UHGV-0110190

Genome information

Genome length 44,149 bps

CDS count 58

Completeness 100.00% (complete)

geNomad score 0.9784

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110190
vOTU ID	vOTU-045621
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_253000
BioSample	SAMEA3708749
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	DTR
CheckV completeness	100.00% (complete)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	14
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9784
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	51.99
Jumbo phage	No

Genome content
Genome length	44,149 bps
GC content	51.35%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	58
CDS density	91.42%
Average CDS length	700.55 bps
tRNA count	2
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110190_1	eggNOG-mapper	1204521.I7B2N7_9CAUD	NA	NA
UHGV-0110190_5	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0110190_5	UniRef90	UniRef90_UPI0004012271	YqaJ viral recombinase family protein	NA
UHGV-0110190_5	eggNOG-mapper	1121866.AUGK01000003_gene1405	YqaJ viral recombinase family	NA
UHGV-0110190_5	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0110190_5	Structural annotation	PF09588, TIGR03033, COG5377	NA	NA
UHGV-0110190_7	PHROG	phrog_1252	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0110190_7	UniRef90	UniRef90_UPI0018F793FF	ERF family protein	NA
UHGV-0110190_7	eggNOG-mapper	1121866.AUGK01000003_gene1403	DNA replication proofreading	NA
UHGV-0110190_7	COG	COG0417	DNA polymerase B elongation subunit	NA
UHGV-0110190_7	Structural annotation	PF08490, MF_04100, TIGR00592, COG0417	NA	NA
UHGV-0110190_8	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-0110190_8	PHROG	phrog_1829	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0110190_8	UniRef90	UniRef90_UPI0012458B1E	phage/plasmid primase, P4 family	NA
UHGV-0110190_8	eggNOG-mapper	1410670.JHXF01000015_gene2274	Phage plasmid primase, P4 family	NA
UHGV-0110190_8	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-0110190_8	Pfam	PF19263	NA	DUF5906
UHGV-0110190_8	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-0110190_8	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-0110190_8	Structural annotation	PF08706, PF05272, PF02257, MF_04000, NF011296, COG3378, COG4983	NA	NA
UHGV-0110190_11	Structural annotation	TIGR03188, COG1694	NA	NA
UHGV-0110190_12	PHROG	phrog_236	nucleotide kinase	other
UHGV-0110190_12	UniRef90	UniRef90_A0A843F518	NA	NA
UHGV-0110190_12	eggNOG-mapper	674081.D1L2X8_9CAUD	NA	NA
UHGV-0110190_12	Pfam	PF11753	NA	DUF3310
UHGV-0110190_17	KOfam	K15711	SMARCA3, HLTF; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A3 [EC:5.6.2. 2.3.2.27]	NA
UHGV-0110190_17	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0110190_17	UniRef90	UniRef90_UPI001C3C32E4	DEAD/DEAH box helicase	NA
UHGV-0110190_17	eggNOG-mapper	1219626.HMPREF1639_07295	SNF2 family N-terminal domain	NA
UHGV-0110190_17	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0110190_17	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0110190_17	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0110190_17	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0110190_17	Structural annotation	PF00176, PF00271, MF_01821, NF041790, COG0553	NA	NA
UHGV-0110190_20	UniRef90	UniRef90_UPI0015F31553	VRR-NUC domain-containing protein	NA
UHGV-0110190_20	eggNOG-mapper	393480.FNP_1670	pfam vrr-nuc	NA
UHGV-0110190_20	Pfam	PF01870	Archaeal holliday junction resolvase (hjc)	Hjc
UHGV-0110190_20	COG	COG1591	Holliday junction resolvase Hjc, archaeal type	NA
UHGV-0110190_20	Structural annotation	PF01870, MF_01490, NF002581, COG1591	NA	NA
UHGV-0110190_22	PHROG	phrog_16683	NA	unknown function
UHGV-0110190_22	UniRef90	UniRef90_UPI0015F03F2A	amidoligase family protein	NA
UHGV-0110190_22	eggNOG-mapper	641112.ACOK01000099_gene354	NA	NA
UHGV-0110190_28	PHROG	phrog_4264	NA	unknown function
UHGV-0110190_28	eggNOG-mapper	1500386.A0A060AF46_9CAUD	NA	NA
UHGV-0110190_32	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0110190_32	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0110190_32	UniRef90	UniRef90_A0A8F1W6A8	Class V aminotransferase	NA
UHGV-0110190_32	eggNOG-mapper	1151292.QEW_4547	NA	NA
UHGV-0110190_32	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0110190_32	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0110190_32	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0110190_34	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0110190_34	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0110190_34	UniRef90	UniRef90_A0A133V4J6	Flavin-dependent thymidylate synthase	NA
UHGV-0110190_34	eggNOG-mapper	243231.GSU3106	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NADPH and FADH(2) as the reductant	NA
UHGV-0110190_34	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0110190_34	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0110190_34	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0110190_34	HAMAP	MF_01408	Flavin-dependent thymidylate synthase [thyX]	NA
UHGV-0110190_34	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0110190_35	KOfam	K21636	nrdD; ribonucleoside-triphosphate reductase (formate) [EC:1.1.98.6]	NA
UHGV-0110190_35	PHROG	phrog_487	NrdD-like anaerobic ribonucleotide reductase large subunit	moron, auxiliary metabolic gene and host takeover
UHGV-0110190_35	UniRef90	UniRef90_R5A872	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0110190_35	eggNOG-mapper	665956.HMPREF1032_01738	Ribonucleoside-triphosphate reductase	NA
UHGV-0110190_35	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0110190_35	NCBIFam	NF005497.0	anaerobic ribonucleoside triphosphate reductase	NA
UHGV-0110190_35	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0110190_35	Structural annotation	PF13597, MF_02058, NF005497, COG1328	NA	NA
UHGV-0110190_37	UniRef90	UniRef90_A0A1M6UVM7	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0110190_37	eggNOG-mapper	665956.HMPREF1032_01737	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0110190_37	Pfam	PF13597	Anaerobic ribonucleoside-triphosphate reductase	NRDD
UHGV-0110190_37	COG	COG1328	Anaerobic ribonucleoside-triphosphate reductase	NA
UHGV-0110190_40	PHROG	phrog_962	holin	lysis
UHGV-0110190_40	UniRef90	UniRef90_A0A6P1M9E5	Phage holin	NA
UHGV-0110190_40	eggNOG-mapper	1120998.AUFC01000022_gene406	Bacteriophage holin	NA
UHGV-0110190_40	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-0110190_40	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-0110190_40	COG	COG5546	NA	NA
UHGV-0110190_40	Structural annotation	COG5546	NA	NA
UHGV-0110190_42	PHROG	phrog_21825	endolysin	lysis
UHGV-0110190_42	UniRef90	UniRef90_UPI00164B63C2	CHAP domain-containing protein	NA
UHGV-0110190_42	eggNOG-mapper	702459.BBPR_0931	NLP P60 protein	NA
UHGV-0110190_42	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0110190_43	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0110190_43	UniRef90	UniRef90_A0A7X2P7N6	Phage terminase large subunit	NA
UHGV-0110190_43	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0110190_43	COG	COG5410	NA	NA
UHGV-0110190_43	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0110190_44	PHROG	phrog_7339	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0110190_44	UniRef90	UniRef90_A0A843FEB4	Metallophosphoesterase	NA
UHGV-0110190_44	eggNOG-mapper	391009.Tmel_1444	metallophosphoesterase	NA
UHGV-0110190_44	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-0110190_44	COG	COG1408	Predicted phosphohydrolase, MPP superfamily	NA
UHGV-0110190_44	Structural annotation	PF12850, MF_00325, NF003118, COG1311	NA	NA
UHGV-0110190_45	PHROG	phrog_64	portal protein	head and packaging
UHGV-0110190_45	UniRef90	UniRef90_UPI001BAB50B9	phage portal protein	NA
UHGV-0110190_45	eggNOG-mapper	1232453.BAIF02000058_gene1625	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0110190_45	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0110190_45	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0110190_46	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0110190_46	Pfam	PF14265	NA	DUF4355
UHGV-0110190_47	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0110190_47	UniRef90	UniRef90_UPI001A9B2641	NA	NA
UHGV-0110190_47	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0110190_47	Pfam	PF17236	NA	DUF5309
UHGV-0110190_47	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0110190_48	UniRef90	UniRef90_R6N215	Phage QLRG family putative DNA packaging	NA
UHGV-0110190_51	Structural annotation	PF08873, COG5003	NA	NA
UHGV-0110190_52	PHROG	phrog_158	major tail protein	tail
UHGV-0110190_52	eggNOG-mapper	1298920.KI911353_gene2652	NA	NA
UHGV-0110190_52	Pfam	PF08813	Phage tail tube protein, TTP	Phage_tail_3
UHGV-0110190_52	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0110190_55	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0110190_55	eggNOG-mapper	445972.ANACOL_01854	tape measure	NA
UHGV-0110190_55	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0110190_56	PHROG	phrog_1194	NA	unknown function
UHGV-0110190_56	eggNOG-mapper	673837.D2IZU9_9CAUD	NA	NA
UHGV-0110190_56	Pfam	PF20458	NA	DUF6711
UHGV-0110190_58	COG	COG5301	Phage-related tail fiber protein	NA