UHGV-0110347

Genome information

Genome length 21,580 bps

CDS count 34

Completeness 59.19% (medium-quality)

geNomad score 0.9790

Prediction confidence Confident

Genome information
Genome ID	UHGV-0110347
vOTU ID	vOTU-027112
vOTU representative	Yes
Source dataset	GPD
Original genome ID	uvig_257692
BioSample	SAMEA3708842
Country	China
Virus prediction confidence	Confident

Quality assessment
CheckV method	AAI-based
CheckV completeness	59.19% (medium-quality)
CheckV contamination	0.00%
Trimmed provirus	No
CheckV viral markers	13
CheckV host markers	0
Recoded stop codon	No

Viral signal
geNomad score	0.9790
Virus hallmark genes (geNomad)	8
Plasmid hallmark genes (geNomad)	0
viralVerify prediction	Virus
viralVerify score	21.23
Jumbo phage	No

Genome content
Genome length	21,580 bps
GC content	47.88%
Genetic code	The standard bacterial, archaeal and plant plastid code (11)
CDS count	34
CDS density	90.28%
Average CDS length	578.21 bps
tRNA count	3
Suppressor tRNA genes	0

Genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0110347_1	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0110347_1	UniRef90	UniRef90_UPI001D1265F0	phage tail tape measure protein	NA
UHGV-0110347_1	eggNOG-mapper	742740.HMPREF9474_04296	Phage tail tape measure protein TP901	NA
UHGV-0110347_1	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0110347_4	PHROG	phrog_88	major tail protein	tail
UHGV-0110347_4	UniRef90	UniRef90_A0A414AVG1	Phage tail protein	NA
UHGV-0110347_4	eggNOG-mapper	742740.HMPREF9474_04299	NA	NA
UHGV-0110347_4	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0110347_4	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0110347_5	Structural annotation	PF06141	NA	NA
UHGV-0110347_6	Structural annotation	TIGR01725	NA	NA
UHGV-0110347_7	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0110347_7	UniRef90	UniRef90_A0A6N9P9M6	Phage head-tail adapter protein	NA
UHGV-0110347_7	eggNOG-mapper	642492.Clole_1861	head-tail adaptor	NA
UHGV-0110347_7	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0110347_7	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0110347_8	PHROG	phrog_5223	neck protein	connector
UHGV-0110347_8	UniRef90	UniRef90_A0A3D2X9T8	DNA-packaging protein	NA
UHGV-0110347_8	eggNOG-mapper	561177.ANHYDRO_01411	NA	NA
UHGV-0110347_8	Structural annotation	TIGR01560	NA	NA
UHGV-0110347_9	PHROG	phrog_10	major head protein	head and packaging
UHGV-0110347_9	UniRef90	UniRef90_UPI001D143532	phage major capsid protein	NA
UHGV-0110347_9	eggNOG-mapper	1280689.AUJC01000011_gene1521	Phage major capsid protein, HK97 family	NA
UHGV-0110347_9	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0110347_9	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0110347_9	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0110347_9	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0110347_10	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0110347_10	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0110347_10	UniRef90	UniRef90_A0A174XQS2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0110347_10	eggNOG-mapper	1280689.AUJC01000011_gene1520	Belongs to the peptidase S14 family	NA
UHGV-0110347_10	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0110347_10	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0110347_10	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0110347_11	PHROG	phrog_12	portal protein	head and packaging
UHGV-0110347_11	UniRef90	UniRef90_A0A414AVF4	Phage portal protein	NA
UHGV-0110347_11	eggNOG-mapper	1235793.C809_01918	Phage portal protein	NA
UHGV-0110347_11	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0110347_11	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0110347_11	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0110347_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0110347_12	UniRef90	UniRef90_A0A2T3EZM3	Terminase large subunit	NA
UHGV-0110347_12	eggNOG-mapper	626523.GCWU000342_01028	Phage terminase-like protein large subunit	NA
UHGV-0110347_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0110347_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0110347_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0110347_12	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0110347_13	PHROG	phrog_1066	NA	unknown function
UHGV-0110347_13	eggNOG-mapper	1341151.ASZU01000004_gene265	NA	NA
UHGV-0110347_13	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0110347_15	PHROG	phrog_16164	NA	unknown function
UHGV-0110347_15	UniRef90	UniRef90_UPI0018835F0C	collagen-like protein	NA
UHGV-0110347_15	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0110347_15	Structural annotation	PF17813, NF032891	NA	NA
UHGV-0110347_16	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0110347_16	UniRef90	UniRef90_UPI001BBBDD49	RNA polymerase subunit sigma-70	NA
UHGV-0110347_16	eggNOG-mapper	742740.HMPREF9474_03497	NA	NA
UHGV-0110347_16	Structural annotation	PF02996	NA	NA
UHGV-0110347_17	UniRef90	UniRef90_R6ZHB9	Putative bacteriocin ABC transporter	NA
UHGV-0110347_17	eggNOG-mapper	411902.CLOBOL_06327	NA	NA
UHGV-0110347_17	Structural annotation	PF19962, COG1579	NA	NA
UHGV-0110347_18	PHROG	phrog_6568	NA	unknown function
UHGV-0110347_19	PHROG	phrog_15198	NA	unknown function
UHGV-0110347_19	UniRef90	UniRef90_A0A3R6TY20	NA	NA
UHGV-0110347_19	eggNOG-mapper	411462.DORLON_00804	NA	NA
UHGV-0110347_19	Pfam	PF04448	NA	DUF551
UHGV-0110347_19	Structural annotation	PF04448, NF041588	NA	NA
UHGV-0110347_22	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0110347_22	UniRef90	UniRef90_UPI001A2D2F7F	Lar family restriction alleviation protein	NA
UHGV-0110347_22	eggNOG-mapper	269482.Bcep1808_1151	NA	NA
UHGV-0110347_22	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0110347_22	NCBIFam	TIGR03655.1	Lar family restriction alleviation protein	NA
UHGV-0110347_22	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0110347_22	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0110347_23	PHROG	phrog_15077	NA	unknown function
UHGV-0110347_23	eggNOG-mapper	742765.HMPREF9457_02110	NA	NA
UHGV-0110347_23	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0110347_25	Structural annotation	PF04703, MF_01909, NF033788, COG0640	NA	NA
UHGV-0110347_27	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0110347_27	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0110347_27	UniRef90	UniRef90_A0A1C6HJL9	Primosomal protein DnaI	NA
UHGV-0110347_27	eggNOG-mapper	742740.HMPREF9474_03493	IstB-like ATP binding protein	NA
UHGV-0110347_27	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0110347_27	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0110347_27	Structural annotation	PF01695, MF_00377, NF005992, COG1484	NA	NA
UHGV-0110347_28	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0110347_28	UniRef90	UniRef90_D6DIS5	NA	NA
UHGV-0110347_28	eggNOG-mapper	1120998.AUFC01000030_gene2219	NA	NA
UHGV-0110347_28	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0110347_28	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0110347_28	Structural annotation	PF14297, PF07261, TIGR01446, COG3935	NA	NA
UHGV-0110347_29	PHROG	phrog_1029	NA	unknown function
UHGV-0110347_29	UniRef90	UniRef90_E7GRE5	NA	NA
UHGV-0110347_29	eggNOG-mapper	742740.HMPREF9474_03490	NA	NA
UHGV-0110347_29	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0110347_30	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0110347_30	UniRef90	UniRef90_A0A417AC21	Replication terminator protein	NA
UHGV-0110347_32	PHROG	phrog_7566	NA	unknown function
UHGV-0110347_32	UniRef90	UniRef90_UPI0015935946	phosphoenolpyruvate carboxykinase	NA
UHGV-0110347_32	eggNOG-mapper	1304866.K413DRAFT_1198	NA	NA
UHGV-0110347_33	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0110347_33	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0110347_33	Structural annotation	PF05772	NA	NA
UHGV-0110347_34	UniRef90	UniRef90_UPI001BC23C38	Nitrogenase molybdenum-iron protein subunit beta	NA