UHGV-0110072

Genome information

Genome length 47,236 bps

CDS count 79

Completeness 99.90% (high-quality)

geNomad score 0.9776

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110072
vOTU ID	vOTU-063464
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_250510
BioSample	SAMEA3708880
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.90% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9776
Virus hallmark genes (geNomad)	4
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	19.91
Jumbo phage	No

Genome content
Genome length	47,236 bps
GC content	48.92%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	79
CDS density	86.88%
Average CDS length	520.33 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110072_1	UniRef90	UniRef90_UPI001896BBDB	MerR family transcriptional regulator	NA
UHGV-0110072_1	eggNOG-mapper	1033732.CAHI01000013_gene307	Helix-turn-helix domain	NA
UHGV-0110072_1	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0110072_1	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-0110072_1	Structural annotation	PF12728, MF_01155, NF033787, COG3311	NA	NA
UHGV-0110072_5	PHROG	phrog_8684	NA	unknown function
UHGV-0110072_5	UniRef90	UniRef90_UPI001CE271CB	YopX family protein	NA
UHGV-0110072_5	eggNOG-mapper	762968.HMPREF9441_00543	YopX protein	NA
UHGV-0110072_5	Pfam	PF09643	YopX protein	YopX
UHGV-0110072_5	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0110072_5	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0110072_10	PHROG	phrog_874	NA	unknown function
UHGV-0110072_10	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0110072_10	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0110072_12	eggNOG-mapper	742725.HMPREF9450_02087	NA	NA
UHGV-0110072_18	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0110072_18	PHROG	phrog_363	DNA methyltransferase	other
UHGV-0110072_18	UniRef90	UniRef90_UPI001B3341D6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0110072_18	eggNOG-mapper	445970.ALIPUT_00030	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0110072_18	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-0110072_18	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0110072_18	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0110072_18	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0110072_18	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0110072_19	KOfam	K21919	KCTD9; BTB/POZ domain-containing protein KCTD9	NA
UHGV-0110072_19	PHROG	phrog_9562	NA	unknown function
UHGV-0110072_19	UniRef90	UniRef90_UPI001D07F68D	pentapeptide repeat-containing protein	NA
UHGV-0110072_19	eggNOG-mapper	1226322.HMPREF1545_00011	Pentapeptide repeats (8 copies)	NA
UHGV-0110072_19	Pfam	PF00805	Pentapeptide repeats (8 copies)	Pentapeptide
UHGV-0110072_19	Pfam	PF13576	Pentapeptide repeats (9 copies)	Pentapeptide_3
UHGV-0110072_19	Pfam	PF19062	NA	DUF5758
UHGV-0110072_19	COG	COG1357	NA	NA
UHGV-0110072_19	Structural annotation	PF19062, PF13599, NF000139	NA	NA
UHGV-0110072_20	PHROG	phrog_1770	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0110072_20	eggNOG-mapper	202954.BBNK01000034_gene3798	NA	NA
UHGV-0110072_20	Structural annotation	PF02075, MF_00034, NF000711, COG2410	NA	NA
UHGV-0110072_21	PHROG	phrog_29547	NA	unknown function
UHGV-0110072_21	eggNOG-mapper	619693.HMPREF6745_2494	NA	NA
UHGV-0110072_21	Pfam	PF20338	NA	DUF6633
UHGV-0110072_21	Structural annotation	PF20338	NA	NA
UHGV-0110072_22	PHROG	phrog_23776	NA	unknown function
UHGV-0110072_22	UniRef90	UniRef90_B0MWU9	NA	NA
UHGV-0110072_22	eggNOG-mapper	445970.ALIPUT_01604	NA	NA
UHGV-0110072_22	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0110072_22	Structural annotation	PF01978, MF_01819, NF041230, COG3355	NA	NA
UHGV-0110072_23	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0110072_23	eggNOG-mapper	1127696.HMPREF9134_00465	NA	NA
UHGV-0110072_23	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0110072_24	eggNOG-mapper	1121100.JCM6294_521	NA	NA
UHGV-0110072_26	UniRef90	UniRef90_UPI001897694A	helix-turn-helix domain-containing protein	NA
UHGV-0110072_26	eggNOG-mapper	679935.Alfi_0472	Helix-turn-helix domain	NA
UHGV-0110072_26	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-0110072_26	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0110072_27	UniRef90	UniRef90_UPI0018977E4B	Rad52/Rad22 family DNA repair protein	NA
UHGV-0110072_27	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0110072_27	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0110072_27	Structural annotation	PF06420, TIGR00607, COG4712	NA	NA
UHGV-0110072_30	dbAPIS	APIS006	Trigger programmed cell death (PCD) by P4 prophage.	NA
UHGV-0110072_35	UniRef90	UniRef90_A0A7Z6S5K3	Class I SAM-dependent methyltransferase	NA
UHGV-0110072_35	Structural annotation	PF05891, MF_01813, TIGR00740, COG2226	NA	NA
UHGV-0110072_37	KOfam	K21138	HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase [EC:3.1.7.2]	NA
UHGV-0110072_37	PHROG	phrog_990	metal-dependent phosphohydrolase	other
UHGV-0110072_37	UniRef90	UniRef90_UPI000981FCC1	phosphohydrolase	NA
UHGV-0110072_37	eggNOG-mapper	679189.HMPREF9019_0954	phosphohydrolase	NA
UHGV-0110072_37	Pfam	PF13328	HD domain	HD_4
UHGV-0110072_37	COG	COG0317	(p)ppGpp synthase/hydrolase, HD superfamily	NA
UHGV-0110072_40	Pfam	PF14090	Helix-turn-helix domain	HTH_39
UHGV-0110072_40	Structural annotation	PF14090, NF040939, COG4738	NA	NA
UHGV-0110072_41	KOfam	K07684	narL; two-component system, NarL family, nitrate/nitrite response regulator NarL	NA
UHGV-0110072_41	UniRef90	UniRef90_A0A5B5VJJ0	Helix-turn-helix transcriptional regulator	NA
UHGV-0110072_41	eggNOG-mapper	1116472.MGMO_177c00100	helix_turn_helix, Lux Regulon	NA
UHGV-0110072_41	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0110072_41	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0110072_41	Structural annotation	PF00196, MF_00674, COG2771	NA	NA
UHGV-0110072_43	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0110072_43	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0110072_43	UniRef90	UniRef90_UPI001D0692D6	helix-turn-helix domain-containing protein	NA
UHGV-0110072_43	eggNOG-mapper	1122985.HMPREF1991_02233	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0110072_43	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0110072_43	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0110072_43	Structural annotation	PF01381, NF007257, COG1476	NA	NA
UHGV-0110072_44	UniRef90	UniRef90_A0A2M8TWF3	Transcriptional regulator	NA
UHGV-0110072_44	eggNOG-mapper	1122983.BAJY01000001_gene231	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0110072_44	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0110072_46	eggNOG-mapper	667015.Bacsa_3590	NA	NA
UHGV-0110072_46	Structural annotation	PF21748, COG1598	NA	NA
UHGV-0110072_47	UniRef90	UniRef90_A0A7L5EMW9	Type II toxin-antitoxin system HicA family toxin	NA
UHGV-0110072_47	eggNOG-mapper	1538644.KO02_16730	NA	NA
UHGV-0110072_48	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0110072_48	UniRef90	UniRef90_UPI0009D239E2	DNA packaging protein	NA
UHGV-0110072_48	eggNOG-mapper	1116369.KB890024_gene3033	DNA-packaging protein gp3	NA
UHGV-0110072_48	Pfam	PF16677	DNA-packaging protein gp3	GP3_package
UHGV-0110072_48	Structural annotation	PF16677	NA	NA
UHGV-0110072_49	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0110072_49	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0110072_49	UniRef90	UniRef90_A0A644VI13	Terminase_3 domain-containing protein	NA
UHGV-0110072_49	eggNOG-mapper	313596.RB2501_01375	Phage terminase large subunit	NA
UHGV-0110072_49	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0110072_49	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0110072_49	COG	COG1783	Phage terminase large subunit	NA
UHGV-0110072_49	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0110072_50	PHROG	phrog_12	portal protein	head and packaging
UHGV-0110072_50	UniRef90	UniRef90_A0A6J7X8G3	COG4695 Phage-related protein (Fragment)	NA
UHGV-0110072_50	eggNOG-mapper	449673.BACSTE_00582	Phage portal protein	NA
UHGV-0110072_50	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0110072_51	KOfam	K06904	NA	NA
UHGV-0110072_51	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0110072_51	eggNOG-mapper	435590.BVU_2834	Phage prohead protease, HK97 family	NA
UHGV-0110072_51	COG	COG3740	Phage head maturation protease	NA
UHGV-0110072_52	PHROG	phrog_10	major head protein	head and packaging
UHGV-0110072_52	UniRef90	UniRef90_A0A2V2FQN4	Phage major capsid protein	NA
UHGV-0110072_52	eggNOG-mapper	449673.BACSTE_00580	Phage capsid family	NA
UHGV-0110072_52	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0110072_52	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0110072_52	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0110072_52	Structural annotation	PF05065, MF_04113, TIGR01554, COG4653	NA	NA
UHGV-0110072_56	Structural annotation	PF05561	NA	NA
UHGV-0110072_59	PHROG	phrog_33698	NA	unknown function
UHGV-0110072_59	UniRef90	UniRef90_UPI001873A18B	BACON domain-containing protein	NA
UHGV-0110072_59	eggNOG-mapper	357276.EL88_08390	NA	NA
UHGV-0110072_59	Structural annotation	PF15006, NF041425, COG1470, COG4379	NA	NA
UHGV-0110072_60	PHROG	phrog_37298	NA	unknown function
UHGV-0110072_60	eggNOG-mapper	357276.EL88_08385	domain protein	NA
UHGV-0110072_60	COG	COG1511	NA	NA
UHGV-0110072_61	PHROG	phrog_21217	NA	unknown function
UHGV-0110072_67	PHROG	phrog_873	endolysin	head and packaging
UHGV-0110072_67	UniRef90	UniRef90_UPI0018ABA41D	structural protein P5	NA
UHGV-0110072_67	eggNOG-mapper	411477.PARMER_01682	NA	NA
UHGV-0110072_68	Structural annotation	PF20647	NA	NA
UHGV-0110072_69	eggNOG-mapper	445970.ALIPUT_01633	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0110072_69	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0110072_70	PHROG	phrog_16490	NA	unknown function
UHGV-0110072_70	UniRef90	UniRef90_A0A7M1RZU0	Spike protein/glycoprotein	NA
UHGV-0110072_70	eggNOG-mapper	742725.HMPREF9450_02105	NA	NA
UHGV-0110072_72	eggNOG-mapper	742725.HMPREF9450_02107	NA	NA
UHGV-0110072_72	Structural annotation	PF10781	NA	NA
UHGV-0110072_74	PHROG	phrog_38431	NA	unknown function
UHGV-0110072_74	UniRef90	UniRef90_F3QSP5	Conserved domain protein	NA
UHGV-0110072_74	eggNOG-mapper	445970.ALIPUT_01628	NA	NA
UHGV-0110072_76	UniRef90	UniRef90_F3QSP6	Conserved domain protein	NA
UHGV-0110072_76	eggNOG-mapper	742725.HMPREF9450_02112	NA	NA
UHGV-0110072_77	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0110072_77	PHROG	phrog_1	integrase	integration and excision
UHGV-0110072_77	UniRef90	UniRef90_UPI0018735313	site-specific integrase	NA
UHGV-0110072_77	eggNOG-mapper	1433126.BN938_1066	Belongs to the 'phage' integrase family	NA
UHGV-0110072_77	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0110072_77	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0110072_77	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0110072_77	Structural annotation	PF00589, MF_01808, NF002331, COG4974	NA	NA
UHGV-0110072_79	KOfam	K01176	AMY, amyA, malS; alpha-amylase [EC:3.2.1.1]	NA
UHGV-0110072_79	UniRef90	UniRef90_A0A641W9L9	Alpha-amylase (Fragment)	NA
UHGV-0110072_79	eggNOG-mapper	679935.Alfi_1768	Alpha amylase, catalytic domain	NA
UHGV-0110072_79	COG	COG0366	Glycosidase/amylase (phosphorylase)	NA