UHGV-0110342

Genome information

Genome length 17,577 bps

CDS count 23

Completeness 89.89% (medium-quality)

geNomad score 0.9824

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110342
vOTU ID	vOTU-027676
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_257682
BioSample	SAMEA3708842
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	89.89% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	9
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9824
Virus hallmark genes (geNomad)	5
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	34.63
Jumbo phage	No

Genome content
Genome length	17,577 bps
GC content	36.00%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	23
CDS density	91.01%
Average CDS length	696.26 bps
tRNA count	1
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110342_1	PHROG	phrog_5240	tail fiber protein	tail
UHGV-0110342_1	UniRef90	UniRef90_A0A843ITW6	SGNH_hydro domain-containing protein	NA
UHGV-0110342_1	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-0110342_3	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-0110342_3	UniRef90	UniRef90_A0A7T7ZAL4	Lower collar protein	NA
UHGV-0110342_3	eggNOG-mapper	10753.B7SSN2_BPNF	NA	NA
UHGV-0110342_4	PHROG	phrog_2038	upper collar connector	connector
UHGV-0110342_4	UniRef90	UniRef90_P04332	Portal protein	NA
UHGV-0110342_4	eggNOG-mapper	10753.B7SSN1_BPNF	Phage Connector (GP10)	NA
UHGV-0110342_4	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-0110342_4	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-0110342_5	PHROG	phrog_2248	tail protein	tail
UHGV-0110342_5	UniRef90	UniRef90_A0A843HJQ1	Caud_tail_N domain-containing protein	NA
UHGV-0110342_5	eggNOG-mapper	10756.DIT9_BPPH2	NA	NA
UHGV-0110342_5	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-0110342_5	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-0110342_5	Structural annotation	PF20934, PF16838	NA	NA
UHGV-0110342_7	PHROG	phrog_2006	major head protein	head and packaging
UHGV-0110342_7	UniRef90	UniRef90_A0A843HGC7	Ig-like domain-containing protein	NA
UHGV-0110342_7	eggNOG-mapper	10756.CAPSD_BPPH2	viral capsid	NA
UHGV-0110342_7	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-0110342_10	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0110342_10	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0110342_10	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0110342_10	Structural annotation	PF18013	NA	NA
UHGV-0110342_11	PHROG	phrog_7698	endolysin	lysis
UHGV-0110342_11	UniRef90	UniRef90_U2W578	Cpl-7 lysozyme protein	NA
UHGV-0110342_11	eggNOG-mapper	1321782.HMPREF1986_02283	NlpC/P60 family	NA
UHGV-0110342_11	Pfam	PF05382	Bacteriophage peptidoglycan hydrolase	Amidase_5
UHGV-0110342_11	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-0110342_11	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0110342_11	Structural annotation	PF05382, PF08230, NF033742	NA	NA
UHGV-0110342_12	PHROG	phrog_199	holin	lysis
UHGV-0110342_12	UniRef90	UniRef90_A0A843HKJ8	Phage holin family protein	NA
UHGV-0110342_12	eggNOG-mapper	1235794.C811_00437	Bacteriophage holin family	NA
UHGV-0110342_12	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0110342_12	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0110342_12	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0110342_13	PHROG	phrog_2150	terminase	head and packaging
UHGV-0110342_13	UniRef90	UniRef90_A0A843HJH1	Phage DNA encapsidation protein	NA
UHGV-0110342_13	eggNOG-mapper	338473.A6XAE1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-0110342_13	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-0110342_13	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0110342_15	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0110342_15	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0110342_15	UniRef90	UniRef90_A0A349YIS4	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0110342_15	eggNOG-mapper	610130.Closa_2507	dUTPase	NA
UHGV-0110342_15	Pfam	PF00692	dUTPase	dUTPase
UHGV-0110342_15	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0110342_15	Structural annotation	PF00692, MF_00116, TIGR00576, COG0756	NA	NA
UHGV-0110342_16	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-0110342_16	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0110342_16	UniRef90	UniRef90_A0A843GSA4	DNA-directed DNA polymerase	NA
UHGV-0110342_16	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-0110342_16	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-0110342_16	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-0110342_18	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-0110342_18	Structural annotation	PF17427	NA	NA
UHGV-0110342_20	Structural annotation	PF07865	NA	NA
UHGV-0110342_22	Structural annotation	PF17548	NA	NA