UHGV-0110173

Genome information

Genome length 36,533 bps

CDS count 55

Completeness 79.89% (medium-quality)

geNomad score 0.9661

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110173
vOTU ID	vOTU-015896
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_238927
BioSample	NA
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	79.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	16
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9661
Virus hallmark genes (geNomad)	17
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	36.09
Jumbo phage	No

Genome content
Genome length	36,533 bps
GC content	44.40%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	55
CDS density	88.98%
Average CDS length	593.89 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110173_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0110173_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0110173_1	UniRef90	UniRef90_UPI0008A8C8AE	recombinase family protein	NA
UHGV-0110173_1	eggNOG-mapper	706434.HMPREF9429_00560	overlaps another CDS with the same product name	NA
UHGV-0110173_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0110173_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0110173_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0110173_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0110173_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-0110173_3	UniRef90	UniRef90_G0VPB1	Prophage LambdaCh01	NA
UHGV-0110173_3	eggNOG-mapper	1273103.NM10_02427	competence protein COMEC	NA
UHGV-0110173_3	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0110173_3	Structural annotation	PF02805	NA	NA
UHGV-0110173_4	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0110173_4	PHROG	phrog_1412	antitoxin mazE-like	moron, auxiliary metabolic gene and host takeover
UHGV-0110173_4	UniRef90	UniRef90_S7HSR2	PemK family protein	NA
UHGV-0110173_4	eggNOG-mapper	1273103.NM10_02422	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0110173_4	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0110173_4	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0110173_4	Structural annotation	PF02452, NF007386, COG2337	NA	NA
UHGV-0110173_5	PHROG	phrog_9418	NA	unknown function
UHGV-0110173_5	UniRef90	UniRef90_S7J408	Membrane protein	NA
UHGV-0110173_5	eggNOG-mapper	1273103.NM10_02417	NA	NA
UHGV-0110173_5	Structural annotation	PF10233	NA	NA
UHGV-0110173_6	PHROG	phrog_6148	beta-lactamase-inhibitor protein BLIP	moron, auxiliary metabolic gene and host takeover
UHGV-0110173_6	UniRef90	UniRef90_S7J924	Beta-lactamase-inhibitor protein BLIP	NA
UHGV-0110173_6	eggNOG-mapper	1273103.NM10_02412	NA	NA
UHGV-0110173_6	Pfam	PF12978	NA	DUF3862
UHGV-0110173_6	Structural annotation	PF12978	NA	NA
UHGV-0110173_7	PHROG	phrog_87	metallo-protease	other
UHGV-0110173_7	UniRef90	UniRef90_A0A269TDX8	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0110173_7	eggNOG-mapper	1273103.NM10_01234	NA	NA
UHGV-0110173_7	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0110173_7	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0110173_7	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0110173_8	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0110173_8	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0110173_8	UniRef90	UniRef90_A0A848ETI3	Helix-turn-helix domain-containing protein	NA
UHGV-0110173_8	eggNOG-mapper	1273103.NM10_01229	Transcriptional	NA
UHGV-0110173_8	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0110173_8	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0110173_8	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0110173_8	Structural annotation	PF01381, MF_00535, NF041951, COG1396	NA	NA
UHGV-0110173_9	KOfam	K18831	higA; HTH-type transcriptional regulator / antitoxin HigA	NA
UHGV-0110173_9	UniRef90	UniRef90_A0A848EX22	Helix-turn-helix transcriptional regulator	NA
UHGV-0110173_9	eggNOG-mapper	913865.DOT_2640	Transcriptional	NA
UHGV-0110173_9	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0110173_9	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0110173_9	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0110173_15	PHROG	phrog_21028	NA	unknown function
UHGV-0110173_15	eggNOG-mapper	1415774.U728_731	NA	NA
UHGV-0110173_15	Structural annotation	PF05354, TIGR01563, COG5614	NA	NA
UHGV-0110173_18	PHROG	phrog_1672	NA	unknown function
UHGV-0110173_25	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0110173_25	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0110173_25	UniRef90	UniRef90_G0VPC5	Cobyrinic acid ac-diamide synthase	NA
UHGV-0110173_25	eggNOG-mapper	1273103.NM10_02332	AAA domain	NA
UHGV-0110173_25	Pfam	PF13614	AAA domain	AAA_31
UHGV-0110173_25	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0110173_25	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0110173_26	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0110173_26	PHROG	phrog_4715	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0110173_26	UniRef90	UniRef90_S7HSP3	ParB domain-containing protein	NA
UHGV-0110173_26	eggNOG-mapper	1273103.NM10_02327	ParB-like nuclease domain	NA
UHGV-0110173_26	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0110173_26	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0110173_28	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0110173_28	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0110173_28	eggNOG-mapper	1064535.MELS_1085	NA	NA
UHGV-0110173_28	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0110173_29	UniRef90	UniRef90_A0A7X2XH56	HNH domain-containing protein	NA
UHGV-0110173_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0110173_32	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0110173_32	UniRef90	UniRef90_UPI0004021AD4	NA	NA
UHGV-0110173_32	eggNOG-mapper	679201.HMPREF9334_00472	NA	NA
UHGV-0110173_32	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0110173_32	Structural annotation	PF07374, MF_00245, TIGR01636, COG2739	NA	NA
UHGV-0110173_33	KOfam	K22014	Nu1, Noh; terminase small subunit / prophage DNA-packing protein	NA
UHGV-0110173_33	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0110173_33	UniRef90	UniRef90_UPI001E630431	terminase small subunit	NA
UHGV-0110173_33	eggNOG-mapper	864563.HMPREF9166_0572	transposase activity	NA
UHGV-0110173_33	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0110173_33	Structural annotation	PF07471, COG4220	NA	NA
UHGV-0110173_34	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0110173_34	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0110173_34	UniRef90	UniRef90_UPI0004E20CA1	phage terminase large subunit family protein	NA
UHGV-0110173_34	eggNOG-mapper	864563.HMPREF9166_0571	Phage terminase large subunit (GpA)	NA
UHGV-0110173_34	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0110173_34	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0110173_34	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0110173_34	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0110173_35	PHROG	phrog_20307	NA	unknown function
UHGV-0110173_35	UniRef90	UniRef90_A0A4S3L0W6	Peptidylprolyl isomerase	NA
UHGV-0110173_35	eggNOG-mapper	665959.HMPREF1013_00846	NA	NA
UHGV-0110173_35	Structural annotation	PF19645, COG1382	NA	NA
UHGV-0110173_36	PHROG	phrog_21	portal protein	head and packaging
UHGV-0110173_36	UniRef90	UniRef90_UPI001D0163DC	phage portal protein	NA
UHGV-0110173_36	eggNOG-mapper	1392502.JNIO01000008_gene1309	Phage portal protein, lambda family	NA
UHGV-0110173_36	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0110173_36	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0110173_36	COG	COG5511	Phage capsid protein	NA
UHGV-0110173_36	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0110173_37	KOfam	K06904	NA	NA
UHGV-0110173_37	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0110173_37	UniRef90	UniRef90_UPI001C06061D	HK97 family phage prohead protease	NA
UHGV-0110173_37	eggNOG-mapper	1392502.JNIO01000008_gene1310	Caudovirus prohead protease	NA
UHGV-0110173_37	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0110173_37	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0110173_37	COG	COG3087	Cell division protein FtsN	NA
UHGV-0110173_37	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0110173_38	PHROG	phrog_122	head decoration	head and packaging
UHGV-0110173_38	UniRef90	UniRef90_UPI000C77F2EE	NA	NA
UHGV-0110173_38	eggNOG-mapper	864563.HMPREF9166_0567	NA	NA
UHGV-0110173_38	Pfam	PF09956	NA	DUF2190
UHGV-0110173_38	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0110173_38	Structural annotation	PF09956, COG5471	NA	NA
UHGV-0110173_39	PHROG	phrog_2551	minor tail protein	tail
UHGV-0110173_39	UniRef90	UniRef90_A0A0G3W8P4	Pro-phage ATP-binding sugar transporter	NA
UHGV-0110173_39	eggNOG-mapper	1392502.JNIO01000008_gene1312	NA	NA
UHGV-0110173_39	Structural annotation	PF13856	NA	NA
UHGV-0110173_40	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0110173_40	UniRef90	UniRef90_UPI0004E0E33D	phage tail protein	NA
UHGV-0110173_40	eggNOG-mapper	1392502.JNIO01000008_gene1313	Prophage minor tail protein Z (GPZ)	NA
UHGV-0110173_40	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0110173_40	Structural annotation	PF06763	NA	NA
UHGV-0110173_41	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0110173_41	eggNOG-mapper	864563.HMPREF9166_0564	NA	NA
UHGV-0110173_41	Structural annotation	PF09646, COG5003	NA	NA
UHGV-0110173_42	PHROG	phrog_17039	NA	unknown function
UHGV-0110173_42	eggNOG-mapper	1262914.BN533_00995	Product inferred by homology to UniProt	NA
UHGV-0110173_43	KOfam	K06907	NA	NA
UHGV-0110173_43	PHROG	phrog_23	tail sheath	tail
UHGV-0110173_43	UniRef90	UniRef90_UPI001D016AAA	phage tail sheath family protein	NA
UHGV-0110173_43	eggNOG-mapper	1392502.JNIO01000008_gene1316	COG3497 Phage tail sheath protein FI	NA
UHGV-0110173_43	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0110173_43	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0110173_44	KOfam	K06908	NA	NA
UHGV-0110173_44	PHROG	phrog_55	head closure	connector
UHGV-0110173_44	UniRef90	UniRef90_UPI001D0104CC	phage major tail tube protein	NA
UHGV-0110173_44	eggNOG-mapper	864563.HMPREF9166_0561	tail tube protein	NA
UHGV-0110173_44	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0110173_44	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0110173_44	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0110173_45	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0110173_45	Structural annotation	PF10109	NA	NA
UHGV-0110173_46	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0110173_46	UniRef90	UniRef90_UPI001D0052A2	phage tail tape measure protein	NA
UHGV-0110173_46	eggNOG-mapper	864563.HMPREF9166_0558	Phage tail tape measure protein, TP901 family	NA
UHGV-0110173_46	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0110173_46	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0110173_46	COG	COG5283	Phage-related tail protein	NA
UHGV-0110173_46	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0110173_47	PHROG	phrog_46	tail protein	tail
UHGV-0110173_47	UniRef90	UniRef90_A0A6N9P6I0	Phage tail protein	NA
UHGV-0110173_47	eggNOG-mapper	1280706.AUJE01000010_gene670	Phage Tail Protein X	NA
UHGV-0110173_47	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0110173_47	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0110173_47	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0110173_48	KOfam	K06905	NA	NA
UHGV-0110173_48	PHROG	phrog_52	tail protein	tail
UHGV-0110173_48	UniRef90	UniRef90_A0A4P6BIY2	Bacteriophage late control gene D protein	NA
UHGV-0110173_48	eggNOG-mapper	1392502.JNIO01000008_gene1322	COG3500 Phage protein D	NA
UHGV-0110173_48	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-0110173_48	COG	COG3500	NA	NA
UHGV-0110173_48	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0110173_49	PHROG	phrog_6142	baseplate assembly protein	tail
UHGV-0110173_49	UniRef90	UniRef90_UPI0018C4C5FA	phage baseplate assembly protein V	NA
UHGV-0110173_49	eggNOG-mapper	1392502.JNIO01000008_gene1259	Baseplate assembly protein	NA
UHGV-0110173_49	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0110173_49	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0110173_49	Structural annotation	PF04717, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-0110173_50	PHROG	phrog_281	PAAR motif of membran proteins	moron, auxiliary metabolic gene and host takeover
UHGV-0110173_50	UniRef90	UniRef90_UPI001D01C99F	PAAR domain-containing protein	NA
UHGV-0110173_50	eggNOG-mapper	546271.Selsp_1317	PAAR motif	NA
UHGV-0110173_50	Pfam	PF05488	PAAR motif	PAAR_motif
UHGV-0110173_50	Structural annotation	PF05488, NF033420, COG4104	NA	NA
UHGV-0110173_51	KOfam	K06906	NA	NA
UHGV-0110173_51	PHROG	phrog_76	tail protein	tail
UHGV-0110173_51	UniRef90	UniRef90_UPI0006900F59	phage tail protein	NA
UHGV-0110173_51	eggNOG-mapper	1392502.JNIO01000008_gene1324	Phage P2 GpU	NA
UHGV-0110173_51	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0110173_51	COG	COG3499	NA	NA
UHGV-0110173_52	KOfam	K06903	NA	NA
UHGV-0110173_52	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0110173_52	UniRef90	UniRef90_UPI0004E1B6D6	GPW/gp25 family protein	NA
UHGV-0110173_52	eggNOG-mapper	1392502.JNIO01000008_gene1325	GPW Gp25 family protein	NA
UHGV-0110173_52	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0110173_52	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0110173_53	PHROG	phrog_6	baseplate protein	tail
UHGV-0110173_53	UniRef90	UniRef90_UPI0004E235ED	baseplate J/gp47 family protein	NA
UHGV-0110173_53	eggNOG-mapper	1280706.AUJE01000010_gene676	Baseplate J-like protein	NA
UHGV-0110173_53	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0110173_53	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0110173_53	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0110173_54	PHROG	phrog_14404	baseplate protein	tail
UHGV-0110173_54	UniRef90	UniRef90_A0A1M6GFJ1	Phage tail protein, P2 protein I family	NA
UHGV-0110173_54	eggNOG-mapper	927704.SELR_16640	Phage tail protein (Tail_P2_I)	NA
UHGV-0110173_54	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0110173_54	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0110173_54	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0110173_54	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0110173_55	PHROG	phrog_7037	tail fiber protein	tail
UHGV-0110173_55	UniRef90	UniRef90_UPI0018C70641	phage tail protein	NA
UHGV-0110173_55	eggNOG-mapper	927704.SELR_16630	Phage tail-collar fibre protein	NA
UHGV-0110173_55	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0110173_55	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0110173_55	Structural annotation	PF12571, NF012201	NA	NA