotation	PF12961, NF002008, COG4933	NA	NA
UHGV-0110047_56	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0110047_56	UniRef90	UniRef90_A0A841L4D7	Radical SAM superfamily enzyme YgiQ (UPF0313 family)	NA
UHGV-0110047_56	eggNOG-mapper	742817.HMPREF9449_01796	radical SAM domain protein	NA
UHGV-0110047_56	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0110047_56	Structural annotation	PF04055, MF_01864, TIGR04072, COG0621	NA	NA
UHGV-0110047_59	Structural annotation	PF05082	NA	NA
UHGV-0110047_61	UniRef90	UniRef90_A0A098GES5	Putative phage associated protein	NA
UHGV-0110047_61	Structural annotation	PF01423, MF_00257, NF001963, COG1958	NA	NA
UHGV-0110047_64	eggNOG-mapper	693746.OBV_43260	NA	NA
UHGV-0110047_64	Structural annotation	PF09035, NF040990	NA	NA
UHGV-0110047_66	PHROG	phrog_5810	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0110047_66	UniRef90	UniRef90_R6LWZ9	DnaD and phage-associated domain	NA
UHGV-0110047_66	eggNOG-mapper	742740.HMPREF9474_03117	NA	NA
UHGV-0110047_66	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0110047_67	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0110047_67	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0110047_67	UniRef90	UniRef90_R6LLA3	Single-stranded DNA-binding protein	NA
UHGV-0110047_67	eggNOG-mapper	693746.OBV_19910	Single-strand binding protein family	NA
UHGV-0110047_67	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0110047_67	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0110047_67	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0110047_67	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0110047_67	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0110047_69	UniRef90	UniRef90_A0A3D1LDS4	HNH domain-containing protein	NA
UHGV-0110047_69	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-0110047_69	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0110047_70	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0110047_70	UniRef90	UniRef90_UPI001F3F3E5C	recombination protein NinB	NA
UHGV-0110047_70	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0110047_70	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0110047_71	PHROG	phrog_14970	NA	unknown function
UHGV-0110047_71	UniRef90	UniRef90_UPI00123F00F5	Rad52/Rad22 family DNA repair protein	NA
UHGV-0110047_71	eggNOG-mapper	397291.C804_03856	double-strand break repair protein	NA
UHGV-0110047_71	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0110047_71	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0110047_71	Structural annotation	PF04098, TIGR00607, COG4712	NA	NA
UHGV-0110047_72	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0110047_72	UniRef90	UniRef90_A0A0R1VMU2	Pathogenesis-related transcriptional factor and ERF protein	NA
UHGV-0110047_72	eggNOG-mapper	756499.Desde_1078	NA	NA
UHGV-0110047_72	Structural annotation	PF17375	NA	NA
UHGV-0110047_75	PHROG	phrog_4973	NA	unknown function
UHGV-0110047_75	UniRef90	UniRef90_UPI001D0904CC	helix-turn-helix domain-containing protein	NA
UHGV-0110047_75	eggNOG-mapper	584708.Apau_1668	Helix-turn-helix domain	NA
UHGV-0110047_75	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0110047_75	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0110047_76	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0110047_76	Structural annotation	NF007257, COG1396	NA	NA
UHGV-0110047_77	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0110047_77	PHROG	phrog_19856	NA	unknown function
UHGV-0110047_77	UniRef90	UniRef90_S0JAU4	Mrr_cat domain-containing protein	NA
UHGV-0110047_77	eggNOG-mapper	689781.AUJX01000015_gene1540	restriction endonuclease	NA
UHGV-0110047_77	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0110047_77	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0110047_77	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0110047_77	Structural annotation	PF04471, PF09397, NF003162, COG1787	NA	NA
UHGV-0110047_78	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0110047_79	KOfam	K14059	int; integrase	NA
UHGV-0110047_79	PHROG	phrog_1	integrase	integration and excision
UHGV-0110047_79	UniRef90	UniRef90_UPI00195CC1EE	tyrosine-type recombinase/integrase	NA
UHGV-0110047_79	eggNOG-mapper	1235835.C814_03141	Belongs to the 'phage' integrase family	NA
UHGV-0110047_79	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0110047_79	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0110047_79	Structural annotation	PF00589, MF_01807, TIGR02224, COG4973	NA	NA