UHGV-0110188

Genome information

Genome length 37,847 bps

CDS count 61

Completeness 99.50% (high-quality)

geNomad score 0.9764

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110188
vOTU ID	vOTU-014801
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_266735
BioSample	NA
Country	United States
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	99.50% (high-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	1
Recoded stop codon	No

Viral signal
geNomad score	0.9764
Virus hallmark genes (geNomad)	12
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	30.29
Jumbo phage	No

Genome content
Genome length	37,847 bps
GC content	60.13%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	61
CDS density	90.77%
Average CDS length	567.64 bps
tRNA count	0
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110188_1	PHROG	phrog_13256	NA	unknown function
UHGV-0110188_1	eggNOG-mapper	1160721.RBI_II00522	NA	NA
UHGV-0110188_3	PHROG	phrog_18955	NA	unknown function
UHGV-0110188_3	UniRef90	UniRef90_UPI00164D2830	phosphodiester glycosidase family protein	NA
UHGV-0110188_3	Pfam	PF09992	Phosphodiester glycosidase	NAGPA
UHGV-0110188_3	COG	COG4632	Sugar-P-sugar glycosidase (uncovering enzyme, UCE), NAGPA superfamily	NA
UHGV-0110188_3	Structural annotation	PF09992, COG4632	NA	NA
UHGV-0110188_4	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0110188_4	PHROG	phrog_894	endolysin	lysis
UHGV-0110188_4	UniRef90	UniRef90_K1TJK4	Peptidase_M15_3 domain-containing protein (Fragment)	NA
UHGV-0110188_4	eggNOG-mapper	1235797.C816_04171	Peptidase M15	NA
UHGV-0110188_4	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0110188_4	COG	COG3108	NA	NA
UHGV-0110188_4	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0110188_6	eggNOG-mapper	742738.HMPREF9460_04058	NA	NA
UHGV-0110188_7	UniRef90	UniRef90_A0A6N3FXW7	Helix-turn-helix	NA
UHGV-0110188_7	eggNOG-mapper	742738.HMPREF9460_04059	Helix-turn-helix XRE-family like proteins	NA
UHGV-0110188_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0110188_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0110188_7	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0110188_9	Structural annotation	PF01402, NF008671	NA	NA
UHGV-0110188_12	PHROG	phrog_4709	NA	unknown function
UHGV-0110188_12	eggNOG-mapper	693746.OBV_41590	NA	NA
UHGV-0110188_12	AcrCatalog	cluster_3300	NA	NA
UHGV-0110188_15	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0110188_17	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0110188_18	KOfam	K14059	int; integrase	NA
UHGV-0110188_18	PHROG	phrog_1	integrase	integration and excision
UHGV-0110188_18	UniRef90	UniRef90_G4L0W3	Tyr recombinase domain-containing protein	NA
UHGV-0110188_18	eggNOG-mapper	693746.OBV_43340	Belongs to the 'phage' integrase family	NA
UHGV-0110188_18	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0110188_18	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0110188_18	Structural annotation	PF00589, PF13495, MF_02055, TIGR02225, COG4974	NA	NA
UHGV-0110188_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0110188_19	Structural annotation	PF01381, MF_02017, TIGR03070, COG3655	NA	NA
UHGV-0110188_20	eggNOG-mapper	742741.HMPREF9475_00398	NA	NA
UHGV-0110188_22	UniRef90	UniRef90_UPI001E54DE4F	helix-turn-helix domain-containing protein	NA
UHGV-0110188_22	eggNOG-mapper	1226322.HMPREF1545_00148	Transcriptional	NA
UHGV-0110188_22	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0110188_22	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-0110188_23	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0110188_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0110188_23	UniRef90	UniRef90_UPI00030EB95F	helix-turn-helix domain-containing protein	NA
UHGV-0110188_23	eggNOG-mapper	1007096.BAGW01000011_gene2356	sequence-specific DNA binding	NA
UHGV-0110188_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0110188_23	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0110188_23	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0110188_24	eggNOG-mapper	1235835.C814_03153	NA	NA
UHGV-0110188_24	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0110188_25	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0110188_25	UniRef90	UniRef90_UPI001C01DF91	helix-turn-helix transcriptional regulator	NA
UHGV-0110188_25	eggNOG-mapper	1226322.HMPREF1545_00092	Helix-turn-helix XRE-family like proteins	NA
UHGV-0110188_25	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-0110188_25	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0110188_25	Structural annotation	PF01381, NF040522, COG1476	NA	NA
UHGV-0110188_26	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0110188_26	UniRef90	UniRef90_A0A7X3DHC7	Helix-turn-helix domain-containing protein	NA
UHGV-0110188_26	eggNOG-mapper	1007096.BAGW01000033_gene1617	ROK family	NA
UHGV-0110188_26	COG	COG3355	Predicted transcriptional regulator	NA
UHGV-0110188_26	Structural annotation	PF04182, NF040939, COG3355	NA	NA
UHGV-0110188_27	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0110188_27	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0110188_27	UniRef90	UniRef90_UPI00195856D7	AAA family ATPase	NA
UHGV-0110188_27	eggNOG-mapper	1226322.HMPREF1545_00095	DnaB-like helicase N terminal domain	NA
UHGV-0110188_27	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0110188_27	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0110188_27	COG	COG0305	Replicative DNA helicase	NA
UHGV-0110188_27	Structural annotation	PF03796, PF00772, MF_04155, NF005240, COG0305	NA	NA
UHGV-0110188_29	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0110188_29	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0110188_29	UniRef90	UniRef90_UPI001BB48231	ParA family protein	NA
UHGV-0110188_29	eggNOG-mapper	693746.OBV_19850	Anion-transporting ATPase	NA
UHGV-0110188_29	Pfam	PF13614	AAA domain	AAA_31
UHGV-0110188_29	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0110188_29	Structural annotation	PF13614, MF_00533, TIGR03453, COG1192	NA	NA
UHGV-0110188_30	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0110188_30	PHROG	phrog_27290	NA	unknown function
UHGV-0110188_30	UniRef90	UniRef90_UPI001C029D7C	ParB N-terminal domain-containing protein	NA
UHGV-0110188_30	eggNOG-mapper	742738.HMPREF9460_00856	ParB-like nuclease domain	NA
UHGV-0110188_30	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0110188_30	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0110188_30	Structural annotation	PF02195, MF_02015, TIGR04285, COG1475	NA	NA
UHGV-0110188_33	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0110188_33	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0110188_33	UniRef90	UniRef90_UPI001C02B0E9	single-stranded DNA-binding protein	NA
UHGV-0110188_33	eggNOG-mapper	693746.OBV_12860	Single-strand binding protein family	NA
UHGV-0110188_33	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0110188_33	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0110188_33	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0110188_33	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0110188_33	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0110188_34	PHROG	phrog_924	NA	unknown function
UHGV-0110188_34	UniRef90	UniRef90_A0A2V2EEG3	NA	NA
UHGV-0110188_34	Pfam	PF04448	NA	DUF551
UHGV-0110188_34	Structural annotation	NF041588	NA	NA
UHGV-0110188_35	PHROG	phrog_3136	NA	unknown function
UHGV-0110188_35	UniRef90	UniRef90_A0A3D0HBD2	ASCH domain-containing protein	NA
UHGV-0110188_35	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-0110188_35	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-0110188_36	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0110188_36	Pfam	PF13240	zinc-ribbon domain	zinc_ribbon_2
UHGV-0110188_39	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0110188_39	eggNOG-mapper	693746.OBV_19950	NA	NA
UHGV-0110188_39	Structural annotation	PF05840	NA	NA
UHGV-0110188_40	UniRef90	UniRef90_UPI001F232519	cysteine-rich KTR domain-containing protein	NA
UHGV-0110188_40	eggNOG-mapper	1226322.HMPREF1545_00110	Cysteine-rich KTR	NA
UHGV-0110188_40	Pfam	PF14205	Cysteine-rich KTR	Cys_rich_KTR
UHGV-0110188_41	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0110188_41	UniRef90	UniRef90_UPI001EDE5545	HNH endonuclease	NA
UHGV-0110188_41	eggNOG-mapper	693746.OBV_19960	HNH endonuclease	NA
UHGV-0110188_41	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0110188_41	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0110188_41	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0110188_42	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0110188_42	PHROG	phrog_21498	NA	unknown function
UHGV-0110188_42	UniRef90	UniRef90_C7MM70	ParB-like nuclease	NA
UHGV-0110188_42	eggNOG-mapper	469378.Ccur_02830	DNA binding	NA
UHGV-0110188_42	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0110188_42	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0110188_42	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0110188_42	Structural annotation	PF02195, MF_02015, TIGR04285, TIGR01712, COG1475	NA	NA
UHGV-0110188_43	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0110188_43	UniRef90	UniRef90_UPI001EDE2A13	phage terminase small subunit P27 family	NA
UHGV-0110188_43	eggNOG-mapper	1007096.BAGW01000012_gene2373	Phage terminase, small subunit	NA
UHGV-0110188_43	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0110188_43	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0110188_43	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0110188_43	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0110188_44	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0110188_44	UniRef90	UniRef90_A0A845R4S1	Terminase large subunit	NA
UHGV-0110188_44	eggNOG-mapper	742738.HMPREF9460_00872	Phage Terminase	NA
UHGV-0110188_44	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0110188_44	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0110188_44	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0110188_44	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0110188_46	PHROG	phrog_12	portal protein	head and packaging
UHGV-0110188_46	UniRef90	UniRef90_UPI001958B72F	phage portal protein	NA
UHGV-0110188_46	eggNOG-mapper	1501230.ET33_02290	Phage portal protein	NA
UHGV-0110188_46	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0110188_46	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0110188_46	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0110188_46	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0110188_47	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0110188_47	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0110188_47	UniRef90	UniRef90_UPI00124513AA	Clp protease ClpP	NA
UHGV-0110188_47	eggNOG-mapper	557436.Lreu_1115	Belongs to the peptidase S14 family	NA
UHGV-0110188_47	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0110188_47	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0110188_47	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0110188_48	PHROG	phrog_10	major head protein	head and packaging
UHGV-0110188_48	UniRef90	UniRef90_UPI000B37FFEF	phage major capsid protein	NA
UHGV-0110188_48	eggNOG-mapper	742740.HMPREF9474_04304	Phage capsid family	NA
UHGV-0110188_48	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0110188_48	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0110188_48	Structural annotation	PF05065, PF14182, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0110188_49	UniRef90	UniRef90_UPI001C018007	head-tail connector protein	NA
UHGV-0110188_49	eggNOG-mapper	742738.HMPREF9460_00878	NA	NA
UHGV-0110188_49	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0110188_49	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0110188_50	PHROG	phrog_25	head closure Hc1	connector
UHGV-0110188_50	UniRef90	UniRef90_UPI001898DBDF	phage head closure protein	NA
UHGV-0110188_50	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0110188_50	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0110188_50	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0110188_50	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0110188_51	UniRef90	UniRef90_UPI00102FC317	phage tail protein	NA
UHGV-0110188_51	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0110188_51	Structural annotation	PF05657	NA	NA
UHGV-0110188_52	UniRef90	UniRef90_R5IIS5	HK97 gp10 family phage protein	NA
UHGV-0110188_52	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0110188_52	Structural annotation	TIGR01725	NA	NA
UHGV-0110188_53	PHROG	phrog_88	major tail protein	tail
UHGV-0110188_53	UniRef90	UniRef90_R5EB96	Phage major tail protein phi13 family	NA
UHGV-0110188_53	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0110188_55	PHROG	phrog_23464	NA	unknown function
UHGV-0110188_55	eggNOG-mapper	33035.JPJF01000023_gene3232	phage tail tape measure protein	NA
UHGV-0110188_55	COG	COG5412	Phage-related protein	NA
UHGV-0110188_55	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0110188_57	PHROG	phrog_32744	NA	unknown function
UHGV-0110188_57	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-0110188_57	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-0110188_58	PHROG	phrog_3904	tail fiber protein	tail
UHGV-0110188_58	eggNOG-mapper	1226322.HMPREF1545_00064	NA	NA
UHGV-0110188_59	PHROG	phrog_4105	NA	unknown function
UHGV-0110188_59	eggNOG-mapper	428125.CLOLEP_01431	NA	NA
UHGV-0110188_60	PHROG	phrog_13256	NA	unknown function
UHGV-0110188_60	eggNOG-mapper	1226322.HMPREF1545_00132	NA	NA