UHGV-0110119

Genome information

vOTU vOTU-041910

Genome length 24,933 bps

CDS count 40

Completeness 60.07% (medium-quality)

geNomad score 0.9832

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110119
vOTU ID	vOTU-041910
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_243948
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	60.07% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9832
Virus hallmark genes (geNomad)	10
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	40.49
Jumbo phage	No

Genome content
Genome length	24,933 bps
GC content	51.81%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	40
CDS density	94.07%
Average CDS length	590.40 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110119_2	Structural annotation	PF12510	NA	NA
UHGV-0110119_3	PHROG	phrog_20016	NA	unknown function
UHGV-0110119_3	UniRef90	UniRef90_A0A345BPX4	Carbohydrate binding domain/collagen triple helix repeat protein	NA
UHGV-0110119_3	eggNOG-mapper	1226322.HMPREF1545_00077	NA	NA
UHGV-0110119_3	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0110119_4	PHROG	phrog_16490	NA	unknown function
UHGV-0110119_4	eggNOG-mapper	658655.HMPREF0988_00917	NA	NA
UHGV-0110119_5	PHROG	phrog_22984	NA	unknown function
UHGV-0110119_6	PHROG	phrog_21718	NA	unknown function
UHGV-0110119_6	UniRef90	UniRef90_A0A285PT36	Consensus disorder prediction	NA
UHGV-0110119_7	PHROG	phrog_3754	NA	unknown function
UHGV-0110119_7	eggNOG-mapper	476272.RUMHYD_01764	NA	NA
UHGV-0110119_8	Structural annotation	PF01047, MF_00620, COG2771	NA	NA
UHGV-0110119_9	PHROG	phrog_10091	holin	lysis
UHGV-0110119_9	UniRef90	UniRef90_D7GNX3	Holin, phage phi LC3 family	NA
UHGV-0110119_9	eggNOG-mapper	97139.C824_05950	Bacteriophage holin	NA
UHGV-0110119_9	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0110119_9	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0110119_9	COG	COG5546	NA	NA
UHGV-0110119_9	Structural annotation	COG5546	NA	NA
UHGV-0110119_10	PHROG	phrog_918	NA	unknown function
UHGV-0110119_10	UniRef90	UniRef90_UPI00156D5D02	NA	NA
UHGV-0110119_10	eggNOG-mapper	411902.CLOBOL_05677	NA	NA
UHGV-0110119_10	Pfam	PF19791	NA	DUF6275
UHGV-0110119_10	Structural annotation	PF19791	NA	NA
UHGV-0110119_11	PHROG	phrog_937	hemolysin	other
UHGV-0110119_11	eggNOG-mapper	1007096.BAGW01000017_gene814	NA	NA
UHGV-0110119_12	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0110119_12	PHROG	phrog_894	endolysin	lysis
UHGV-0110119_12	UniRef90	UniRef90_R5EEQ7	Putative muramoyl-pentapeptide carboxypeptidase	NA
UHGV-0110119_12	eggNOG-mapper	931626.Awo_c26840	Peptidase M15	NA
UHGV-0110119_12	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0110119_12	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0110119_12	COG	COG3108	NA	NA
UHGV-0110119_12	Structural annotation	PF08291, PF01471, TIGR02869, COG3108	NA	NA
UHGV-0110119_13	eggNOG-mapper	1203606.HMPREF1526_01926	NA	NA
UHGV-0110119_16	PHROG	phrog_2295	NA	unknown function
UHGV-0110119_16	Pfam	PF21722	Glycine-rich domain	Gly_rich_2
UHGV-0110119_16	Structural annotation	PF14686, TIGR03000, COG2512	NA	NA
UHGV-0110119_17	PHROG	phrog_9534	head protein	head and packaging
UHGV-0110119_17	eggNOG-mapper	1519439.JPJG01000037_gene946	COG NOG18825 non supervised orthologous group	NA
UHGV-0110119_18	PHROG	phrog_538	minor tail protein	tail
UHGV-0110119_18	UniRef90	UniRef90_UPI001C113FEF	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0110119_18	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0110119_18	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0110119_18	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0110119_19	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0110119_19	UniRef90	UniRef90_UPI001C0FCFFA	phage tail family protein	NA
UHGV-0110119_19	eggNOG-mapper	536232.CLM_2045	Phage tail protein	NA
UHGV-0110119_19	COG	COG4722	Phage-related protein YomH	NA
UHGV-0110119_19	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0110119_20	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-0110119_20	eggNOG-mapper	1111121.HMPREF1247_0787	nuclear chromosome segregation	NA
UHGV-0110119_20	COG	COG5412	Phage-related protein	NA
UHGV-0110119_20	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-0110119_22	PHROG	phrog_18646	NA	unknown function
UHGV-0110119_22	UniRef90	UniRef90_B6CXF0	Peptidase-colicin	NA
UHGV-0110119_23	PHROG	phrog_885	major tail protein	tail
UHGV-0110119_23	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0110119_23	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0110119_23	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0110119_24	Structural annotation	PF11367	NA	NA
UHGV-0110119_25	PHROG	phrog_17977	NA	unknown function
UHGV-0110119_25	UniRef90	UniRef90_UPI00141211AB	head-tail adaptor protein	NA
UHGV-0110119_25	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0110119_25	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0110119_27	PHROG	phrog_544	major head protein	head and packaging
UHGV-0110119_27	UniRef90	UniRef90_A0A1C6B5R0	S-l_SbsC_C domain-containing protein	NA
UHGV-0110119_27	eggNOG-mapper	1232453.BAIF02000011_gene3359	NA	NA
UHGV-0110119_27	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-0110119_27	Structural annotation	PF03864, PF18316, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0110119_28	UniRef90	UniRef90_A0A6B9SU02	Fibronectin autolysin	NA
UHGV-0110119_28	Structural annotation	PF06810	NA	NA
UHGV-0110119_29	PHROG	phrog_1233	NA	unknown function
UHGV-0110119_29	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-0110119_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0110119_30	UniRef90	UniRef90_A0A4D7AJK9	HK97 gp10 family phage protein	NA
UHGV-0110119_30	eggNOG-mapper	1140001.I571_01837	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0110119_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0110119_30	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0110119_30	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0110119_32	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0110119_32	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0110119_32	UniRef90	UniRef90_A0A4D7AUA1	Phage head morphogenesis protein	NA
UHGV-0110119_32	eggNOG-mapper	1504822.CCNO01000013_gene286	cell adhesion	NA
UHGV-0110119_32	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0110119_32	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0110119_32	COG	COG2369	NA	NA
UHGV-0110119_32	Structural annotation	PF03496, PF04233, TIGR01641, COG2369	NA	NA
UHGV-0110119_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0110119_33	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0110119_33	eggNOG-mapper	673376.F2VHW1_9CAUD	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0110119_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0110119_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0110119_34	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0110119_34	PHROG	phrog_10250	NA	unknown function
UHGV-0110119_34	UniRef90	UniRef90_UPI0018AC3323	PBSX family phage terminase large subunit	NA
UHGV-0110119_34	eggNOG-mapper	476272.RUMHYD_01756	NA	NA
UHGV-0110119_34	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0110119_34	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0110119_34	COG	COG1783	Phage terminase large subunit	NA
UHGV-0110119_34	Structural annotation	PF04466, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0110119_35	UniRef90	UniRef90_UPI0018A8F249	helix-turn-helix domain containing protein	NA
UHGV-0110119_35	eggNOG-mapper	1235790.C805_00037	NA	NA
UHGV-0110119_35	Structural annotation	PF13542	NA	NA
UHGV-0110119_36	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0110119_36	UniRef90	UniRef90_UPI001D0837DD	NA	NA
UHGV-0110119_36	eggNOG-mapper	1347392.CCEZ01000015_gene2854	NA	NA
UHGV-0110119_36	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-0110119_37	Structural annotation	PF10013, NF001638, COG4338	NA	NA
UHGV-0110119_40	Pfam	PF04448	NA	DUF551
UHGV-0110119_40	Structural annotation	NF041588	NA	NA